mRNA_S-firma_F_contig10762.1026.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10762.1026.1
Unique NamemRNA_S-firma_F_contig10762.1026.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10762.1026.1 vs. uniprot
Match: A0A6H5K591_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K591_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.210e-27
Identity = 69/110 (62.73%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:  310 DRSSSGSVASVSSGKSMCSVYSDGEEG--GWTGIEWDNLNAYTVAQLKEFLRRRLLPVSGKKEILVNRLLQAARDVGHLPQVPLSPAPTSPSGSDLSFSLRGRGTPAATA 633
            +R S GS AS SS  ++ SVYS+  EG  GW+GI++D+LN++T AQLK+FLRR  LPVSGKKE+L+NRL+QAARD GHLPQVP    P+SP+GSD SFSL G   PAA A
Sbjct:  404 ERLSCGSAASSSSRITVLSVYSEAGEGTDGWSGIDFDHLNSHTNAQLKDFLRRHNLPVSGKKEVLINRLVQAARDSGHLPQVP----PSSPAGSDFSFSLPGLDAPAAAA 509
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BLAST of mRNA_S-firma_F_contig10762.1026.1 vs. uniprot
Match: D8LMX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX1_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.460e-27
Identity = 67/108 (62.04%), Postives = 82/108 (75.93%), Query Frame = 1 
Query:  310 DRSSSGSVASVSSGKSMCSVYSDGEEG--GWTGIEWDNLNAYTVAQLKEFLRRRLLPVSGKKEILVNRLLQAARDVGHLPQVPLSPAPTSPSGSDLSFSLRGRGTPAA 627
            +R S GS AS SS  ++ SVYS+  EG  GW+GI+WD+L+ YT+ QLK+FLRR  LPVSGKK +L+NRL+QAARD GHLPQVP    P+SP+GSD SFSL G   PAA
Sbjct: 1132 ERLSCGSAASSSSRVTVLSVYSEDGEGTDGWSGIDWDHLHFYTIPQLKDFLRRHHLPVSGKKGVLINRLVQAARDSGHLPQVP----PSSPAGSDFSFSLPGLDAPAA 1235
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10762.1026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K591_9PHAE1.210e-2762.73SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMX1_ECTSI2.460e-2762.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10762contigS-firma_F_contig10762:3433..4781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LMX1
PFAMsKinesin
Max annot lvl2759|Eukaryota
KEGG koko:K10395
Evalue4.03e-28
EggNOG OGsCOG5059@1|root,KOG0244@2759|Eukaryota
Descriptionmicrotubule motor activity
COG categoryZ
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size683
Cds size681
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10762.1026.1prot_S-firma_F_contig10762.1026.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10762 3433..4781 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.784682-CDS-S-firma_F_contig10762:3432..36811622815617.784682-CDS-S-firma_F_contig10762:3432..3681Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10762 3433..3681 -
1696949457.1152563-CDS-S-firma_F_contig10762:3432..36811696949457.1152563-CDS-S-firma_F_contig10762:3432..3681Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10762 3433..3681 -
