mRNA_S-firma_F_contig1108.1432.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1108.1432.1 vs. uniprot
Match: D7FW22_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW22_ECTSI) HSP 1 Score: 583 bits (1504), Expect = 2.850e-203 Identity = 321/482 (66.60%), Postives = 360/482 (74.69%), Query Frame = 1
Query: 232 MNETGNGEVTLWEFREYFDLPDDRSTTRLFRCFDEDRDNRIGFFEFVTGLWTYCCNCNASVVCLCFDTYDSDHNGQIAADEFDFMIEDVFGPEWEKNDKAKAAHTWFHERDDAQLGFPELGIDAWSAFVSANLQVQASTVHTRLILQKKIIGVGFWTYCLRKRITIFLGRTVNVEKVLSAHVADAVAEELAQDRKLELDHDDSTQFNLRVLRRTGPFPRRRKFRDMAGKKLAITAAAAVGAVATDKVKKFTTMTVREAFERVTVPAGQDATWEEIKAPSVLQALMSSLAVMVERPPPG-ARARSTTSTPPSLSGDNTGLSTSPATSTTKKKRPPSDALSLLKHRPGIDGAALGSPAAAAS-------EADPAIANVFYGLKPLPEAVPARRKTTGRGGSRPISARRVTARTSRTG-SPTGSALARARPSTAGAGGRAVGGGKSTLSRTGKELIYSGEIGGVGLREGQGDGEGGAGALKARML 1650
MNETGNG VTLWEFREYF+LPDDRSTTRLFRCFDEDRDNRIGF E V G+WTYCCNCNASVVCLCFD D DHNG+I ADEF+FMI DVFGPEWEKND+AKA HTWFHERDDA LGFPE+ +DAWSAFVSAN Q+QA VHTRL+LQKK++GVGFWT+CL K +TIFLGRT VE++LSAHV+ + EELAQDR+LELDHDDSTQFNLRV+RRTGPFPRRRK+RDMAGKKL AAAAVGAVA D VKKF T+TVREAFERVTVPAG+DATWE+ K PS LQALM+SL +VER PPG A KK P DAL+LLK+RPGIDGA LGSPA A S +ADPAIAN FYGLKPLPEAV + G R + + ART++ G SP S+ G RAVGGGK TLSRTGKEL+ +GE+G VG+ GEGG G L AR+L
Sbjct: 1 MNETGNGTVTLWEFREYFNLPDDRSTTRLFRCFDEDRDNRIGFLELVVGMWTYCCNCNASVVCLCFDLLDMDHNGKIGADEFNFMIVDVFGPEWEKNDEAKAVHTWFHERDDALLGFPEMDMDAWSAFVSANPQIQAPAVHTRLVLQKKVLGVGFWTHCLPKNMTIFLGRTATVEQILSAHVSPNILEELAQDRRLELDHDDSTQFNLRVIRRTGPFPRRRKYRDMAGKKLRAKAAAAVGAVAADNVKKFATLTVREAFERVTVPAGKDATWEDPKPPSTLQALMASLTAIVERAPPGGAXXXXXXXXXXXXXXXXXXXXXXSKKRKNNKKGAPPDALALLKNRPGIDGAPLGSPAVAPSSPTGSAVDADPAIANAFYGLKPLPEAVAPVSPSAAAGSGRDRA--KTAARTAKKGVSPAASSPE---------GSRAVGGGKITLSRTGKELVGAGEVGCVGVP----GGEGGTGTLSARLL 467
BLAST of mRNA_S-firma_F_contig1108.1432.1 vs. uniprot
Match: A0A6H5JA76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA76_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 9.290e-8 Identity = 38/76 (50.00%), Postives = 46/76 (60.53%), Query Frame = -2
Query: 1077 AAGDPRAAPSMPGRCLSKDSASDGG--LFFFVVLVAGDVESPVLSPLSDGGVLVVLLARAPGGGRSTMTARLDIRA 1298
AAGDPR APSMPGR LS+ SAS G LFFF + GD+++ + DG L+ PGG RSTM RL + A
Sbjct: 17 AAGDPRGAPSMPGRFLSRASASGGAPFLFFFFLEEDGDLDAGLRK--RDGDALLPAAGTPPGGARSTMAVRLAMSA 90 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1108.1432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1108.1432.1 >prot_S-firma_F_contig1108.1432.1 ID=prot_S-firma_F_contig1108.1432.1|Name=mRNA_S-firma_F_contig1108.1432.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=555bp MGGGVSNLISENQRAAMHIAILEVLPARVYALEEMRFRAGSFYDTPDFAEback to top mRNA from alignment at S-firma_F_contig1108:11926..15893+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1108.1432.1 ID=mRNA_S-firma_F_contig1108.1432.1|Name=mRNA_S-firma_F_contig1108.1432.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3968bp|location=Sequence derived from alignment at S-firma_F_contig1108:11926..15893+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1108:11926..15893+ >mRNA_S-firma_F_contig1108.1432.1 ID=mRNA_S-firma_F_contig1108.1432.1|Name=mRNA_S-firma_F_contig1108.1432.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3330bp|location=Sequence derived from alignment at S-firma_F_contig1108:11926..15893+ (Sphaerotrichia firma ET2_F female)back to top |