mRNA_S-firma_F_contig10822.1103.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10822.1103.1
Unique NamemRNA_S-firma_F_contig10822.1103.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A5A8D5B7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D5B7_CAFRO)

HSP 1 Score: 199 bits (505), Expect = 6.070e-57
Identity = 88/143 (61.54%), Postives = 115/143 (80.42%), Query Frame = 1
Query:    4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
            S V++G +++R+VLDEAH IKN  TD +++C A++A HRW LTGTP+ NSL+DL SL+RF+RH+PW EP WWRRVIA P++ GDPRA+ TL+A+L PLLLRRTK M DVDGRPIV LPP+   +V L LSESE+ FY  +Y++
Sbjct:  221 SAVVYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFEAGDPRALPTLQALLRPLLLRRTKGMRDVDGRPIVVLPPKSEELVWLALSESERAFYDAIYSR 363          
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A5A8CW93_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CW93_CAFRO)

HSP 1 Score: 199 bits (505), Expect = 8.330e-57
Identity = 88/143 (61.54%), Postives = 115/143 (80.42%), Query Frame = 1
Query:    4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
            S V++G +++R+VLDEAH IKN  TD +++C A++A HRW LTGTP+ NSL+DL SL+RF+RH+PW EP WWRRVIA P++ GDPRA+ TL+A+L PLLLRRTK M DVDGRPIV LPP+   +V L LSESE+ FY  +Y++
Sbjct:   52 SAVVYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFEAGDPRALPTLQALLRPLLLRRTKGMRDVDGRPIVVLPPKSEELVWLALSESERAFYDAIYSR 194          
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A5A8CAC5_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CAC5_CAFRO)

HSP 1 Score: 199 bits (505), Expect = 2.220e-56
Identity = 88/143 (61.54%), Postives = 115/143 (80.42%), Query Frame = 1
Query:    4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
            S V++G +++R+VLDEAH IKN  TD +++C A++A HRW LTGTP+ NSL+DL SL+RF+RH+PW EP WWRRVIA P++ GDPRA+ TL+A+L PLLLRRTK M DVDGRPIV LPP+   +V L LSESE+ FY  +Y++
Sbjct:  255 SAVVYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFEAGDPRALPTLQALLRPLLLRRTKGMRDVDGRPIVVLPPKSEELVWLALSESERAFYDAIYSR 397          
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A7S3BZB8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BZB8_9VIRI)

HSP 1 Score: 163 bits (413), Expect = 6.860e-49
Identity = 79/140 (56.43%), Postives = 98/140 (70.00%), Query Frame = 1
Query:   13 LFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
            L  V++ R+VLDEAH IK +GT A +A  AL +  RWCLTGTPI NSLEDL SLL+FLR EPWC   WW +++  P D  DP+AM  LR +L PL LRRTKD L  DG PI+TLPP  +R+VEL  ++ E DFY  L+ +
Sbjct:    6 LLQVRWWRVVLDEAHSIKGRGTVAHRAACALHSERRWCLTGTPIQNSLEDLYSLLKFLRVEPWCHWGWWSKLVQAPADANDPKAMALLRGLLVPLTLRRTKDTLGSDGAPILTLPPADIRLVELDPTDEECDFYQALFRR 145          
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A8K1CQ45_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ45_PYTOL)

HSP 1 Score: 177 bits (449), Expect = 8.870e-49
Identity = 77/143 (53.85%), Postives = 105/143 (73.43%), Query Frame = 1
Query:    4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
            S VL G ++ R++LDEAH IKN+ T   +AC ALQA HRWCLTGTPI NSL DL SLL FLR+EPW    WW+RVIA+P+++GD +A+  L+ +L P+LLRRTK   D  G+ IV LPP+H+ + +L  +E E++FY  +Y++
Sbjct:  555 SSVLLGTEWDRVILDEAHSIKNRATTYFRACAALQAVHRWCLTGTPIQNSLSDLFSLLCFLRYEPWSRVAWWKRVIANPFEQGDDQALVRLKVILTPILLRRTKHSRDAHGKNIVELPPKHIEIAKLQFTEEEREFYQAVYDR 697          
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A7S0CPX5_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CPX5_9EUKA)

