mRNA_S-firma_F_contig10828.1109.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10828.1109.1
Unique NamemRNA_S-firma_F_contig10828.1109.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10828.1109.1 vs. uniprot
Match: A0A813C532_9DINO (TNNC2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C532_9DINO)

HSP 1 Score: 290 bits (742), Expect = 1.370e-95
Identity = 151/237 (63.71%), Postives = 187/237 (78.90%), Query Frame = 1
Query:   28 EAEEPKDVTSNEEKELRRVYDYLCNFSPKHKIRKDMAPKLERKQKILQFKKNPDAIRIVDEAGVELTPEQLDAELDIINEQLDELEAAIAEIDADPAKKVHAMDLMDALKALGKKSTKKEVEDMIWEVDENLDGCVDWEEFHLMFQRNIKDKTGLEPFQLFNVVQFMMYDRSNSGAVTVDETMHMLYARYGKDRLEAEMKMLFGDDLRADGDGRLTFTQYLKAVNVRLPKNQDKGKK 738
            E E PKDVT+NE KEL RV+++LC+F+PK+K+   + PKLERKQKIL +KKNP+A+++ D+ G EL+ + +DAEL  + E++ ++EA I  I +   KKV   DL +AL  LGK+S+KKE+EDMIWEVDENLDGCVDWEEF LMFQRNIKD TG EPFQLFNVVQFMMYD   SG V+VDETMHMLYARYGK RLE EMK LFGD L  +G+G LTF  YLKAV+VR+P++   G+K
Sbjct:   26 EPEAPKDVTANELKELERVFEFLCDFAPKNKLNNLLKPKLERKQKILSYKKNPEAVKLEDDTGRELSDDLIDAELQRLEEEIGDIEAQINTIKSKQDKKVKPKDLQEALAFLGKRSSKKEIEDMIWEVDENLDGCVDWEEFQLMFQRNIKDTTGKEPFQLFNVVQFMMYDVDFSGEVSVDETMHMLYARYGKARLEREMKALFGDKLH-NGNGTLTFLDYLKAVSVRVPRDPRLGRK 261          
BLAST of mRNA_S-firma_F_contig10828.1109.1 vs. uniprot
Match: A0A5A8DI08_CAFRO (EF-hand domain-containing protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8DI08_CAFRO)

HSP 1 Score: 290 bits (741), Expect = 1.490e-95
Identity = 149/244 (61.07%), Postives = 187/244 (76.64%), Query Frame = 1
Query:    4 AAWVAMSKEAEEPKDVTSNEEKELRRVYDYLCNFSPKHKIRKDMAPKLERKQKILQFKKNPDAIRIVDEAGVELTPEQLDAELDIINEQLDELEAAIAEIDADPAKKVHAMDLMDALKALGKKSTKKEVEDMIWEVDENLDGCVDWEEFHLMFQRNIKDKTGLEPFQLFNVVQFMMYDRSNSGAVTVDETMHMLYARYGKDRLEAEMKMLFGDDLRADGDGRLTFTQYLKAVNVRLPKNQDKGK 735
            AA  A S    EPKDVT +E K+L RV++YLC+F+ K+K+ K+  PKLERK KIL +KKNP+A++I+DE G EL+PE++D EL  I+++  ++   I +I+A   KK+   DL++AL  LGKK+TKKE+EDMIWEVDENLDGCVDWEEF LMF RNIKD TGLEP QLFNVVQFMMYD+   G V+VDETMHMLY+RYG++ L++EM+ LFGD L A GD RLTF QYL AV  +LPK    GK
Sbjct:    2 AAVAAASSGKPEPKDVTQDESKQLERVFNYLCDFAAKNKLFKEREPKLERKSKILAYKKNPEAVKIIDETGRELSPEEIDFELRKIDDECADITQRIEKIEAKEEKKIKPRDLLEALGKLGKKATKKEIEDMIWEVDENLDGCVDWEEFQLMFHRNIKDTTGLEPHQLFNVVQFMMYDKDCGGQVSVDETMHMLYSRYGREGLDSEMRNLFGDSLSATGDARLTFEQYLAAVERKLPKRIRGGK 245          
BLAST of mRNA_S-firma_F_contig10828.1109.1 vs. uniprot
Match: A0A7R9ZF54_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZF54_9STRA)

HSP 1 Score: 249 bits (636), Expect = 2.550e-81
