mRNA_S-firma_F_contig10015.75.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A087HKM7_ARAAL (HELICc2 domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087HKM7_ARAAL) HSP 1 Score: 274 bits (701), Expect = 4.150e-90 Identity = 132/211 (62.56%), Postives = 163/211 (77.25%), Query Frame = 1 Query: 1 LLIKMCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKPDPGLGT 633 LL++M VPDG+V FF SYSYM I+ WS++GIL +I ++KL+FIET+D+VETTLAL N++ AC RGRGA+F SVARGKVAEGIDF H+GR+V+++G+PFQYTL+ L ARL YLRD F I+E DFLTFDALRQAAQC+GRVIRSK+DYGMM+ AD RY + DK SKLP WI HL L+ S A +AR+F R MA+P GT Sbjct: 31 LLVEMVSIVPDGVVCFFVSYSYMDGIIATWSETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDRGRGAVFFSVARGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREFLRKMAQPYDKAGT 241
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A7S0FJQ4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJQ4_9STRA) HSP 1 Score: 271 bits (694), Expect = 9.240e-89 Identity = 127/205 (61.95%), Postives = 162/205 (79.02%), Query Frame = 1 Query: 1 LLIKMCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKP 615 +L++MC ++PDG+VAFF SYSYM I+++W GIL Q+ + KL+FIETKD+VETTLAL N++ AC GRGA+FLSVARGKV+EGI+F H+GR VI+FG+PFQYTL+H LRARL YL+ + I+E DFL FDALRQA+QC+GRVIRSK+DYG+M+LADSRY + DK SKLP+WI Q L L+ S A Q R F R M++P Sbjct: 41 MLVEMCSSIPDGVVAFFTSYSYMENIISEWDGMGILRQLTKHKLVFIETKDVVETTLALDNYRRACDSGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLSHVLRARLEYLQTHYQIREQDFLNFDALRQASQCVGRVIRSKTDYGLMVLADSRYNRHDKRSKLPKWILQFLSDQYLNLSTDMALQHVRHFLRQMSQP 245
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A087GZK3_ARAAL (HELICc2 domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087GZK3_ARAAL) HSP 1 Score: 273 bits (697), Expect = 3.490e-88 Identity = 134/211 (63.51%), Postives = 165/211 (78.20%), Query Frame = 1 Query: 1 LLIKMCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKPDPGLGT 633 LL++M VPDG+V FF SYSYM I+ WS++GIL +I ++KL+FIET+D+VETTLAL N++ AC RGRGA+F SVARGKVAEGIDF H+GR+V+++G+PFQYTL+ L ARL YLRD F I+E DFLTFDALRQAAQC+GRVIRSK+DYGMM+ AD RY + DK SKLP WI HL D LST + A +AR+F R MA+P GT Sbjct: 129 LLVEMVSIVPDGVVCFFVSYSYMDGIIATWSETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDRGRGAVFFSVARGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLR-DNLSTDM--AIHIAREFLRKMAQPYDKAGT 336
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A2U1MI62_ARTAN (RAD3-like DNA-binding helicase protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MI62_ARTAN) HSP 1 Score: 268 bits (686), Expect = 7.130e-88 Identity = 131/205 (63.90%), Postives = 159/205 (77.56%), Query Frame = 1 Query: 1 LLIKMCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKP 615 LL++M VPDGIV FF SYSY IV W+++GIL +I +RKL+FIET+D+VETTLAL N++ AC GRGA+F SVARGKVAEGIDF H+GR+VI+FG+PFQYTL+ L ARL YLR+ F I+E DFLTFDALRQAAQC+GRVIRSK+DYGMM+ AD RY + DK SKLP WI HL L+ S A +AR+F R MA+P Sbjct: 31 LLLEMVSVVPDGIVCFFVSYSYTDAIVNSWNETGILKEIMQRKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYTRHDKRSKLPGWILSHLREAHLNLSTDMAVHIAREFLRKMAQP 235
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A7C9E1G5_OPUST (HELICc2 domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9E1G5_OPUST) HSP 1 Score: 270 bits (690), Expect = 6.130e-87 Identity = 132/205 (64.39%), Postives = 158/205 (77.07%), Query Frame = 1 Query: 1 LLIKMCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKP 615 LL++M VPDGIV FF SYSYM IV W+++GIL I + KL+FIET+D+VETTLAL N++ AC GRGA+F SVARGKVAEGIDF H+GR+VI+FG+PFQYTL+ L ARL YLRD F I+E DFLTFDALRQAAQC+GRVIRSK+DYGMM+ AD RY + DK SKLP WI HL L+ S A +AR+F R MA+P Sbjct: 141 LLLEMVSVVPDGIVCFFVSYSYMDAIVNTWNETGILKDIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDNFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREFLRKMAQP 345
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A7S1YWT9_TRICV (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S1YWT9_TRICV) HSP 1 Score: 265 bits (678), Expect = 6.450e-87 Identity = 123/201 (61.19%), Postives = 158/201 (78.61%), Query Frame = 1 Query: 13 MCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKP 615 +C ++PDG+VAFF SYSYM I+++W G+L Q+ + KL+FIETKD+VETTLAL N++ AC GRGA+FLSVARGKV+EGI+F H+GR VI+FG+PFQYTL+H LRARL YL+ + I+E DFL FDALRQA+QC+GRVIRSK+DYG+M+ ADSRY + DK SKLP+WI Q +H L+ S A Q + F R MA+P Sbjct: 1 LCGSIPDGVVAFFTSYSYMESIISEWDGMGVLRQLTKHKLVFIETKDVVETTLALDNYRRACDSGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLSHVLRARLEYLQTHYQIREQDFLNFDALRQASQCVGRVIRSKTDYGLMIFADSRYNRHDKRSKLPKWILQFMHDGYLNLSTDMALQHVKHFLRVMAQP 201
