mRNA_S-firma_F_contig10757.1019.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10757.1019.1
Unique NamemRNA_S-firma_F_contig10757.1019.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10757.1019.1 vs. uniprot
Match: A0A6H5JUA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA3_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 8.290e-77
Identity = 149/260 (57.31%), Postives = 196/260 (75.38%), Query Frame = 1 
Query:    1 RLRYQALRLCGTSLSPDEKAELKKLCKRCGGSVARRWEPAGRCTHLVSPA-VATVTEKLVLAVAEGRPTVHLGWLRDLAAAGAAKPLRVVPDAAPFVSVVKRGR--GLFPVKNVAERRTHLSGEFLVALYKEEVVEKMVETTGGSLCRAYAMSDDDFAGQNWQDWAAGRKSHFVQKPVEGPPLITPEQRAMVDARGATLEQLGIEATNKQQLAEAVLFLQPLLSVAEAAMQANTSSSSAVVMGASASEAWGPSQS-AASQ 768
            R+R+QALR C T L+ +EKAELK L KRCGG+V+R+W+ A +CTHLV+ A  ++VTEKLVLA+   RP VH+GWL+DL A G AKPLR VP+ A F  VV R R  G F V++ A+RRTHLSG+F   L+K+E+VE +VE  GG+LCRAYAMSDDDFAGQ+WQ W+AGR+SHFV  P      ++ + +A++ +RG  LE +G+ AT+K QL EAV++LQ L++V EA M+A++SS + + M  S SEAWGPSQS AASQ
Sbjct:   88 RVRFQALRFCATQLTAEEKAELKALSKRCGGAVSRKWD-AAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLVAGGTAKPLRPVPETAAFGPVVTRSRRQGPFRVRHTADRRTHLSGDFFAILHKDELVETIVEAAGGALCRAYAMSDDDFAGQDWQKWSAGRQSHFV--PAGPEVSLSAKAKAVLASRGEVLEDVGMAATDKTQLTEAVVYLQSLVNVREA-MRASSSSIAPMAMNTS-SEAWGPSQSLAASQ 342
[Close]
BLAST of mRNA_S-firma_F_contig10757.1019.1 vs. uniprot
Match: D8LKB3_ECTSI (Nibrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB3_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 1.540e-76
Identity = 149/261 (57.09%), Postives = 200/261 (76.63%), Query Frame = 1 
Query:    1 RLRYQALRLCGTSLSPDEKAELKKLCKRCGGSVARRWEPAGRCTHLVSPA-VATVTEKLVLAVAEGRPTVHLGWLRDLAAAGAAKPLRVVPDAAPFVSVVKRGR--GLFPVKNVAERRTHLSGEFLVALYKEEVVEKMVETTGGSLCRAYAMSDDDFAGQNWQDWAAGRKSHFVQKPVEGPPL-ITPEQRAMVDARGATLEQLGIEATNKQQLAEAVLFLQPLLSVAEAAMQANTSSSSAVVMGASASEAWGPSQS-AASQ 768
            R+R+QALR C T L+ +EKAELK L K+CGG+V+R+W+ A +CTHLV+ A  ++VTEKLVLA+   RP VH+GWL+DLAA G AKPLR VP+   F  VV R R  G F V++ A+RRTHLSG+F   L+K+E+VE +VE  GG+LCRAYAMSDDDFAGQ+WQ+W+AGR+SHFVQ    GP + ++ + + ++ +RG  LE +G+EAT+K QL EAV++LQ L++V EA M+A++SS + + +  S SEAWGPSQS AASQ
Sbjct:   88 RVRFQALRFCATQLTAEEKAELKALSKKCGGAVSRKWD-AAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLAAGGTAKPLRPVPETEAFGPVVTRSRRQGPFRVRHTADRRTHLSGDFFAILHKDELVETIVEAAGGALCRAYAMSDDDFAGQDWQEWSAGRQSHFVQA---GPEVSLSAKAKGVLASRGEVLEDVGMEATDKTQLTEAVVYLQSLVNVREA-MRASSSSIAPMAVNTS-SEAWGPSQSLAASQ 342
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10757.1019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUA3_9PHAE8.290e-7757.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKB3_ECTSI1.540e-7657.09Nibrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10757contigS-firma_F_contig10757:137..4512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog4096.XP_009781615.1
PFAMsBRCT,BRCT_2,PTCB-BRCT,zf-C3HC4,zf-C3HC4_2,zf-C3HC4_3,zf-HC5HC2H,zf-RING_UBOX
Max annot lvl35493|Streptophyta
KEGG koko:K04730,ko:K10683