Identity = 125/141 (88.65%), Postives = 132/141 (93.62%), Query Frame = 1
Query:  337 DLMDALKALGKKSTKKEVEDMIWEVDENLDGCVDWEEFHLMFQRNIKDKTGLEPFQLFNVVQFMMYDRSNSGAVTVDETMHMLYARYGKDRLEAEMKMLFGDDLRADGDGRLTFTQYLKAVNVRLPKNQDKGKKSGRGRSR 759
            DLMDALKALGK+STKKEVEDMIWEVDENLDGCVDWEEFHLMFQRNIKDKTGLEPFQLFNVVQFMMYDR+NSGAV+VDETMHMLYARYGKDRLEAEMK LFGDDL+ADGDG LTFTQYL+AVNVRLPK + K K + R R R
Sbjct:    2 DLMDALKALGKRSTKKEVEDMIWEVDENLDGCVDWEEFHLMFQRNIKDKTGLEPFQLFNVVQFMMYDRTNSGAVSVDETMHMLYARYGKDRLEAEMKALFGDDLKADGDGCLTFTQYLEAVNVRLPKVEPKKKATSRRRRR 142          
BLAST of mRNA_S-firma_F_contig10828.1109.1 vs. uniprot
Match: A0A2R5GQD3_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQD3_9STRA)

HSP 1 Score: 241 bits (615), Expect = 1.100e-76
Identity = 116/228 (50.88%), Postives = 169/228 (74.12%), Query Frame = 1
Query:   19 MSKEAEEPKDVTSNEEKELRRVYDYLCNFSPKHKIRKDMAPKLERKQKILQFKKNPDAIRIVDEAGVELTPEQLDAELDIINEQLDELEAAIAEIDADPAKKVHAMDLMDALKALGKKSTKKEVEDMIWEVDENLDGCVDWEEFHLMFQRNIKDKTGLEPFQLFNVVQFMMYDRSNSGAVTVDETMHMLYARYGKDRLEAEMKMLFGDDLRA-DGDGRLTFTQYLKAV 699
            M+ +AE  K ++ NEEKEL RVY+ +CN+ PK K+   + P+  R+ +++  +K PD I + ++ G  ++ E+++AE + + +++  LE  +A +D+DP +++   DL + LK LGK ++KKE+E+MIWEVDE+LDG VDWEEF L +QRN+ D TGLEP QLFNV+QFM+YD+  SG VTVDETMHMLY RYG+DRLE +MK+LFG+DL   DGDG L+F++Y  A+
Sbjct:    1 MTADAEGSKGISQNEEKELLRVYNTMCNYQPKSKLYARLQPQRARRDRLVAHRKAPDNIVVTNKEGEAMSSEEIEAEYETLRQEIAALEKEVAVLDSDPQRRIRPADLAECLKTLGKPNSKKEIEEMIWEVDESLDGVVDWEEFKLTYQRNLADTTGLEPCQLFNVIQFMIYDKDGSGKVTVDETMHMLYTRYGRDRLEGQMKLLFGEDLSTQDGDGELSFSEYCVAI 228          
BLAST of mRNA_S-firma_F_contig10828.1109.1 vs. uniprot
Match: A0A7S2UTN0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTN0_9STRA)

HSP 1 Score: 209 bits (532), Expect = 1.720e-63
Identity = 121/256 (47.27%), Postives = 172/256 (67.19%), Query Frame = 1
Query:   19 MSKEAEEPKDVTSNEEKELRRVYDYLCNFSPKHKIRKDMAPKLERKQKIL---QFKKNPDAIRI---VDEAGVELTPEQLD------AEL------------DIINE---QLDELEAAIAEIDADPAKKVHAMDLMDALKALGKKSTKKEVEDMIWEVDENLDGCVDWEEFHLMFQRNIKDKTGLEPFQLFNVVQFMMYDRSNSGAVTVDETMHMLYARYGKDRLEAEMKMLFGDDLRADGD--GRLTFTQYLKAV 699
            M +E + P+++T  EE+EL R Y++LC+F  + K+ K+ APK  R+Q+++   Q  K    IR    +++ G  L  +Q+D      A+L            D IN+   +++ +E+ I  + +DP KK+ A DLM+AL+ LGKK TKKEV DMIWEVDENLDGCVDWEE+ LMFQRNI D+TGLEP +L+N+VQFM+YD  N G V+VD+TM+MLYARYG+ R+E +++ LFG D+R +G   G + F  YL+AV
Sbjct:    2 MQEEEDVPQNITPQEERELVRTYNHLCHFLKRSKLEKEAAPKRARRQELIDKVQTSKKIHEIRQQQELEQNGSALAQQQIDELDSSYADLAPMGSVEMAQMQDDINQLTAEINGIESQIEALRSDPDKKIRAPDLMEALRFLGKKVTKKEVADMIWEVDENLDGCVDWEEYRLMFQRNIFDRTGLEPSKLYNMVQFMIYDHDNKGLVSVDQTMNMLYARYGRSRMEQKLRELFGTDMRENGKQGGEIDFLTYLQAV 257          
