mRNA_S-firma_F_contig10822.1103.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A5A8D5B7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D5B7_CAFRO) HSP 1 Score: 199 bits (505), Expect = 6.070e-57 Identity = 88/143 (61.54%), Postives = 115/143 (80.42%), Query Frame = 1
Query: 4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
S V++G +++R+VLDEAH IKN TD +++C A++A HRW LTGTP+ NSL+DL SL+RF+RH+PW EP WWRRVIA P++ GDPRA+ TL+A+L PLLLRRTK M DVDGRPIV LPP+ +V L LSESE+ FY +Y++
Sbjct: 221 SAVVYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFEAGDPRALPTLQALLRPLLLRRTKGMRDVDGRPIVVLPPKSEELVWLALSESERAFYDAIYSR 363
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A5A8CW93_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CW93_CAFRO) HSP 1 Score: 199 bits (505), Expect = 8.330e-57 Identity = 88/143 (61.54%), Postives = 115/143 (80.42%), Query Frame = 1
Query: 4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
S V++G +++R+VLDEAH IKN TD +++C A++A HRW LTGTP+ NSL+DL SL+RF+RH+PW EP WWRRVIA P++ GDPRA+ TL+A+L PLLLRRTK M DVDGRPIV LPP+ +V L LSESE+ FY +Y++
Sbjct: 52 SAVVYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFEAGDPRALPTLQALLRPLLLRRTKGMRDVDGRPIVVLPPKSEELVWLALSESERAFYDAIYSR 194
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A5A8CAC5_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CAC5_CAFRO) HSP 1 Score: 199 bits (505), Expect = 2.220e-56 Identity = 88/143 (61.54%), Postives = 115/143 (80.42%), Query Frame = 1
Query: 4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
S V++G +++R+VLDEAH IKN TD +++C A++A HRW LTGTP+ NSL+DL SL+RF+RH+PW EP WWRRVIA P++ GDPRA+ TL+A+L PLLLRRTK M DVDGRPIV LPP+ +V L LSESE+ FY +Y++
Sbjct: 255 SAVVYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFEAGDPRALPTLQALLRPLLLRRTKGMRDVDGRPIVVLPPKSEELVWLALSESERAFYDAIYSR 397
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A7S3BZB8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BZB8_9VIRI) HSP 1 Score: 163 bits (413), Expect = 6.860e-49 Identity = 79/140 (56.43%), Postives = 98/140 (70.00%), Query Frame = 1
Query: 13 LFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
L V++ R+VLDEAH IK +GT A +A AL + RWCLTGTPI NSLEDL SLL+FLR EPWC WW +++ P D DP+AM LR +L PL LRRTKD L DG PI+TLPP +R+VEL ++ E DFY L+ +
Sbjct: 6 LLQVRWWRVVLDEAHSIKGRGTVAHRAACALHSERRWCLTGTPIQNSLEDLYSLLKFLRVEPWCHWGWWSKLVQAPADANDPKAMALLRGLLVPLTLRRTKDTLGSDGAPILTLPPADIRLVELDPTDEECDFYQALFRR 145
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A8K1CQ45_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ45_PYTOL) HSP 1 Score: 177 bits (449), Expect = 8.870e-49 Identity = 77/143 (53.85%), Postives = 105/143 (73.43%), Query Frame = 1
Query: 4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
S VL G ++ R++LDEAH IKN+ T +AC ALQA HRWCLTGTPI NSL DL SLL FLR+EPW WW+RVIA+P+++GD +A+ L+ +L P+LLRRTK D G+ IV LPP+H+ + +L +E E++FY +Y++
Sbjct: 555 SSVLLGTEWDRVILDEAHSIKNRATTYFRACAALQAVHRWCLTGTPIQNSLSDLFSLLCFLRYEPWSRVAWWKRVIANPFEQGDDQALVRLKVILTPILLRRTKHSRDAHGKNIVELPPKHIEIAKLQFTEEEREFYQAVYDR 697
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A7S0CPX5_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CPX5_9EUKA) HSP 1 Score: 174 bits (442), Expect = 3.440e-48 Identity = 79/143 (55.24%), Postives = 104/143 (72.73%), Query Frame = 1
Query: 4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
S L G+ + R++LDEAH I+N T++AKA AL++ HRWCLTGTPI N L+DL SLL FL+ EPW WW+RVI P++KGD RA+T L+A+LHPLLLRRTK M D +G+ I+ +P +V+L SE EKDFYT L+ +
Sbjct: 291 SGTLHGLMWWRVILDEAHEIRNSSTESAKAVFALESRHRWCLTGTPIQNRLDDLFSLLHFLKEEPWANSGWWKRVIRTPHEKGDERAITRLKAVLHPLLLRRTKKMTDSEGKRILEIPDMTTHIVKLKFSEQEKDFYTALFTR 433