KEGG Pathwayko03440,ko04010,ko04064,ko04620,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05169,map03440,map04010,map04064,map04620,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05169
KEGG ModuleM00686
GOsGO:0000151,GO:0000152,GO:0000724,GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008213,GO:0009314,GO:0009628,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009934,GO:0009987,GO:0010015,GO:0010073,GO:0010074,GO:0010078,GO:0010212,GO:0010332,GO:0010468,GO:0010492,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010565,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0016020,GO:0016043,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019827,GO:0022603,GO:0022607,GO:0022622,GO:0031056,GO:0031057,GO:0031058,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0031436,GO:0032259,GO:0032268,GO:0032269,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034622,GO:0034641,GO:0034968,GO:0035065,GO:0035066,GO:0035067,GO:0036211,GO:0042127,GO:0042304,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045717,GO:0045787,GO:0045833,GO:0045892,GO:0045893,GO:0045922,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046890,GO:0048364,GO:0048366,GO:0048367,GO:0048507,GO:0048509,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051055,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051716,GO:0051726,GO:0060255,GO:0062012,GO:0062014,GO:0065003,GO:0065004,GO:0065007,GO:0070531,GO:0070647,GO:0071156,GO:0071158,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071824,GO:0071840,GO:0071944,GO:0080090,GO:0080182,GO:0090068,GO:0090304,GO:0097159,GO:0098727,GO:0099402,GO:0104004,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901983,GO:1901984,GO:1901985,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1905269,GO:1905392,GO:1990234,GO:2000112,GO:2000113,GO:2000756,GO:2000757,GO:2000758,GO:2001141,GO:2001251,GO:2001252
Evalue4.39e-05
EggNOG OGsKOG4362@1|root,KOG4362@2759|Eukaryota,37RBX@33090|Viridiplantae,3GF1N@35493|Streptophyta,44CNX@71274|asterids
EC2.7.11.1
DescriptionBRCT domain, a BRCA1 C-terminus domain
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSMAD/FHA domain
Ec32 orthologEc-01_009620.1
Exons7
Model size1788
Cds size1788
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.418176-CDS-S-firma_F_contig10757:136..4801622815617.418176-CDS-S-firma_F_contig10757:136..480Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 137..480 +
1696949456.895076-CDS-S-firma_F_contig10757:136..4801696949456.895076-CDS-S-firma_F_contig10757:136..480Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 137..480 +
1622815617.4296763-CDS-S-firma_F_contig10757:868..9581622815617.4296763-CDS-S-firma_F_contig10757:868..958Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 869..958 +
1696949456.910441-CDS-S-firma_F_contig10757:868..9581696949456.910441-CDS-S-firma_F_contig10757:868..958Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 869..958 +
1622815617.4447057-CDS-S-firma_F_contig10757:1377..14591622815617.4447057-CDS-S-firma_F_contig10757:1377..1459Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 1378..1459 +