HSP 1 Score: 174 bits (442), Expect = 3.440e-48
Identity = 79/143 (55.24%), Postives = 104/143 (72.73%), Query Frame = 1
Query:    4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
            S  L G+ + R++LDEAH I+N  T++AKA  AL++ HRWCLTGTPI N L+DL SLL FL+ EPW    WW+RVI  P++KGD RA+T L+A+LHPLLLRRTK M D +G+ I+ +P     +V+L  SE EKDFYT L+ +
Sbjct:  291 SGTLHGLMWWRVILDEAHEIRNSSTESAKAVFALESRHRWCLTGTPIQNRLDDLFSLLHFLKEEPWANSGWWKRVIRTPHEKGDERAITRLKAVLHPLLLRRTKKMTDSEGKRILEIPDMTTHIVKLKFSEQEKDFYTALFTR 433          
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A7S0CQB2_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CQB2_9EUKA)

HSP 1 Score: 174 bits (442), Expect = 7.780e-48
Identity = 79/143 (55.24%), Postives = 104/143 (72.73%), Query Frame = 1
Query:    4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
            S  L G+ + R++LDEAH I+N  T++AKA  AL++ HRWCLTGTPI N L+DL SLL FL+ EPW    WW+RVI  P++KGD RA+T L+A+LHPLLLRRTK M D +G+ I+ +P     +V+L  SE EKDFYT L+ +
Sbjct:  608 SGTLHGLMWWRVILDEAHEIRNSSTESAKAVFALESRHRWCLTGTPIQNRLDDLFSLLHFLKEEPWANSGWWKRVIRTPHEKGDERAITRLKAVLHPLLLRRTKKMTDSEGKRILEIPDMTTHIVKLKFSEQEKDFYTALFTR 750          
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: UPI00090132DF (putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 isoform X2 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI00090132DF)

HSP 1 Score: 160 bits (406), Expect = 7.180e-47
Identity = 75/144 (52.08%), Postives = 100/144 (69.44%), Query Frame = 1
Query:    1 KSPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
            +S +   V + RIVLDEAH IK+  T +A+A   L A  RWCLTGTP+ N+L DL SLL FL  EPWC   WW ++I  PY+ GD RA+  ++A+L PL+LRRTK+  D +GRPI+ LPP +++V+E   SE+E+DFY  LY K
Sbjct:   87 ESSIFHEVDWHRIVLDEAHTIKSWRTMSARAAFTLSAHCRWCLTGTPLQNNLPDLYSLLCFLHVEPWCNWAWWNKLIQRPYENGDQRALKLIKAILRPLMLRRTKETKDKEGRPILILPPTYIQVIECEQSEAERDFYDALYKK 230          
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: UPI001FB0C8CF (DNA repair protein RAD5B n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0C8CF)

HSP 1 Score: 171 bits (432), Expect = 1.740e-46
Identity = 75/143 (52.45%), Postives = 104/143 (72.73%), Query Frame = 1
Query:    4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
            + +   +++QR+VLDEAH IK+  T  A+A   L +  RWCLTGTP+ NSLEDL SLL FLR EPWC  LWW++ I +PY+ GDP+ +  LRA+L PL+LRRTKD  D++GRPI+ LPP  ++V+E   S++E+DFY  L+ +
Sbjct:  594 NSIFHRIEWQRVVLDEAHTIKSSKTQIAQATFKLSSQCRWCLTGTPLQNSLEDLYSLLCFLRIEPWCNWLWWKKKIQNPYENGDPKGLKILRAILRPLMLRRTKDTTDINGRPIIVLPPTDIKVIECQQSQAERDFYDALFQR 736          
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A2Z7AW24_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AW24_9LAMI)