1622815617.7997499-CDS-S-firma_F_contig10762:4072..42961622815617.7997499-CDS-S-firma_F_contig10762:4072..4296Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10762 4073..4296 -
1696949457.1286194-CDS-S-firma_F_contig10762:4072..42961696949457.1286194-CDS-S-firma_F_contig10762:4072..4296Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10762 4073..4296 -
1622815617.8166933-CDS-S-firma_F_contig10762:4326..43651622815617.8166933-CDS-S-firma_F_contig10762:4326..4365Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10762 4327..4365 -
1696949457.1381485-CDS-S-firma_F_contig10762:4326..43651696949457.1381485-CDS-S-firma_F_contig10762:4326..4365Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10762 4327..4365 -
1622815617.8288333-CDS-S-firma_F_contig10762:4612..47811622815617.8288333-CDS-S-firma_F_contig10762:4612..4781Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10762 4613..4781 -
1696949457.1470678-CDS-S-firma_F_contig10762:4612..47811696949457.1470678-CDS-S-firma_F_contig10762:4612..4781Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10762 4613..4781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10762.1026.1

>prot_S-firma_F_contig10762.1026.1 ID=prot_S-firma_F_contig10762.1026.1|Name=mRNA_S-firma_F_contig10762.1026.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=227bp
VTCAKGEQTEEKEEEEEEAGGRFEQGERSFIVISDTEEEEEEDDDDDDDD
DEEWLPDALVASKKRSSSNRGVKGRYDDPGPAGGGSSSTGRGGRTSGDGG
GKSDRSSSGSVASVSSGKSMCSVYSDGEEGGWTGIEWDNLNAYTVAQLKE
FLRRRLLPVSGKKEILVNRLLQAARDVGHLPQVPLSPAPTSPSGSDLSFS
LRGRGTPAATAAASVDGHGSRTEEAKA
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mRNA from alignment at S-firma_F_contig10762:3433..4781-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10762.1026.1 ID=mRNA_S-firma_F_contig10762.1026.1|Name=mRNA_S-firma_F_contig10762.1026.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1349bp|location=Sequence derived from alignment at S-firma_F_contig10762:3433..4781- (Sphaerotrichia firma ET2_F female)
GTTACGTGTGCGAAGGGGGAGCAGACGGAGGAGAAAGAGGAGGAGGAGGA
GGAGGCCGGAGGGCGGTTTGAGCAGGGAGAGCGGTCGTTCATCGTCATCA
GTGACACGGAGGAAGAGGAGGAGGAAGATGATGATGACGACGACGACGAC
GACGAGGAATGGTTGCCGGGTGAGGCAAGCACAACGAGATCGTAGACGCA
AGGGCGGTCGACGGATGATGCTGTCTAGTTAAAAAGGGGGGGGAGAGTGA
CGAGAGTACATGAAAAGGGTCCTCGCCCCGATCGGCGGTCGTTCAGCTGG
AGCGCTTTCGCGTTGGGTGAGCTCAGGCTGTCCCCAGATAGGTGAATTTT
CTTACCCCCGTCTGCGCCCTTCCTCGCATGCACGCCGCGTCTTCGTTCAC
GTGACAACCCCACCAGACGCCCTGGTCGCCTCCAAGAAGCGCTCCTCCTC
GAACAGCACCGCCGCATCGGGAAGCGGAGGGCGAGGAGGGGTAAAGGGTA
GATACGACGACCCCGGGCCGGCCGGTGGCGGCAGCAGCAGCACGGGGAGA