BLAST of mRNA_S-firma_F_contig10828.1109.1 vs. uniprot
Match: K3WSY1_GLOUD (EF-hand domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSY1_GLOUD)

HSP 1 Score: 194 bits (492), Expect = 3.500e-58
Identity = 105/222 (47.30%), Postives = 143/222 (64.41%), Query Frame = 1
Query:   34 EEPKDVTSNEEKELRRVYDYLCNFSPKHKIRKDMAPKLERKQKILQFKKNPDAIRIVDEAGVELTPEQLDAELDIINEQLDELEAAIAEIDADPAKKVHAMDLMDALKALGKKSTKKEVEDMIWEVDENLDGCVDWEEFHLMFQRNIKDKTGLEPFQLFNVVQFMMYDRSNSGAVTVDETMHMLYARYGKDRLEAEMKMLFGDDLRADGDGRLTFTQYLKAV 699
            +E K + + EE+ELRRV+D++ ++  K KI   MA   ERKQ++   K NPD   +++E G+++  E+LD E+  I   LD+  A ++ I +   K +   DL +A+K LGK  +KKE+ DMIWE DENLDG VDW+E   MF RN+ DKT LEP  LFNVVQFM YD+ N G +T D+TM +L+ARYG+ +LE  MK LFGD         LTF  YL+ V
Sbjct:    6 DEAKPMIAQEERELRRVFDHVASYRQKKKILTAMAASRERKQRLEASKANPDLSPMLNEKGIKMGDEELDDEIKKIEHGLDKAAAELSAIQSSVTKFIKNEDLYEAIKTLGKVCSKKEIADMIWEADENLDGVVDWDELRAMFNRNLLDKTELEPVNLFNVVQFMTYDKKNCGTITADDTMAILFARYGQSQLEMRMKQLFGDS------DELTFVNYLERV 221          
BLAST of mRNA_S-firma_F_contig10828.1109.1 vs. uniprot
Match: A0A8K1CT54_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT54_PYTOL)

HSP 1 Score: 193 bits (491), Expect = 4.960e-58
Identity = 106/241 (43.98%), Postives = 150/241 (62.24%), Query Frame = 1
Query:   19 MSKEAEEPKDVTSNEEKELRRVYDYLCNFSPKHKIRKDMAPKLERKQKILQFKKNPDAIRIVDEAGVELTPEQLDAELDIINEQLDELEAAIAEIDADPAKKVHAMDLMDALKALGKKSTKKEVEDMIWEVDENLDGCVDWEEFHLMFQRNIKDKTGLEPFQLFNVVQFMMYDRSNSGAVTVDETMHMLYARYGKDRLEAEMKMLFGDDLRADGDGRLTFTQYLKAVNVRLPKNQDKGKKS 741
            M    +E K + + EE+ELRRV+D+L ++  K +I   +A   ER+ ++   + NPD   +V+E G+++T E++D EL  ++  L++    ++ I +   K +   DL DA+KALGK  +KKEV DMIWE DENLDG VDW+E   MF RN+ DKT LEP  LFNVVQFM YD+ N G +T D+TM +L+ARYG+ +LE  MK LFGD         L+F  YL+ V  +   N +   KS
Sbjct:    1 MMSVTDETKGMIAQEERELRRVFDHLASYRQKKRINASIATSKERRARLEASRANPDVSGLVNEKGIKMTREEIDEELRKVDFNLEKHMTELSAIQSSTNKHIKNEDLYDAIKALGKVCSKKEVSDMIWEADENLDGVVDWDELRSMFNRNLMDKTELEPVNLFNVVQFMTYDKKNCGTITADDTMAILFARYGQSQLEMRMKQLFGDS------DELSFVNYLERVGKQRQMNAEARSKS 235          
BLAST of mRNA_S-firma_F_contig10828.1109.1 vs. uniprot
Match: A0A2D4BK57_PYTIN (Outer dynein arm-docking complex subunit 3 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK57_PYTIN)

HSP 1 Score: 193 bits (491), Expect = 6.330e-58
Identity = 105/237 (44.30%), Postives = 152/237 (64.14%), Query Frame = 1