HSP 1 Score: 167 bits (423), Expect = 2.360e-45
Identity = 78/143 (54.55%), Postives = 100/143 (69.93%), Query Frame = 1
Query:    4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
            S +   V++ RIVLDEAH IK+  T AA+A  AL +  RWCLTGTP+ N LEDL SLL FL  EPWC   WW +++  PYD GDPR M  ++A+L PL+LRRTK+  D DGRPI+ LPP  V+V++   SE+E+DFY  L+ K
Sbjct:  412 SSIFHRVEWHRIVLDEAHTIKSSKTLAAQAAFALSSYCRWCLTGTPLQNKLEDLYSLLCFLHVEPWCNWTWWNKLVQRPYDNGDPRGMKLVKAILRPLMLRRTKESKDKDGRPILVLPPTDVQVIDCEQSEAERDFYEALFKK 554          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8D5B7_CAFRO6.070e-5761.54Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CW93_CAFRO8.330e-5761.54Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CAC5_CAFRO2.220e-5661.54Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A7S3BZB8_9VIRI6.860e-4956.43Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A8K1CQ45_PYTOL8.870e-4953.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S0CPX5_9EUKA3.440e-4855.24Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S0CQB2_9EUKA7.780e-4855.24Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
UPI00090132DF7.180e-4752.08putative SWI/SNF-related matrix-associated actin-d... [more]
UPI001FB0C8CF1.740e-4652.45DNA repair protein RAD5B n=1 Tax=Impatiens glandul... [more]
A0A2Z7AW24_9LAMI2.360e-4554.55Uncharacterized protein n=1 Tax=Dorcoceras hygrome... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10822contigS-firma_F_contig10822:2953..3510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FJC4
PFAMsHelicase_C,SNF2_N,zf-C3HC4_3,zf-RING_UBOX
Max annot lvl2759|Eukaryota
KEGG koko:K15173,ko:K15711
KEGG Pathwayko04918,map04918
Evalue7.6e-46
EggNOG OGsCOG0553@1|root,KOG1001@2759|Eukaryota
EC2.3.2.27
Descriptionhelicase activity
COG categoryKL
BRITEko00000,ko00001,ko01000,ko03021,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size432
Cds size432
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10822.1103.1prot_S-firma_F_contig10822.1103.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10822 2953..3510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.396016-CDS-S-firma_F_contig10822:2952..30061622815625.396016-CDS-S-firma_F_contig10822:2952..3006Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10822 2953..3006 +
1696949462.267474-CDS-S-firma_F_contig10822:2952..30061696949462.267474-CDS-S-firma_F_contig10822:2952..3006Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10822 2953..3006 +
1622815625.4129076-CDS-S-firma_F_contig10822:3074..32081622815625.4129076-CDS-S-firma_F_contig10822:3074..3208Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10822 3075..3208 +
1696949462.2829144-CDS-S-firma_F_contig10822:3074..32081696949462.2829144-CDS-S-firma_F_contig10822:3074..3208Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10822 3075..3208 +
1622815625.4256825-CDS-S-firma_F_contig10822:3266..35101622815625.4256825-CDS-S-firma_F_contig10822:3266..3510Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10822 3267..3510 +
1696949462.2934053-CDS-S-firma_F_contig10822:3266..35101696949462.2934053-CDS-S-firma_F_contig10822:3266..3510Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10822 3267..3510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10822.1103.1

