mRNA_S-firma_F_contig10881.1174.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10881.1174.1
Unique NamemRNA_S-firma_F_contig10881.1174.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10881.1174.1 vs. uniprot
Match: A0A6H5KPH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH5_9PHAE)

HSP 1 Score: 566 bits (1460), Expect = 2.340e-193
Identity = 272/287 (94.77%), Postives = 282/287 (98.26%), Query Frame = 1
Query:    1 PKVTVILNLFMREVLTEQLDSLFAQTTASHISEVWVCVFSAPAQDYALRVVKESKYKNVRLVVSDFNFKFYGRFQMALTAPTDFVWLVDDDMIPGNKYLAQVMHAAGTELLGSSLLGSIGRVLPRPGRDMSLVSYRKWGSHGGMYMPDYYWDQDNAVPVDYLCSQWFLRPEWLQYMWSERPMTFETGEDFHISHTMRKYANIGTYVMPYKSNDDETKGSKFRGLSFVNAATSSSDVPLRDQLWMAALKAGSRMRWMDMFTAEEAHVDPTALLVIRTEADVRALLPLV 861
            PKVTVILNLFMREVLTEQLDSLFAQTTASHI+EVWVCVFSAPAQDYALRVVKESKYKNVRLVVSDFNFKFYGRFQMALTAPTDFVWLVDDDMIPGNKYL Q+MHAAGTELLGSSLLGSIGRVLPRPGRDMSLVSYRKWGSHGGMYMPDYYWDQDNAVPVDYLCSQWFLRPEWLQ+MWSERPMTFETGEDFH+SHT+RKYANIGTYVMP+ S+D+ETKGSKFRGLSFVNAATSSSDVPLRD LWM ALKAGSRMRWMDMFTAEEAHVDP ALL+IRTEADVRAL+PLV
Sbjct:  242 PKVTVILNLFMREVLTEQLDSLFAQTTASHIAEVWVCVFSAPAQDYALRVVKESKYKNVRLVVSDFNFKFYGRFQMALTAPTDFVWLVDDDMIPGNKYLGQLMHAAGTELLGSSLLGSIGRVLPRPGRDMSLVSYRKWGSHGGMYMPDYYWDQDNAVPVDYLCSQWFLRPEWLQHMWSERPMTFETGEDFHVSHTLRKYANIGTYVMPFNSDDEETKGSKFRGLSFVNAATSSSDVPLRDMLWMGALKAGSRMRWMDMFTAEEAHVDPAALLIIRTEADVRALVPLV 528          
BLAST of mRNA_S-firma_F_contig10881.1174.1 vs. uniprot
Match: D8LPR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR2_ECTSI)

HSP 1 Score: 469 bits (1206), Expect = 1.120e-162
Identity = 222/233 (95.28%), Postives = 231/233 (99.14%), Query Frame = 1
Query:    1 PKVTVILNLFMREVLTEQLDSLFAQTTASHISEVWVCVFSAPAQDYALRVVKESKYKNVRLVVSDFNFKFYGRFQMALTAPTDFVWLVDDDMIPGNKYLAQVMHAAGTELLGSSLLGSIGRVLPRPGRDMSLVSYRKWGSHGGMYMPDYYWDQDNAVPVDYLCSQWFLRPEWLQYMWSERPMTFETGEDFHISHTMRKYANIGTYVMPYKSNDDETKGSKFRGLSFVNAATSS 699
            PKVTVILNLFMREVLTEQLDSLFAQTTASHI+EVWVCVFSAPAQDYALRVVKESKYKNVRLVVSDFNFKFYGRFQMALTAPTDFVWL+DDDMIPGNKYL Q+MHAAGTELLGSSLLGSIGRVLPRPGRDMSLVSYRKWGSHGGMYMPDYYWDQD+AVPVDYLCSQWFLRPEWLQ+MWSERPMTFETGEDFH+SHTMRKYANIGTYVMP+ S+D+ETKGSKFRGLSFVNAATSS
Sbjct:  228 PKVTVILNLFMREVLTEQLDSLFAQTTASHIAEVWVCVFSAPAQDYALRVVKESKYKNVRLVVSDFNFKFYGRFQMALTAPTDFVWLIDDDMIPGNKYLGQLMHAAGTELLGSSLLGSIGRVLPRPGRDMSLVSYRKWGSHGGMYMPDYYWDQDSAVPVDYLCSQWFLRPEWLQHMWSERPMTFETGEDFHVSHTMRKYANIGTYVMPFNSDDEETKGSKFRGLSFVNAATSS 460          
BLAST of mRNA_S-firma_F_contig10881.1174.1 vs. uniprot
Match: A0A1J3I729_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3I729_NOCCA)

HSP 1 Score: 211 bits (536), Expect = 1.090e-62
Identity = 113/264 (42.80%), Postives = 158/264 (59.85%), Query Frame = 1