1696949456.9259598-CDS-S-firma_F_contig10757:1377..14591696949456.9259598-CDS-S-firma_F_contig10757:1377..1459Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 1378..1459 +
1622815617.457486-CDS-S-firma_F_contig10757:2015..21231622815617.457486-CDS-S-firma_F_contig10757:2015..2123Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 2016..2123 +
1696949456.9365652-CDS-S-firma_F_contig10757:2015..21231696949456.9365652-CDS-S-firma_F_contig10757:2015..2123Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 2016..2123 +
1622815617.4700744-CDS-S-firma_F_contig10757:2608..27521622815617.4700744-CDS-S-firma_F_contig10757:2608..2752Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 2609..2752 +
1696949456.9462416-CDS-S-firma_F_contig10757:2608..27521696949456.9462416-CDS-S-firma_F_contig10757:2608..2752Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 2609..2752 +
1622815617.4814186-CDS-S-firma_F_contig10757:2983..36621622815617.4814186-CDS-S-firma_F_contig10757:2983..3662Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 2984..3662 +
1696949456.955048-CDS-S-firma_F_contig10757:2983..36621696949456.955048-CDS-S-firma_F_contig10757:2983..3662Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 2984..3662 +
1622815617.491109-CDS-S-firma_F_contig10757:4171..45121622815617.491109-CDS-S-firma_F_contig10757:4171..4512Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 4172..4512 +
1696949456.9672847-CDS-S-firma_F_contig10757:4171..45121696949456.9672847-CDS-S-firma_F_contig10757:4171..4512Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 4172..4512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10757.1019.1prot_S-firma_F_contig10757.1019.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10757 137..4512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10757.1019.1

>prot_S-firma_F_contig10757.1019.1 ID=prot_S-firma_F_contig10757.1019.1|Name=mRNA_S-firma_F_contig10757.1019.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=596bp
RLRYQALRLCGTSLSPDEKAELKKLCKRCGGSVARRWEPAGRCTHLVSPA
VATVTEKLVLAVAEGRPTVHLGWLRDLAAAGAAKPLRVVPDAAPFVSVVK
RGRGLFPVKNVAERRTHLSGEFLVALYKEEVVEKMVETTGGSLCRAYAMS
DDDFAGQNWQDWAAGRKSHFVQKPVEGPPLITPEQRAMVDARGATLEQLG
IEATNKQQLAEAVLFLQPLLSVAEAAMQANTSSSSAVVMGASASEAWGPS
QSAASQAPQAPSAVHAHRPAAAVVTDPAMPPPATGGSSIRALPKPTGVDG
GNADAATGAAVSETTDGKSKSKAVRDNMAVDGEDAGGTVTGSGGSGGGRR
AGVPGEQTDTAAAAASKKKAATGRKKRGREEQEGEAGEQGDEKQQPRGVG
ASAAVGVGGKKGTPRSREGAGGAKSDAVVAGSDADAAEEVDGGSAKKADG
NGDDDHEGGRDLGAGGSGSGAGEERPSKRRKDAQPPRQQGGGAQENGGPA
GRREGHQEEKGEAEEEEEEEEEEKASDRKDEEAPRQGRGRELQRTNNGAS
PPAPAQTAAPGGWMTAHNAASSSQKEQRHRGGAGGGGGGGGGGGRG
back to top

mRNA from alignment at S-firma_F_contig10757:137..4512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10757.1019.1 ID=mRNA_S-firma_F_contig10757.1019.1|Name=mRNA_S-firma_F_contig10757.1019.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4376bp|location=Sequence derived from alignment at S-firma_F_contig10757:137..4512+ (Sphaerotrichia firma ET2_F female)