>prot_S-firma_F_contig10822.1103.1 ID=prot_S-firma_F_contig10822.1103.1|Name=mRNA_S-firma_F_contig10822.1103.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=144bp
KSPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISN
SLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLL
LRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK
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mRNA from alignment at S-firma_F_contig10822:2953..3510+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10822.1103.1 ID=mRNA_S-firma_F_contig10822.1103.1|Name=mRNA_S-firma_F_contig10822.1103.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=558bp|location=Sequence derived from alignment at S-firma_F_contig10822:2953..3510+ (Sphaerotrichia firma ET2_F female)
AAGTCCCCCGTCCTGTTTGGCGTCCAATTTCAGCGCATCGTGTTGGACGA AGCGGTGGGGATGGGGCTTCGCGGGAGGCGCCCACTGCAACTGCAACCCT TCTCACACGCACCCCTTCGCAGCACCGCATCAAAAACAAGGGCACCGACG CGGCCAAGGCGTGCACCGCCCTGCAGGCCTGCCACCGATGGTGCTTGACG GGCACCCCAATCTCCAACAGCCTTGAGGATCTCCTGTCCCTTCTGCGCTT CCTGAGGTGTGAATGCGTGTGTCCCTGCACCACTCACTGTCACACTCCCC ACCGTGTGCAACAGGCACGAGCCGTGGTGTGAGCCGCTGTGGTGGCGCCG CGTCATTGCAGACCCCTACGACAAGGGGGACCCGCGTGCCATGACCACCC TGCGCGCCATGCTGCACCCCCTCCTGCTCCGCCGCACCAAGGACATGCTG GACGTTGACGGGCGCCCCATTGTGACCCTGCCACCCCGCCATGTTCGTGT TGTGGAACTGGTGCTGTCCGAGTCGGAGAAGGACTTTTACACCAACCTGT ACAACAAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10822:2953..3510+

>mRNA_S-firma_F_contig10822.1103.1 ID=mRNA_S-firma_F_contig10822.1103.1|Name=mRNA_S-firma_F_contig10822.1103.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=864bp|location=Sequence derived from alignment at S-firma_F_contig10822:2953..3510+ (Sphaerotrichia firma ET2_F female)
AAGTCCCCCGTCCTGTTTGGCGTCCAATTTCAGCGCATCGTGTTGGACGA
AGCGAAGTCCCCCGTCCTGTTTGGCGTCCAATTTCAGCGCATCGTGTTGG
ACGAAGCGCACCGCATCAAAAACAAGGGCACCGACGCGGCCAAGGCGTGC
ACCGCCCTGCAGGCCTGCCACCGATGGTGCTTGACGGGCACCCCAATCTC
CAACAGCCTTGAGGATCTCCTGTCCCTTCTGCGCTTCCTGAGCACCGCAT
CAAAAACAAGGGCACCGACGCGGCCAAGGCGTGCACCGCCCTGCAGGCCT
GCCACCGATGGTGCTTGACGGGCACCCCAATCTCCAACAGCCTTGAGGAT
CTCCTGTCCCTTCTGCGCTTCCTGAGGCACGAGCCGTGGTGTGAGCCGCT
GTGGTGGCGCCGCGTCATTGCAGACCCCTACGACAAGGGGGACCCGCGTG
CCATGACCACCCTGCGCGCCATGCTGCACCCCCTCCTGCTCCGCCGCACC
AAGGACATGCTGGACGTTGACGGGCGCCCCATTGTGACCCTGCCACCCCG
CCATGTTCGTGTTGTGGAACTGGTGCTGTCCGAGTCGGAGAAGGACTTTT
ACACCAACCTGTACAACAAAGCACGAGCCGTGGTGTGAGCCGCTGTGGTG
GCGCCGCGTCATTGCAGACCCCTACGACAAGGGGGACCCGCGTGCCATGA
CCACCCTGCGCGCCATGCTGCACCCCCTCCTGCTCCGCCGCACCAAGGAC
ATGCTGGACGTTGACGGGCGCCCCATTGTGACCCTGCCACCCCGCCATGT
TCGTGTTGTGGAACTGGTGCTGTCCGAGTCGGAGAAGGACTTTTACACCA
ACCTGTACAACAAA
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