Query:    1 PKVTVILNLFMREVLTEQLDSLFAQTTASHISEVWVCVFSAPAQDYALRVVKESKYKNVRLVVSDFNFKFYGRFQMALTAPTDFVWLVDDDMIPGNKYLAQVMHAAGTELLGSSLLGSIGRVLPRPGRDMSLVSYRKWGS-HGGMYMPDYYWD--QDNAVPVDYLCSQWFLRPEWLQYMWSERPMTFETGEDFHISHTMRKYANIGTYVMPYKSNDDETKGSKFRGLSFVNAATS--SSDVPLRDQLWMAALKAGSRMRWMDMF 777
            PKVTVILN F R+ L  QLDSL  QT   H   VWV  F +P +    R+        +  + S+++FK+YGRFQ+AL    D V+++DDDMIPG K L  + H AGTE   +S+LGSIGR+LP   +D +  SYRK+ S   G+Y+PD  +D   D  + VD+L S WFL  E ++ ++ E+P TF TGED H+S+ ++KY N G++V+P   ND ET G     L++V+  T    + V +RD  W  AL  G   +W  M+
Sbjct:   87 PKVTVILNHFKRKTLCAQLDSLLHQTLPFH--HVWVLAFGSPNEASLRRIAGSYNDSRISFISSNYDFKYYGRFQIALQTEADLVYVIDDDMIPGKKMLQMLSHVAGTEKYENSVLGSIGRILPFRQKDFTFPSYRKFRSKEAGLYLPDPAYDITLDRILQVDFLSSSWFLSAELVKALFIEKPFTFATGEDLHLSYQLQKYRNAGSFVLPVDPNDKETWGDSEHRLAYVSETTVIFKNIVEVRDNQWWKALSTGYITQWAAMY 348          
BLAST of mRNA_S-firma_F_contig10881.1174.1 vs. uniprot
Match: A0A7N0TYA9_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TYA9_KALFE)

HSP 1 Score: 222 bits (565), Expect = 1.300e-62
Identity = 127/291 (43.64%), Postives = 172/291 (59.11%), Query Frame = 1
Query:    1 PKVTVILNLFMREVLTEQLDSLFAQTTASHISEVWVCVFSAPAQDYALRVVKESKYKNVRLVVSDFNFKFYGRFQMALTAPTDFVWLVDDDMIPGNKYLAQVMHAAGTELLGSSLLGSIGRVLPRPGRDMSLVSYRKWGS-HGGMYMPDYYWD--QDNAVPVDYLCSQWFLRPEWLQYMWSERPMTFETGEDFHISHTMRKYANIGTYVMPYKSNDDETKGSKFRGLSFVNAATS--SSDVPLRDQLWMAALKAGSRMRWMDMFTAEEAHVDPTALLVIRTEADVRALLPL 858
            PKVTVILN F R+ L  QLDSL  QT   H   VWV  F +P  +   R+V       +  + S ++FK+YGRFQMAL   +D V++VDDDMIPG K L  + H AGTE   +S+LGSIGR+LP   +D +  SYRK+ S   G+Y+PD  +D   D  V VD+L S WFL  E ++ ++ E PMTF TGED H+S+T++KY N G+YV+P  ++D ET G     L++V+  T      V +RD  W  AL  G   +W  M       +D  A+    + ++VRAL PL
Sbjct:  185 PKVTVILNHFKRKTLCAQLDSLLRQTLGFH--HVWVLAFGSPNANTLSRIVSSYNDSRISFISSQYDFKYYGRFQMALQTESDLVYIVDDDMIPGTKMLQILSHVAGTEKYRNSVLGSIGRILPFRQKDFTFPSYRKFRSKEAGLYLPDPAYDIIVDKIVQVDFLSSSWFLSAELIRTLFVEAPMTFMTGEDLHLSYTLQKYRNAGSYVLPVDASDKETWGDSEHRLAYVSETTVIFKGTVQVRDDQWWKALSTGYVTQWAAM---NPQKID--AMFYAHSVSEVRALAPL 468          
BLAST of mRNA_S-firma_F_contig10881.1174.1 vs. uniprot
Match: A0A067LHF7_JATCU (Uncharacterized protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067LHF7_JATCU)

HSP 1 Score: 217 bits (553), Expect = 5.720e-61
Identity = 126/291 (43.30%), Postives = 171/291 (58.76%), Query Frame = 1
Query:    1 PKVTVILNLFMREVLTEQLDSLFAQTTASHISEVWVCVFSAPAQDYALRVVKESKYKNVRLVVSDFNFKFYGRFQMALTAPTDFVWLVDDDMIPGNKYLAQVMHAAGTELLGSSLLGSIGRVLPRPGRDMSLVSYRKWGS-HGGMYMPDYYWDQ--DNAVPVDYLCSQWFLRPEWLQYMWSERPMTFETGEDFHISHTMRKYANIGTYVMPYKSNDDETKGSKFRGLSFVNAATS--SSDVPLRDQLWMAALKAGSRMRWMDMFTAEEAHVDPTALLVIRTEADVRALLPL 858