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A7S0CQB2_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CQB2_9EUKA) HSP 1 Score: 174 bits (442), Expect = 7.780e-48 Identity = 79/143 (55.24%), Postives = 104/143 (72.73%), Query Frame = 1
Query: 4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
S L G+ + R++LDEAH I+N T++AKA AL++ HRWCLTGTPI N L+DL SLL FL+ EPW WW+RVI P++KGD RA+T L+A+LHPLLLRRTK M D +G+ I+ +P +V+L SE EKDFYT L+ +
Sbjct: 608 SGTLHGLMWWRVILDEAHEIRNSSTESAKAVFALESRHRWCLTGTPIQNRLDDLFSLLHFLKEEPWANSGWWKRVIRTPHEKGDERAITRLKAVLHPLLLRRTKKMTDSEGKRILEIPDMTTHIVKLKFSEQEKDFYTALFTR 750
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: UPI00090132DF (putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 isoform X2 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI00090132DF) HSP 1 Score: 160 bits (406), Expect = 7.180e-47 Identity = 75/144 (52.08%), Postives = 100/144 (69.44%), Query Frame = 1
Query: 1 KSPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
+S + V + RIVLDEAH IK+ T +A+A L A RWCLTGTP+ N+L DL SLL FL EPWC WW ++I PY+ GD RA+ ++A+L PL+LRRTK+ D +GRPI+ LPP +++V+E SE+E+DFY LY K
Sbjct: 87 ESSIFHEVDWHRIVLDEAHTIKSWRTMSARAAFTLSAHCRWCLTGTPLQNNLPDLYSLLCFLHVEPWCNWAWWNKLIQRPYENGDQRALKLIKAILRPLMLRRTKETKDKEGRPILILPPTYIQVIECEQSEAERDFYDALYKK 230
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: UPI001FB0C8CF (DNA repair protein RAD5B n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0C8CF) HSP 1 Score: 171 bits (432), Expect = 1.740e-46 Identity = 75/143 (52.45%), Postives = 104/143 (72.73%), Query Frame = 1
Query: 4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
+ + +++QR+VLDEAH IK+ T A+A L + RWCLTGTP+ NSLEDL SLL FLR EPWC LWW++ I +PY+ GDP+ + LRA+L PL+LRRTKD D++GRPI+ LPP ++V+E S++E+DFY L+ +
Sbjct: 594 NSIFHRIEWQRVVLDEAHTIKSSKTQIAQATFKLSSQCRWCLTGTPLQNSLEDLYSLLCFLRIEPWCNWLWWKKKIQNPYENGDPKGLKILRAILRPLMLRRTKDTTDINGRPIIVLPPTDIKVIECQQSQAERDFYDALFQR 736
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Match: A0A2Z7AW24_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AW24_9LAMI) HSP 1 Score: 167 bits (423), Expect = 2.360e-45 Identity = 78/143 (54.55%), Postives = 100/143 (69.93%), Query Frame = 1
Query: 4 SPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNSLEDLLSLLRFLRHEPWCEPLWWRRVIADPYDKGDPRAMTTLRAMLHPLLLRRTKDMLDVDGRPIVTLPPRHVRVVELVLSESEKDFYTNLYNK 432
S + V++ RIVLDEAH IK+ T AA+A AL + RWCLTGTP+ N LEDL SLL FL EPWC WW +++ PYD GDPR M ++A+L PL+LRRTK+ D DGRPI+ LPP V+V++ SE+E+DFY L+ K
Sbjct: 412 SSIFHRVEWHRIVLDEAHTIKSSKTLAAQAAFALSSYCRWCLTGTPLQNKLEDLYSLLCFLHVEPWCNWTWWNKLVQRPYDNGDPRGMKLVKAILRPLMLRRTKESKDKDGRPILVLPPTDVQVIDCEQSEAERDFYEALFKK 554 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10822.1103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10822.1103.1 >prot_S-firma_F_contig10822.1103.1 ID=prot_S-firma_F_contig10822.1103.1|Name=mRNA_S-firma_F_contig10822.1103.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=144bp KSPVLFGVQFQRIVLDEAHRIKNKGTDAAKACTALQACHRWCLTGTPISNback to top mRNA from alignment at S-firma_F_contig10822:2953..3510+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10822.1103.1 ID=mRNA_S-firma_F_contig10822.1103.1|Name=mRNA_S-firma_F_contig10822.1103.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=558bp|location=Sequence derived from alignment at S-firma_F_contig10822:2953..3510+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10822:2953..3510+ >mRNA_S-firma_F_contig10822.1103.1 ID=mRNA_S-firma_F_contig10822.1103.1|Name=mRNA_S-firma_F_contig10822.1103.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=864bp|location=Sequence derived from alignment at S-firma_F_contig10822:2953..3510+ (Sphaerotrichia firma ET2_F female)back to top |