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A6N2KLZ5_SALVM (DNA helicase n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2KLZ5_SALVM) HSP 1 Score: 271 bits (692), Expect = 1.150e-85 Identity = 133/211 (63.03%), Postives = 161/211 (76.30%), Query Frame = 1 Query: 1 LLIKMCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKPDPGLGT 633 LL++M VPDGIV FF SYSYM I+ W++SG+L +I + KL+FIET+D+VETTLAL N++ AC GRGA+F SVARGKVAEGIDF H+GR+VI+FGIPFQYTL+ L ARL YLRD F I+E DFLTFDALRQAAQC+GRVIRSK+DYGMM+ AD RY + DK SKLP WI HL L+ S A +AR+F R MA+P G+ Sbjct: 268 LLVEMVSIVPDGIVCFFVSYSYMDGIINTWNESGLLKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGIPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREFLRKMAQPYDKTGS 478
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A8J5SF54_ZIZPA (DNA helicase n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SF54_ZIZPA) HSP 1 Score: 272 bits (695), Expect = 1.610e-85 Identity = 134/211 (63.51%), Postives = 160/211 (75.83%), Query Frame = 1 Query: 1 LLIKMCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKPDPGLGT 633 LL++M VPDGIV FF SYSYM IV W++ GIL I + KL+FIET D+VETTLAL N++ AC GRGAIF SVARGKVAEGIDF H+GR+VI+FG+PFQYTL+ L ARL YLR+ F I+E DFLTFDALRQAAQC+GRVIRSK+DYGMM+ AD RY + DK SKLP WI HLH L+ S A +AR+F R MA+P +G+ Sbjct: 324 LLLEMSSAVPDGIVCFFVSYSYMDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAIFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIAREFLRRMAQPYDKMGS 534
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A7S2M061_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M061_9STRA) HSP 1 Score: 261 bits (667), Expect = 2.170e-85 Identity = 123/205 (60.00%), Postives = 157/205 (76.59%), Query Frame = 1 Query: 1 LLIKMCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKP 615 +L+++C ++PDG+VAFF SYSYM I+++W GIL Q+ + KL+FIETKD+VETTLAL NF+ AC GRGA+FLSVARGKV+EGI+F H+GR VI+FG+PFQYTL+H LRARL YL+ + I+E DFL FDALRQA+QC+GRVIRSK DYG+M+ ADSRY + DK +KLP WI L L+ S A + F R MA+P Sbjct: 3 MLVELCSSIPDGVVAFFTSYSYMESIISEWDGMGILRQLTKSKLVFIETKDVVETTLALDNFRRACDSGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLSHILRARLEYLQTNYQIREQDFLNFDALRQASQCVGRVIRSKIDYGLMIFADSRYNRHDKRTKLPGWIQNFLGDGQLNLSTDTAIAQVKHFLRVMAQP 207
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A0A9RIW3_ARUDO (DNA helicase n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9RIW3_ARUDO) HSP 1 Score: 271 bits (692), Expect = 2.390e-85 Identity = 133/211 (63.03%), Postives = 159/211 (75.36%), Query Frame = 1 Query: 1 LLIKMCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKPDPGLGT 633 LL++M VPDGIV FF SYSYM IV W++ GIL I + KL+FIET D+VETTLAL N++ AC GRGA+F SVARGKVAEGIDF H+GR+VI+FG+PFQYTL+ L ARL YLR+ F I+E DFLTFDALRQAAQC+GRVIRSK+DYGMM+ AD RY + DK SKLP WI HLH L+ S A +AR+F R MA+P G+ Sbjct: 299 LLLEMASAVPDGIVCFFVSYSYMDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIAREFLRRMAQPYDKTGS 509 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10015.75.1 >prot_S-firma_F_contig10015.75.1 ID=prot_S-firma_F_contig10015.75.1|Name=mRNA_S-firma_F_contig10015.75.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=207bp MCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVEback to top mRNA from alignment at S-firma_F_contig10015:112..744+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10015.75.1 ID=mRNA_S-firma_F_contig10015.75.1|Name=mRNA_S-firma_F_contig10015.75.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=633bp|location=Sequence derived from alignment at S-firma_F_contig10015:112..744+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10015:112..744+ >mRNA_S-firma_F_contig10015.75.1 ID=mRNA_S-firma_F_contig10015.75.1|Name=mRNA_S-firma_F_contig10015.75.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1242bp|location=Sequence derived from alignment at S-firma_F_contig10015:112..744+ (Sphaerotrichia firma ET2_F female)back to top |