            PKVTVILN F R+ L  QLDSL  QT   H   VWV  F +P +    R+V+      +  + S ++FK+YGRFQMAL    D V++VDDDMIPG K L  + H AGTE   +S+LGSIGR+LP   +D +  SYRK+ S   G+Y+PD  +D   D  V VD+L S WFL  E ++ ++ E PMTF TGED H+S+ ++KY N G++V+P   ND ET G     L++V+  T      V +RD  W  AL  G   +W  M+  +   +D  AL    +  +V+AL PL
Sbjct:  175 PKVTVILNHFKRKTLCAQLDSLLQQTLPFH--HVWVLAFGSPNEVSLKRIVQSYNDSRISFISSSYDFKYYGRFQMALQTEADLVYIVDDDMIPGKKMLQILSHVAGTEKYKNSVLGSIGRILPFRQKDFTFPSYRKFRSKEAGLYLPDPAYDITIDKIVQVDFLSSSWFLSAELVKTLFVEAPMTFMTGEDLHLSYQLQKYRNAGSFVLPVDPNDKETWGDSEHRLAYVSETTVIFKDIVQVRDDQWWKALSTGYVTQWAAMYPQK---ID--ALFYAHSVDEVKALAPL 458          
BLAST of mRNA_S-firma_F_contig10881.1174.1 vs. uniprot
Match: UPI000900D020 (uncharacterized protein LOC109173525 n=4 Tax=Ipomoea TaxID=4119 RepID=UPI000900D020)

HSP 1 Score: 217 bits (552), Expect = 8.360e-61
Identity = 126/291 (43.30%), Postives = 169/291 (58.08%), Query Frame = 1
Query:    1 PKVTVILNLFMREVLTEQLDSLFAQTTASHISEVWVCVFSAPAQDYALRVVKESKYKNVRLVVSDFNFKFYGRFQMALTAPTDFVWLVDDDMIPGNKYLAQVMHAAGTELLGSSLLGSIGRVLPRPGRDMSLVSYRKWGS-HGGMYMPDYYWD--QDNAVPVDYLCSQWFLRPEWLQYMWSERPMTFETGEDFHISHTMRKYANIGTYVMPYKSNDDETKGSKFRGLSFVNAATS--SSDVPLRDQLWMAALKAGSRMRWMDMFTAEEAHVDPTALLVIRTEADVRALLPL 858
            PK+TVILN F R+ L  QLDSL  QT   H   VWV  F +P +    R+V+      +  + S ++FK+YGRFQMAL    D V++VDDDMIPG K L  + H AGTE   +S+LGSIGR+LP   +D S  SYRK+ S   G+Y+PD  +D   D  V VD+L S WFL  E ++ +++E P TF TGED H+S+ ++KY N G++V+P   ND ET G     L++V+  T      V +RD  W  AL  G   +W  M       +D  AL    +  DV+AL PL
Sbjct:  184 PKITVILNHFKRKTLCAQLDSLLNQTLPFH--HVWVLSFGSPNEQTLRRIVESYNDTRISFISSGYDFKYYGRFQMALQTEADLVYIVDDDMIPGKKMLQILAHVAGTEKYQNSVLGSIGRILPFRQKDFSFPSYRKFRSKEAGLYLPDPAYDILVDRIVQVDFLSSSWFLSAELIKTLFTETPFTFMTGEDLHLSYQLQKYRNAGSFVLPVDPNDKETWGDSEHRLAYVSETTVIFKDIVQVRDDQWWKALSTGYVTQWAAM---NPQKID--ALFYAHSMDDVKALAPL 467          
BLAST of mRNA_S-firma_F_contig10881.1174.1 vs. uniprot
Match: A0A6N2LP55_SALVM (Uncharacterized protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2LP55_SALVM)

HSP 1 Score: 214 bits (546), Expect = 1.140e-60
Identity = 127/290 (43.79%), Postives = 170/290 (58.62%), Query Frame = 1
Query:    4 KVTVILNLFMREVLTEQLDSLFAQTTASHISEVWVCVFSAPAQDYALRVVKESKYKNVRLVVSDFNFKFYGRFQMALTAPTDFVWLVDDDMIPGNKYLAQVMHAAGTELLGSSLLGSIGRVLPRPGRDMSLVSYRKWGS-HGGMYMPDYYWD--QDNAVPVDYLCSQWFLRPEWLQYMWSERPMTFETGEDFHISHTMRKYANIGTYVMPYKSNDDETKGSKFRGLSFVNAATS--SSDVPLRDQLWMAALKAGSRMRWMDMFTAEEAHVDPTALLVIRTEADVRALLPL 858