GGAGGCCGCACCTCTGGAGATGGAGGCGGCAAGAGCGATCGATCCTCGTC
TGGGTCGGTCGCGTCGGTTTCCTCCGGGAAGTCCATGTGCTCGGTCTACA
GCGACGGCGAGGAGGGAGGGTGGACCGGGATCGAATGGGACAACTTGAAC
GCTTACACGGTGAGAAGTGATTGCAATACCGTTTCTCTTTGGCGAGGGTA
CTAGTCGTTCTGTGCTTGGGGACTATTAATAGCGTCTTTCGGCTTGTTGC
CTTTTGCAGAAACATGAATCTAATGTCTCTACGGAAGTACCGATGTTTCG
AGCGCCACGGCATCGTGGGCCTAAAAACATGAGGACACATGTAGTCTGTG
CTACCCAAGGGACCCTCAAGTCATAACTGTTGTCAGAAGCATACTCGTAG
AACACGGCGGGACAGCTACGAGAGTCACGTTCTGGAATTCGTGCTTGTGT
CCCTGCTCAAATGCCGTCGGTTGGCAACTAACTTTTTGCTTCGGTCCGCG
CCCACACGTGTAATGTCCACACTGCTACTCTGAACCACATGGCTCGACAG
GTCGCTCAGCTCAAGGAATTCCTCCGGCGCCGCCTTCTCCCCGTCTCGGG
CAAGAAGGAGATCCTCGTCAACCGTCTGCTCCAGGCCGCTCGCGACGTCG
GTCACCTCCCGCAGGTACCTCTTTCGCCTGCTCCGACGTCTCCCTCCGGC
TCGGACTTGTCTTTCTCTCTTCGCGGCCGAGGAACCCCCGCCGCCACCGC
AGCCGCTTCTGTCGACGGCCACGGCAGCCGCACTGAAGAAGCAAAGGCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10762:3433..4781-

>mRNA_S-firma_F_contig10762.1026.1 ID=mRNA_S-firma_F_contig10762.1026.1|Name=mRNA_S-firma_F_contig10762.1026.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1362bp|location=Sequence derived from alignment at S-firma_F_contig10762:3433..4781- (Sphaerotrichia firma ET2_F female)
GTTACGTGTGCGAAGGGGGAGCAGACGGAGGAGAAAGAGGAGGAGGAGGA
GGAGGCCGGAGGGCGGTTTGAGCAGGGAGAGCGGTCGTTCATCGTCATCA
GTGACACGGAGGAAGAGGAGGAGGAAGATGATGATGACGACGACGACGAC
GACGAGGAATGGTTGCCGGGTTACGTGTGCGAAGGGGGAGCAGACGGAGG
AGAAAGAGGAGGAGGAGGAGGAGGCCGGAGGGCGGTTTGAGCAGGGAGAG
CGGTCGTTCATCGTCATCAGTGACACGGAGGAAGAGGAGGAGGAAGATGA
TGATGACGACGACGACGACGACGAGGAATGGTTGCCGGACGCCCTGGTCG
CCTCCAAGAAGCGCTCCTCCTCGAACAACGCCCTGGTCGCCTCCAAGAAG
CGCTCCTCCTCGAACAGAGGGGTAAAGGGTAGATACGACGACCCCGGGCC
GGCCGGTGGCGGCAGCAGCAGCACGGGGAGAGGAGGCCGCACCTCTGGAG
ATGGAGGCGGCAAGAGCGATCGATCCTCGTCTGGGTCGGTCGCGTCGGTT
TCCTCCGGGAAGTCCATGTGCTCGGTCTACAGCGACGGCGAGGAGGGAGG
GTGGACCGGGATCGAATGGGACAACTTGAACGCTTACACGGAGGGGTAAA
GGGTAGATACGACGACCCCGGGCCGGCCGGTGGCGGCAGCAGCAGCACGG
GGAGAGGAGGCCGCACCTCTGGAGATGGAGGCGGCAAGAGCGATCGATCC
TCGTCTGGGTCGGTCGCGTCGGTTTCCTCCGGGAAGTCCATGTGCTCGGT
CTACAGCGACGGCGAGGAGGGAGGGTGGACCGGGATCGAATGGGACAACT
TGAACGCTTACACGGTCGCTCAGCTCAAGGAATTCCTCCGGCGCCGCCTT
CTCCCCGTCTCGGGCAAGAAGGAGATCCTCGTCAACCGTCTGCTCCAGGC
CGCTCGCGACGTCGGTCACCTCCCGCAGGTACCTCTTTCGCCTGCTCCGA
CGTCTCCCTCCGGCTCGGACTTGTCTTTCTCTCTTCGCGGCCGAGGAACC
CCCGCCGCCACCGCAGCCGCTTCTGTCGACGGCCACGGCAGCCGCACTGA
AGAAGCAAAGGCCGTCGCTCAGCTCAAGGAATTCCTCCGGCGCCGCCTTC
TCCCCGTCTCGGGCAAGAAGGAGATCCTCGTCAACCGTCTGCTCCAGGCC
GCTCGCGACGTCGGTCACCTCCCGCAGGTACCTCTTTCGCCTGCTCCGAC
GTCTCCCTCCGGCTCGGACTTGTCTTTCTCTCTTCGCGGCCGAGGAACCC
CCGCCGCCACCGCAGCCGCTTCTGTCGACGGCCACGGCAGCCGCACTGAA
GAAGCAAAGGCC
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