Query:   31 AEEPKDVTSNEEKELRRVYDYLCNFSPKHKIRKDMAPKLERKQKILQFKKNPDAIRIVDEAGVELTPEQLDAELDIINEQLDELEAAIAEIDADPAKKVHAMDLMDALKALGKKSTKKEVEDMIWEVDENLDGCVDWEEFHLMFQRNIKDKTGLEPFQLFNVVQFMMYDRSNSGAVTVDETMHMLYARYGKDRLEAEMKMLFGDDLRADGDGRLTFTQYLKAVNVRLPKNQDKGKKS 741
            ++E K + + EE+ELRRV+D+L ++  K K+   +A   ER+ ++   K NPD   +V++ GV++T E+++ EL  I+  L++L   +A + ++PA+ +   DL DA+KALGK  +KKE+ DMIWE DENLD  VDW E   M  RN+ DKT LEP  LFNVVQFM YD+ N G +T D+TM +L+ARYG+ +LE  MK LFGD         L+F  YL+ V  +  +N +   KS
Sbjct:   13 SDENKGMIAQEERELRRVFDHLASYRQKRKLNATIAAAKERRARLEAGKANPDVSALVNDKGVKMTREEIEEELRKIDYNLEKLSNELAVVQSNPARHIKNEDLYDAIKALGKVCSKKEISDMIWEADENLDSVVDWXELRAMXNRNLMDKTELEPVNLFNVVQFMTYDKKNCGTITADDTMAILFARYGQSQLEMRMKQLFGDS------DELSFVNYLERVGRQRRQNAEARGKS 243          
BLAST of mRNA_S-firma_F_contig10828.1109.1 vs. uniprot
Match: A0A6S9HP31_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HP31_HETAK)

HSP 1 Score: 188 bits (478), Expect = 1.880e-55
Identity = 111/256 (43.36%), Postives = 168/256 (65.62%), Query Frame = 1
Query:   19 MSKEAEEP-KDVTSNEEKELRRVYDYLCNFSPKHKIRKDMAPKLER----KQKILQFKK-NPDAIRIVDEAGVELTPEQLD-----------------AELDIINEQLDELEAAIAEIDADPA----KKVHAMDLMDALKALGKKSTKKEVEDMIWEVDENLDGCVDWEEFHLMFQRNIKDKTGLEPFQLFNVVQFMMYDRSNSGAVTVDETMHMLYARYGKDRLEAEMKMLFGDDLRADGD--GRLTFTQYLKAV 699
            M  + EEP   +T  EE+ELRRV++ LC+F  K ++ + + P++ER    K+K   +++  P+ +  ++E     TPEQL+                 AE   ++ ++++  A +A ++  PA    +K+   DL++A + LG+ +T+K+V+D+IWEVDENLDG VDWEEF LMF+RN+ D+TGLEP QL+++ QFMMYD  N+G VTVD+TM MLYARYGK ++EA++K+LFG D++  G   G +TF QYL AV
Sbjct:    2 MDTQEEEPIVPMTQQEERELRRVFERLCDFHKKMRLAQAIEPRVERMDELKKKYTVYEEPEPEDVWKMEEK----TPEQLEREREARGRLEIPEGPERAEWATLSAEVEQHRAELAALERPPAGAPEQKIRPADLLEAARFLGRPATRKDVQDVIWEVDENLDGAVDWEEFRLMFERNVGDRTGLEPAQLYHMAQFMMYDARNTGRVTVDQTMSMLYARYGKAKMEAKLKILFGRDMKESGTEGGAITFQQYLMAV 253          
BLAST of mRNA_S-firma_F_contig10828.1109.1 vs. uniprot
Match: A0A8J2X371_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X371_9STRA)

HSP 1 Score: 182 bits (463), Expect = 3.080e-53
Identity = 99/226 (43.81%), Postives = 144/226 (63.72%), Query Frame = 1
Query:   28 EAEEPKDVTSNEEKELRRVYDYLCNFSPKHKIRKDMAPKLERKQKILQFKKNPDAIRIVDEAGVELTPEQLDAELDIINEQLDELEAAIAEIDADPAKKVHAMDLMDALKALGKKSTKKEVEDMIWEVDENLDGCVDWEEFHLMFQRNIKDKTGLEPFQLFNVVQFMMYDRSNSGAVTVDETMHMLYARYGKDRLEAEMKMLFGDDLRADGDG--RLTFTQYLKAV 699
            E  E  ++T  EE +LRRV+  LC++  K K+ K + PK ++ +K+ Q   +  A  +V             +E+  +   +++L   + EI+      V  +DL++ALK LG+K+ KK+ E MIWEVDE+LDGCV W+E  LMFQRNI+D TGLEP QLFNVV F+++D    G V+VDETM +LYARYG+ ++E  +KMLFGDD++ +G G   + F  YL+AV