            KVTVILN F R+ L EQ+DSL  QT   H   VWV  F +P +    R+V       +  V S ++FK+YGRFQMAL    D V++VDDDMIPG K L  + H AGTE   +S+LGSIGR+LP   +D +  SYRK+ S   G+Y+PD  +D   D  V VD+L S WFL  E ++ ++ E PMTF TGED H+S+ ++KY N G++V+P   ND ET G     L++V+  T      V +RD  W  AL AG   +W  M   +   +D  A+    +  +VRAL PL
Sbjct:   16 KVTVILNHFKRKTLCEQIDSLLHQTLPFH--HVWVLSFGSPNELSLKRIVDSYNDSRISFVSSSYDFKYYGRFQMALQTEADLVYVVDDDMIPGRKMLQILSHVAGTEKYKNSVLGSIGRILPFRQKDFTFPSYRKFRSKEAGLYLPDPAYDITVDKIVQVDFLSSSWFLSAELVKTLFIEAPMTFMTGEDLHLSYQLQKYRNAGSFVLPVDPNDKETWGDSEHRLAYVSETTVIFKDIVQIRDDQWWKALSAGYVTQWAVMHPQK---ID--AIFYAHSVDEVRALAPL 298          
BLAST of mRNA_S-firma_F_contig10881.1174.1 vs. uniprot
Match: A0A0K9RUQ5_SPIOL (Uncharacterized protein n=3 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0K9RUQ5_SPIOL)

HSP 1 Score: 215 bits (548), Expect = 2.770e-60
Identity = 125/291 (42.96%), Postives = 172/291 (59.11%), Query Frame = 1
Query:    1 PKVTVILNLFMREVLTEQLDSLFAQTTASHISEVWVCVFSAPAQDYALRVVKESKYKNVRLVVSDFNFKFYGRFQMALTAPTDFVWLVDDDMIPGNKYLAQVMHAAGTELLGSSLLGSIGRVLPRPGRDMSLVSYRKWGS-HGGMYMPDYYWD--QDNAVPVDYLCSQWFLRPEWLQYMWSERPMTFETGEDFHISHTMRKYANIGTYVMPYKSNDDETKGSKFRGLSFVNAATS--SSDVPLRDQLWMAALKAGSRMRWMDMFTAEEAHVDPTALLVIRTEADVRALLPL 858
            PKVTVILN F R+ L  QLDSL  QT   H   VWV  F +P +    R+V+      +  V S+++FK+YGRFQMAL    D V++VDDDMIPG K L  + H AGTE   +S+LGSIGR+LP   +D +  SYRK+ S   G+Y+PD  +D   +  V VD+L S WFL  E ++ ++ E PMTF TGED H+S+ ++KY N G++V+P    D ET G     L++V+  T      V +RD  W  AL +G   +W  M+  +   +D  AL    +  +V+AL PL
Sbjct:  172 PKVTVILNHFKRKTLCAQLDSLLQQTLPFH--HVWVLAFGSPNELLLRRIVQSYNDSRISFVSSNYDFKYYGRFQMALQTEADLVYIVDDDMIPGKKMLQILSHVAGTEKYKNSVLGSIGRILPFRQKDFTFPSYRKFRSKEAGLYLPDPAYDILVEKVVQVDFLSSSWFLSAELVKTLFIENPMTFMTGEDLHLSYQLQKYRNAGSFVLPVDPKDKETWGDSEHRLAYVSETTVIFKDIVQVRDDQWWRALSSGYVTQWAAMYPQK---ID--ALFYAHSIEEVKALSPL 455          
BLAST of mRNA_S-firma_F_contig10881.1174.1 vs. uniprot
Match: A0A6I9U624_SESIN (uncharacterized protein LOC105170283 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9U624_SESIN)

HSP 1 Score: 214 bits (546), Expect = 5.410e-60
Identity = 124/291 (42.61%), Postives = 169/291 (58.08%), Query Frame = 1
Query:    1 PKVTVILNLFMREVLTEQLDSLFAQTTASHISEVWVCVFSAPAQDYALRVVKESKYKNVRLVVSDFNFKFYGRFQMALTAPTDFVWLVDDDMIPGNKYLAQVMHAAGTELLGSSLLGSIGRVLPRPGRDMSLVSYRKWGS-HGGMYMPDYYWDQ--DNAVPVDYLCSQWFLRPEWLQYMWSERPMTFETGEDFHISHTMRKYANIGTYVMPYKSNDDETKGSKFRGLSFVNAATS--SSDVPLRDQLWMAALKAGSRMRWMDMFTAEEAHVDPTALLVIRTEADVRALLPL 858
            PKVTVILN F R+ L  QLDSL  QT   H   VWV  F +P +    R+V       +  + S ++FK+YGRFQMAL    D V+++DDDMIPG K L  + H AGTE   +S+LGSIGR+LP   +D +  SYRK+ S   G+Y+PD  +D   D  V VD+L S WFL  E ++ ++ E P TF TGED H+S+ ++KY N G++V+P   ND ET G     L++V+  T      V +RD  W  AL  G   +W  M+  +   +D  AL    +  +V+AL PL
Sbjct:  176 PKVTVILNHFKRKTLCAQLDSLLHQTLPFH--HVWVLSFGSPNEQSLKRIVDSYNNSRISFISSSYDFKYYGRFQMALQTEADLVYILDDDMIPGRKMLQILSHVAGTEKYKNSVLGSIGRILPFRQKDFTFPSYRKFRSKEAGLYLPDPAYDITIDRVVQVDFLSSSWFLSAELIKTLFIETPFTFMTGEDLHLSYQLQKYRNAGSFVLPVDPNDKETWGDSEHRLAYVSETTVIFKDIVQVRDDQWWKALSTGYITQWAAMYPQK---ID--ALFYAHSVEEVKALSPL 459          
BLAST of mRNA_S-firma_F_contig10881.1174.1 vs. uniprot
Match: A0A803M3J0_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803M3J0_CHEQI)

HSP 1 Score: 214 bits (545), Expect = 5.780e-60
Identity = 125/291 (42.96%), Postives = 172/291 (59.11%), Query Frame = 1
Query:    1 PKVTVILNLFMREVLTEQLDSLFAQTTASHISEVWVCVFSAPAQDYALRVVKESKYKNVRLVVSDFNFKFYGRFQMALTAPTDFVWLVDDDMIPGNKYLAQVMHAAGTELLGSSLLGSIGRVLPRPGRDMSLVSYRKWGS-HGGMYMPDYYWD--QDNAVPVDYLCSQWFLRPEWLQYMWSERPMTFETGEDFHISHTMRKYANIGTYVMPYKSNDDETKGSKFRGLSFVNAATS--SSDVPLRDQLWMAALKAGSRMRWMDMFTAEEAHVDPTALLVIRTEADVRALLPL 858
            PKVTVILN F R+ L  QLDSL  QT   H   VWV  F +P +    R+V+      +  V S+++FK+YGRFQMAL    D V++VDDDMIPG K L  + H AGTE   +S+LGSIGR+LP   +D +  SYRK+ S   G+Y+PD  +D   +  V VD+L S WFL  E ++ ++ E PMTF TGED H+S+ ++KY N G++V+P    D ET G     L++V+  T      V +RD  W  AL +G   +W  M+  +   +D  AL    +  +V+AL PL
Sbjct:  177 PKVTVILNHFKRKTLCAQLDSLLHQTLPFH--HVWVLAFGSPNELSLRRIVQSYNDSRISFVGSNYDFKYYGRFQMALQTEADLVYIVDDDMIPGKKMLQILSHVAGTEKYKNSVLGSIGRILPFRQKDFTFPSYRKFRSKEAGLYLPDPAYDILVEKVVQVDFLSSSWFLSAELVKTLFIENPMTFMTGEDLHLSYQLQKYRNAGSFVLPVDPKDKETWGDSEHRLAYVSETTVIFKDVVQVRDDQWWRALSSGYVTQWAAMYPQK---ID--ALFYAHSINEVKALAPL 460          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10881.1174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPH5_9PHAE2.340e-19394.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPR2_ECTSI1.120e-16295.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1J3I729_NOCCA1.090e-6242.80Uncharacterized protein (Fragment) n=1 Tax=Noccaea... [more]
A0A7N0TYA9_KALFE1.300e-6243.64Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
A0A067LHF7_JATCU5.720e-6143.30Uncharacterized protein n=1 Tax=Jatropha curcas Ta... [more]
UPI000900D0208.360e-6143.30uncharacterized protein LOC109173525 n=4 Tax=Ipomo... [more]
A0A6N2LP55_SALVM1.140e-6043.79Uncharacterized protein n=1 Tax=Salix viminalis Ta... [more]
A0A0K9RUQ5_SPIOL2.770e-6042.96Uncharacterized protein n=3 Tax=Chenopodiaceae Tax... [more]
A0A6I9U624_SESIN5.410e-6042.61uncharacterized protein LOC105170283 n=1 Tax=Sesam... [more]
A0A803M3J0_CHEQI5.780e-6042.96Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10881contigS-firma_F_contig10881:2100..4215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LPR2
Max annot lvl2759|Eukaryota