Sbjct:    5 EGNEAAEITPQEENQLRRVHRLLCDYGAKKKVLKLLRPKQDQLEKLRQSADDEQADILVA------------SEIQSLETDVEKLRQDLQEIEKKSDGLVSCVDLLEALKTLGRKAQKKDAEAMIWEVDEDLDGCVSWDEMRLMFQRNIRDTTGLEPSQLFNVVMFLIFDLDEDGMVSVDETMELLYARYGRHKMEDRLKMLFGDDMKEEGKGGGEIDFVTYLRAV 218          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10828.1109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813C532_9DINO1.370e-9563.71TNNC2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A5A8DI08_CAFRO1.490e-9561.07EF-hand domain-containing protein n=2 Tax=Sar TaxI... [more]
A0A7R9ZF54_9STRA2.550e-8188.65Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A2R5GQD3_9STRA1.100e-7650.88Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
A0A7S2UTN0_9STRA1.720e-6347.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3WSY1_GLOUD3.500e-5847.30EF-hand domain-containing protein n=1 Tax=Globispo... [more]
A0A8K1CT54_PYTOL4.960e-5843.98Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A2D4BK57_PYTIN6.330e-5844.30Outer dynein arm-docking complex subunit 3 n=1 Tax... [more]
A0A6S9HP31_HETAK1.880e-5543.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2X371_9STRA3.080e-5343.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10828contigS-firma_F_contig10828:2040..2984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog65071.PYU1_T008075
PFAMsEF-hand_8
Max annot lvl121069|Pythiales
Evalue6.62e-59
EggNOG OGs2CS8I@1|root,2RAUZ@2759|Eukaryota,1MIX0@121069|Pythiales
DescriptionEF-hand domain pair
COG categoryS
Hectar predicted targeting categoryother localisation
Exons4
Model size768
Cds size750
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10828.1109.1prot_S-firma_F_contig10828.1109.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10828 2058..2984 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.9444335-UTR-S-firma_F_contig10828:2039..20571622815625.9444335-UTR-S-firma_F_contig10828:2039..2057Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10828 2040..2057 +
1696949462.6586518-UTR-S-firma_F_contig10828:2039..20571696949462.6586518-UTR-S-firma_F_contig10828:2039..2057Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10828 2040..2057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.957888-CDS-S-firma_F_contig10828:2057..22101622815625.957888-CDS-S-firma_F_contig10828:2057..2210Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10828 2058..2210 +
1696949462.6709867-CDS-S-firma_F_contig10828:2057..22101696949462.6709867-CDS-S-firma_F_contig10828:2057..2210Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10828 2058..2210 +
1622815625.9683352-CDS-S-firma_F_contig10828:2265..23311622815625.9683352-CDS-S-firma_F_contig10828:2265..2331Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10828 2266..2331 +
1696949462.6816921-CDS-S-firma_F_contig10828:2265..23311696949462.6816921-CDS-S-firma_F_contig10828:2265..2331Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10828 2266..2331 +
1622815625.9776084-CDS-S-firma_F_contig10828:2394..26441622815625.9776084-CDS-S-firma_F_contig10828:2394..2644Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10828 2395..2644 +
1696949462.6923208-CDS-S-firma_F_contig10828:2394..26441696949462.6923208-CDS-S-firma_F_contig10828:2394..2644Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10828 2395..2644 +
1622815625.9904478-CDS-S-firma_F_contig10828:2703..29841622815625.9904478-CDS-S-firma_F_contig10828:2703..2984Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10828 2704..2984 +
1696949462.7025657-CDS-S-firma_F_contig10828:2703..29841696949462.7025657-CDS-S-firma_F_contig10828:2703..2984Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10828 2704..2984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10828.1109.1

>prot_S-firma_F_contig10828.1109.1 ID=prot_S-firma_F_contig10828.1109.1|Name=mRNA_S-firma_F_contig10828.1109.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=250bp
MSKEAEEPKDVTSNEEKELRRVYDYLCNFSPKHKIRKDMAPKLERKQKIL
QFKKNPDAIRIVDEAGVELTPEQLDAELDIINEQLDELEAAIAEIDADPA
KKVHAMDLMDALKALGKKSTKKEVEDMIWEVDENLDGCVDWEEFHLMFQR
NIKDKTGLEPFQLFNVVQFMMYDRSNSGAVTVDETMHMLYARYGKDRLEA
EMKMLFGDDLRADGDGRLTFTQYLKAVNVRLPKNQDKGKKSGRGRSRRR*
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mRNA from alignment at S-firma_F_contig10828:2040..2984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10828.1109.1 ID=mRNA_S-firma_F_contig10828.1109.1|Name=mRNA_S-firma_F_contig10828.1109.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=945bp|location=Sequence derived from alignment at S-firma_F_contig10828:2040..2984+ (Sphaerotrichia firma ET2_F female)
GCAGCTGCCTGGGTAGCCATGTCCAAGGAGGCGGAGGAACCTAAGGACGT CACGTCCAATGAGGAGAAGGAGCTGAGGCGTGTGTACGACTACCTCTGCA ACTTTTCCCCAAAGCATAAGATTCGGAAGGACATGGCGCCGAAGCTGGAG CGCAAGCAAAAGATTCTGCAGGTACCCAGGCTCCCTCCCCGTGCCAAACC CTAAACCCTAACCCCCCCACCCCCAGTTCAAGAAGAACCCGGACGCGATT CGCATTGTCGACGAAGCCGGTGTGGAGTTGACGCCTGAGCAAGTGCGCGC GGGGGGGCACCGCCGTAGTGTTGACACGCCACTGACCTCATGTGTGTGCT TGCAGCTGGACGCAGAGCTGGACATCATCAACGAGCAGCTGGACGAGCTG