Evalue1.7e-156
EggNOG OGs2CMCB@1|root,2QPYF@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_002160.1
Hectar predicted targeting categoryother localisation
Exons5
Model size861
Cds size831
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10881.1174.1prot_S-firma_F_contig10881.1174.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10881 2130..4215 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.9584358-UTR-S-firma_F_contig10881:2099..21291622815631.9584358-UTR-S-firma_F_contig10881:2099..2129Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10881 2100..2129 +
1696949466.986102-UTR-S-firma_F_contig10881:2099..21291696949466.986102-UTR-S-firma_F_contig10881:2099..2129Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10881 2100..2129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.9715643-CDS-S-firma_F_contig10881:2129..21381622815631.9715643-CDS-S-firma_F_contig10881:2129..2138Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10881 2130..2138 +
1696949466.998388-CDS-S-firma_F_contig10881:2129..21381696949466.998388-CDS-S-firma_F_contig10881:2129..2138Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10881 2130..2138 +
1622815631.9835765-CDS-S-firma_F_contig10881:2367..25531622815631.9835765-CDS-S-firma_F_contig10881:2367..2553Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10881 2368..2553 +
1696949467.0085742-CDS-S-firma_F_contig10881:2367..25531696949467.0085742-CDS-S-firma_F_contig10881:2367..2553Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10881 2368..2553 +
1622815631.9996264-CDS-S-firma_F_contig10881:3001..31871622815631.9996264-CDS-S-firma_F_contig10881:3001..3187Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10881 3002..3187 +
1696949467.0186865-CDS-S-firma_F_contig10881:3001..31871696949467.0186865-CDS-S-firma_F_contig10881:3001..3187Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10881 3002..3187 +
1622815632.0187578-CDS-S-firma_F_contig10881:3365..34851622815632.0187578-CDS-S-firma_F_contig10881:3365..3485Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10881 3366..3485 +
1696949467.0282853-CDS-S-firma_F_contig10881:3365..34851696949467.0282853-CDS-S-firma_F_contig10881:3365..3485Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10881 3366..3485 +
1622815632.0316484-CDS-S-firma_F_contig10881:3885..42151622815632.0316484-CDS-S-firma_F_contig10881:3885..4215Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10881 3886..4215 +
1696949467.0409255-CDS-S-firma_F_contig10881:3885..42151696949467.0409255-CDS-S-firma_F_contig10881:3885..4215Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10881 3886..4215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10881.1174.1

>prot_S-firma_F_contig10881.1174.1 ID=prot_S-firma_F_contig10881.1174.1|Name=mRNA_S-firma_F_contig10881.1174.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=277bp
MREVLTEQLDSLFAQTTASHISEVWVCVFSAPAQDYALRVVKESKYKNVR
LVVSDFNFKFYGRFQMALTAPTDFVWLVDDDMIPGNKYLAQVMHAAGTEL
LGSSLLGSIGRVLPRPGRDMSLVSYRKWGSHGGMYMPDYYWDQDNAVPVD
YLCSQWFLRPEWLQYMWSERPMTFETGEDFHISHTMRKYANIGTYVMPYK
SNDDETKGSKFRGLSFVNAATSSSDVPLRDQLWMAALKAGSRMRWMDMFT
AEEAHVDPTALLVIRTEADVRALLPLV
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mRNA from alignment at S-firma_F_contig10881:2100..4215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10881.1174.1 ID=mRNA_S-firma_F_contig10881.1174.1|Name=mRNA_S-firma_F_contig10881.1174.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2116bp|location=Sequence derived from alignment at S-firma_F_contig10881:2100..4215+ (Sphaerotrichia firma ET2_F female)
CCTAAAGTCACGGTCATCCTCAACCTTTTCATGAGAGAGGTGCGTACATG GACGAGAGAGAGAGAGAGGTCGGGGCGTGAATGGAGATAGGAGGAAGGAA GGAGGGGGTGGGATGAGATGAGATGGGAAGGGAGGTCTCTCTTTTTATCT CTCCCTCTTCCTCATTCCCTTCGTCCTCCGCCCCATTGTTGCGAAAGAGG GCATCGATCAAAATACAACGAAGACGAAACGAACAAGAATGCCACATGCT GTCTGTATTGTTCTGCAGGTTTTGACGGAGCAGCTGGACAGCCTGTTCGC ACAGACGACGGCGAGCCACATCTCGGAGGTCTGGGTGTGCGTGTTCAGCG CACCTGCTCAGGACTATGCGCTGAGAGTGGTGAAGGAATCGAAGTACAAG AACGTGAGGCTTGTCGTCAGCGACTTCAACTTCAAGTTCTACGGGAGATT CCAGGTCAGTCAGTTTTCTTTATTCTGGCTGCTCTGCTCTGGTGGTCTGG TCATCGCTCCGCTCGCCCGTGTTTTTGTGCTGGTACGCCCTGAATGCTTT CCCAGCGGGGTTGTCCTTGACGAGCTAAAGCAGTACCACGTTGTTGTGTG ACTGGTGTGTTCTTGTGAGCAATTTTTTCGTTTGGTGCAATCTGGGGATG GAATCATGGCTTCATGCCACAGACAAGAACCTCTGCACGCAAACAGAAGG TCAGCTTTATCCCGTATCGTGCTGCTTTGGTCGCGCCAACGGGTATGGTG GATCCCATCGCCCGTAGACAAACCTGCATGGCTATATTTGAATGGCGGTT TCCCTTCCTTGCATGAAAGCTACTTCTTGCAAAAAATATAACGCTTTCAT ATCTTAAATCTCTTCCTTGATTCCTTGAATATCCTTGAATATCGTTGAAT AGATGGCGCTGACGGCGCCGACAGACTTCGTGTGGTTAGTGGACGACGAC ATGATCCCGGGCAACAAGTATCTCGCTCAGGTTATGCATGCGGCCGGTAC GGAGCTCCTTGGAAGCTCGCTTCTGGGCAGCATCGGAAGGGTGCTGCCGA GGCCCGGCAGGGACATGTCTCTCGTGTCGTACCGAAAGGTGCGAAGAGGC CATGATATTGTATTATAGGCTATGTTGTGTGTGATGCTGATACTACATAC AGTACATGACGTTTGTGTGTTGGTCTTTGTTTTGTTGTCAGTTGTCGCGT CGCGTTGTTTCGGTGGCGGGTCGGACTAAATGTCGGGATTTCTTATCCAT TGCCGTGATTTCGCAGTGGGGAAGTCACGGAGGGATGTATATGCCCGACT ACTACTGGGACCAAGACAACGCCGTGCCCGTGGACTACCTGTGCAGCCAA TGGTTCTTGCGGCCGGAGTGGCTGCAGTACATGTGGGTGAGTTCTGGTTG GGGCTGTGGAAACCCGTGACGCCGGTGTGTTGATCGGGGAGACACACGAC GTTCCGTGGCAAGAGCCAGGCGATCGTGGTGCACCATGCCAGGACTGAGC ATGTGTGTTTTGCACAGACCCGACAGGCAGGCATTCCACCGAGCAAGTAC GCACCGCATTGAGTTGTTGAGCGAGTTGCGTGAAGGTGAGCTGCATCTCA