GAGGCTGCCATTGCTGAAATTGACGCGGACCCAGCGAAAAAAGTACATGC CATGGACCTCATGGATGCGCTCAAGGCGCTGGGGAAGAAGTCCACAAAGA AGGAGGTTGAGGACATGATTTGGGAGGTGGACGAAAACCTGGACGGTTGC GTGGACTGGGAGGAGTTCCACTTGATGTTCCAGCGTAACATCAAGGACAA GACTGGTAGGTGGTGTGTGCGCCGGGCTTGCGACGGCTGTGTGTGGTGAC CCTTGTCTGCCCAGGCCTTGAGCCGTTTCAGTTGTTCAACGTCGTGCAGT TCATGATGTACGACCGCAGCAACAGCGGCGCTGTCACCGTTGACGAGACC ATGCACATGTTGTACGCGCGGTACGGCAAGGACAGACTGGAGGCGGAGAT GAAGATGTTGTTTGGGGATGACCTGCGGGCCGACGGCGACGGGCGCCTGA CGTTCACGCAGTACCTCAAGGCCGTCAACGTTCGCCTCCCCAAGAACCAG GACAAGGGGAAGAAGAGCGGCCGGGGGCGGTCACGGCGGCGCTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10828:2040..2984+

>mRNA_S-firma_F_contig10828.1109.1 ID=mRNA_S-firma_F_contig10828.1109.1|Name=mRNA_S-firma_F_contig10828.1109.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1500bp|location=Sequence derived from alignment at S-firma_F_contig10828:2040..2984+ (Sphaerotrichia firma ET2_F female)
ATGTCCAAGGAGGCGGAGGAACCTAAGGACGTCACGTCCAATGAGGAGAA
GGAGCTGAGGCGTGTGTACGACTACCTCTGCAACTTTTCCCCAAAGCATA
AGATTCGGAAGGACATGGCGCCGAAGCTGGAGCGCAAGCAAAAGATTCTG
CAGATGTCCAAGGAGGCGGAGGAACCTAAGGACGTCACGTCCAATGAGGA
GAAGGAGCTGAGGCGTGTGTACGACTACCTCTGCAACTTTTCCCCAAAGC
ATAAGATTCGGAAGGACATGGCGCCGAAGCTGGAGCGCAAGCAAAAGATT
CTGCAGTTCAAGAAGAACCCGGACGCGATTCGCATTGTCGACGAAGCCGG
TGTGGAGTTGACGCCTGAGCAATTCAAGAAGAACCCGGACGCGATTCGCA
TTGTCGACGAAGCCGGTGTGGAGTTGACGCCTGAGCAACTGGACGCAGAG
CTGGACATCATCAACGAGCAGCTGGACGAGCTGGAGGCTGCCATTGCTGA
AATTGACGCGGACCCAGCGAAAAAAGTACATGCCATGGACCTCATGGATG
CGCTCAAGGCGCTGGGGAAGAAGTCCACAAAGAAGGAGGTTGAGGACATG
ATTTGGGAGGTGGACGAAAACCTGGACGGTTGCGTGGACTGGGAGGAGTT
CCACTTGATGTTCCAGCGTAACATCAAGGACAAGACTGCTGGACGCAGAG
CTGGACATCATCAACGAGCAGCTGGACGAGCTGGAGGCTGCCATTGCTGA
AATTGACGCGGACCCAGCGAAAAAAGTACATGCCATGGACCTCATGGATG
CGCTCAAGGCGCTGGGGAAGAAGTCCACAAAGAAGGAGGTTGAGGACATG
ATTTGGGAGGTGGACGAAAACCTGGACGGTTGCGTGGACTGGGAGGAGTT
CCACTTGATGTTCCAGCGTAACATCAAGGACAAGACTGGCCTTGAGCCGT
TTCAGTTGTTCAACGTCGTGCAGTTCATGATGTACGACCGCAGCAACAGC
GGCGCTGTCACCGTTGACGAGACCATGCACATGTTGTACGCGCGGTACGG
CAAGGACAGACTGGAGGCGGAGATGAAGATGTTGTTTGGGGATGACCTGC
GGGCCGACGGCGACGGGCGCCTGACGTTCACGCAGTACCTCAAGGCCGTC
AACGTTCGCCTCCCCAAGAACCAGGACAAGGGGAAGAAGAGCGGCCGGGG
GCGGTCACGGCGGCGCTAGGCCTTGAGCCGTTTCAGTTGTTCAACGTCGT
GCAGTTCATGATGTACGACCGCAGCAACAGCGGCGCTGTCACCGTTGACG
AGACCATGCACATGTTGTACGCGCGGTACGGCAAGGACAGACTGGAGGCG
GAGATGAAGATGTTGTTTGGGGATGACCTGCGGGCCGACGGCGACGGGCG
CCTGACGTTCACGCAGTACCTCAAGGCCGTCAACGTTCGCCTCCCCAAGA
ACCAGGACAAGGGGAAGAAGAGCGGCCGGGGGCGGTCACGGCGGCGCTAG
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