TCTGATCTCGGCTCTAGAATCAACAGCGTTTGGGGCAGCCGTTCGGATCT GTGCTTCCTTTTGTTGGGGTAGGAACTGCTGCGCTCAATTGAAACGTGCG GTCATTGGTTCAGGGGCTTGGGCAAGCAACGTTTAGTTTATGATCCCCTC CCCCCCCTCCGTGCAACCGAACCTGACGTGCAACAGAGCGAGCGGCCGAT GACGTTTGAGACGGGGGAAGACTTCCACATCTCGCACACCATGCGCAAGT ACGCCAACATCGGGACGTACGTGATGCCGTACAAATCGAACGACGACGAG ACCAAGGGGAGCAAGTTCCGGGGGCTCTCCTTCGTGAATGCGGCCACCAG CAGCAGCGACGTCCCCCTTCGAGACCAGCTGTGGATGGCCGCCCTCAAGG CCGGCAGCCGCATGCGATGGATGGACATGTTCACTGCGGAGGAGGCGCAC GTCGACCCCACCGCGTTGCTCGTCATCCGCACCGAGGCGGATGTCAGGGC CTTGCTGCCGCTGGTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10881:2100..4215+

>mRNA_S-firma_F_contig10881.1174.1 ID=mRNA_S-firma_F_contig10881.1174.1|Name=mRNA_S-firma_F_contig10881.1174.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1662bp|location=Sequence derived from alignment at S-firma_F_contig10881:2100..4215+ (Sphaerotrichia firma ET2_F female)
ATGAGAGAGATGAGAGAGGTTTTGACGGAGCAGCTGGACAGCCTGTTCGC
ACAGACGACGGCGAGCCACATCTCGGAGGTCTGGGTGTGCGTGTTCAGCG
CACCTGCTCAGGACTATGCGCTGAGAGTGGTGAAGGAATCGAAGTACAAG
AACGTGAGGCTTGTCGTCAGCGACTTCAACTTCAAGTTCTACGGGAGATT
CCAGGTTTTGACGGAGCAGCTGGACAGCCTGTTCGCACAGACGACGGCGA
GCCACATCTCGGAGGTCTGGGTGTGCGTGTTCAGCGCACCTGCTCAGGAC
TATGCGCTGAGAGTGGTGAAGGAATCGAAGTACAAGAACGTGAGGCTTGT
CGTCAGCGACTTCAACTTCAAGTTCTACGGGAGATTCCAGATGGCGCTGA
CGGCGCCGACAGACTTCGTGTGGTTAGTGGACGACGACATGATCCCGGGC
AACAAGTATCTCGCTCAGGTTATGCATGCGGCCGGTACGGAGCTCCTTGG
AAGCTCGCTTCTGGGCAGCATCGGAAGGGTGCTGCCGAGGCCCGGCAGGG
ACATGTCTCTCGTGTCGTACCGAAAGATGGCGCTGACGGCGCCGACAGAC
TTCGTGTGGTTAGTGGACGACGACATGATCCCGGGCAACAAGTATCTCGC
TCAGGTTATGCATGCGGCCGGTACGGAGCTCCTTGGAAGCTCGCTTCTGG
GCAGCATCGGAAGGGTGCTGCCGAGGCCCGGCAGGGACATGTCTCTCGTG
TCGTACCGAAAGTGGGGAAGTCACGGAGGGATGTATATGCCCGACTACTA
CTGGGACCAAGACAACGCCGTGCCCGTGGACTACCTGTGCAGCCAATGGT
TCTTGCGGCCGGAGTGGCTGCAGTACATGTGGTGGGGAAGTCACGGAGGG
ATGTATATGCCCGACTACTACTGGGACCAAGACAACGCCGTGCCCGTGGA
CTACCTGTGCAGCCAATGGTTCTTGCGGCCGGAGTGGCTGCAGTACATGT
GGAGCGAGCGGCCGATGACGTTTGAGACGGGGGAAGACTTCCACATCTCG
CACACCATGCGCAAGTACGCCAACATCGGGACGTACGTGATGCCGTACAA
ATCGAACGACGACGAGACCAAGGGGAGCAAGTTCCGGGGGCTCTCCTTCG
TGAATGCGGCCACCAGCAGCAGCGACGTCCCCCTTCGAGACCAGCTGTGG
ATGGCCGCCCTCAAGGCCGGCAGCCGCATGCGATGGATGGACATGTTCAC
TGCGGAGGAGGCGCACGTCGACCCCACCGCGTTGCTCGTCATCCGCACCG
AGGCGGATGTCAGGGCCTTGCTGCCGCTGGTGAGCGAGCGGCCGATGACG
TTTGAGACGGGGGAAGACTTCCACATCTCGCACACCATGCGCAAGTACGC
CAACATCGGGACGTACGTGATGCCGTACAAATCGAACGACGACGAGACCA
AGGGGAGCAAGTTCCGGGGGCTCTCCTTCGTGAATGCGGCCACCAGCAGC
AGCGACGTCCCCCTTCGAGACCAGCTGTGGATGGCCGCCCTCAAGGCCGG
CAGCCGCATGCGATGGATGGACATGTTCACTGCGGAGGAGGCGCACGTCG
ACCCCACCGCGTTGCTCGTCATCCGCACCGAGGCGGATGTCAGGGCCTTG
CTGCCGCTGGTG
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