AGGCTGCGCTACCAGGCGCTGCGCCTCTGCGGGACGAGCCTCTCCCCCGA
CGAGAAGGCGGAGCTGAAGAAGCTGTGCAAGAGGTGCGGGGGCTCCGTGG
CGCGAAGGTGGGAGCCCGCAGGCCGGTGCACCCACCTGGTGAGCCCCGCC
GTCGCCACCGTAACGGAGAAGCTCGTGCTGGCGGTGGCGGAGGGCAGGCC
GACGGTCCACCTGGGCTGGCTGAGGGACCTTGCGGCCGCCGGCGCGGCGA
AGCCGCTCAGGGTCGTCCCGGATGCGGCGCCGTTCGTGTCGGTCGTGAAG
AGGGGGCGGGGGCTGTTCCCCGTCAAAAACGTCGCCGAGAGAAGGTACTC
TATGTATAGAAGCTTGGCTGTTGTCCTTCGAACTATTTTGTATTTGTTTG
GATGTTTGAAGTTTTTTGTACATCGGGACGGGAGCGGGGTGTGTGAGGAT
GTATGTACACGCGTAGGTGAGCGTGTGCGTGTTTTTTTAGTGTCGGGGAT
TGGGAAAGGGTTCCCATGCCGTATGCGTCCCCATGCCGTATGCGTGTGCC
ATAGATGCCTCGAGATTAACTCCGGCAATGCGTGACCGATCCTAAGCCCC
CCCCCCCTTCGAGTCCGAGTCCGGGCTTAGTATTGTCGCTCTCCCCTTCC
GCCTCTTCTCCGACTGCGTTGCTTCGTTTTGTTTCACGGTGTGCCTCCGG
TTAACGATGCTGATGATGTGAAACCGAACAAGGACTCACCTGTCGGGTGA
GTTTCTCGTCGCTCTCTACAAGGAGGAGGTCGTGGAGAAGATGGTGGAGA
CCACCGGCGGGAGTCTGTGCAGGTGGGCGCAGACTGCTGTGGTGCTGCAG
GTAGACGCAGACTGCTGTGGCTGCCTGTCTATTGCCTCGCGCGAAAATGG
CGCAAGCGATCGTCCCCTGTGTCGCGGTTTTGGTGGGACGGGTTGTGTTG
CGGGGCTCATTGTTGAAAAACTGGCGAACAATGAAAAGTTAGACTTTGTA
CGGCTATCACGGGCTAGGCTAGGCTGGGCTAGGCTAGGCGAGATACCACC
CTCTGATCCGCCCGTTAAAGGGTCTGTAAACTTACCAACCCCAAGCGGTG
TGATCTCAACGTGTTCCCATCCATACGTTACTTCCAAATACTTCTCTCAG
TGAATGCAGCACTCTCTAGGCCACTTGCACGTTGGGTTAGGTTAATTCGA
TTCTTGATCATTTTTATGCTTGTTTTTATGCAATTCCTCAGGGCCTATGC
AATGAGCGATGACGACTTCGCCGGGCAGAACTGGCAGGACTGGGCAGCCG
GTCGCAAGTCGCACTTCGTCCAGGTAATTAATGAGGGAAAGGCTAGTGGC
CATGCTCACAGGAGCGGCACCGAGAGTTTTTTTCGCGGTGGTGAATATGT
ATAAAACGTATGCATTGGATAGTTGTGGGTGGTATTCGCGTTAGGCACGT
CCGATTGCGCGTGTACGCGTGTGGTGTTTTTAGGTTCCTGTCTGTGTGCC
CCAGAGAAACCGGGAACTATGAAAACACGTCATGATTCATTGCAGAAACA
CCGGTGCTGTTGAATAGTATGTTTCTCTTCAGGTAGCAGCGTGCACCCCG
GACTCAATCTCAGGGTTGCTGTGCCGATTGTGGTCGGTGCGTTAGGTCAG
CGGGCACGCGCTGAGTGTTGGGTATGATGTGATGCCTCCCACCCTGCCCT
GCGGTGCCCTCCCACCCCGGATTCCGTCAGAGTGCTGACAGCGACATAAC
CTGTGCCGGTTTTAACGAATTCGAGATTCGAGCCTGTACACAGCACACCC
CTCACCCCGCCTGCACCCCGTACCCCCTGACTGCCTTGTCGTGTTTTGCG
CTTTCTTGCATGTATTGGTTTTTCTTGAGAAGCCGGTTGAGGGTCCACCT
CTCATCACCCCCGAGCAGAGAGCTATGGTGGACGCGAGAGGCGCCACGCT
GGAGCAGCTAGGAATAGAGGCCACCAACAAACAGCAGGTTCGCGATTTAC
TGCAGGGCAGACGCGAAAGATTGGATGCCCGGCCGGGTGTTTCGTGTTCT
CTTCTCTTATGTCTCGCCCTTCTGTTTTCACTCTCAATTGGTTGGTTGGT
TGGTTGGTCGGCTGGTTGGATTGTTTTCTTCACCTGCGTGTGCCATAGAT
GTTCCCATCCGCGGCGTAGCTCTGTCGGTTGCAAATAAGACGTGGTTGGG
TGTGATCTTCACGTGGGCGGCTGTGCTCCTGGTCGGTTTTTTTTGTCAGG
CTGCTTCGGTTCTGGTTGAGCTAGCTAGCTCCAACGCAGCCTGTCTCAGC
TCACAAGACTGCGATGCTAGCACGGATCAGCATGCCTGCTTACCGTGGTG
CCTGCTGAACACGGTGCTTGGCGTATCATGGTGCCTCTGCCCACCCCCGT
TCCCCTCCACGCTTCCCTCCCCCCACCTCCTCCCCGCCGAAAAAATGGTA
ACCGCGCCGTGTCTCTCGTCAGCTGGCGGAGGCGGTGCTGTTCCTCCAAC
CTCTCCTCAGCGTTGCCGAGGCGGCGATGCAGGCCAACACAAGCAGCAGC
TCAGCGGTGGTGATGGGGGCGAGTGCGAGTGAGGCGTGGGGGCCCTCTCA
GTCTGCTGCTTCTCAGGTACCGCTGTGCGTGAGGTGACTGAGGGGTTCCT
TGGTCTGATCAATCGATCTGCCGAGGACGCGTGTCGCGTCACAATTCTGC
CCCGACAAAACACACTGGTGTATCGCGTGTGCGCTTGTTCATGCGCGCAT
GTATCGGCGGAACACGGTGCCCCCCTCTCATCGTCCCCCTGCCGGCACAA
TCGCTGCTGCTTAGCCCTTTTGCTCTCCTCTTGGTGTCCCACCGCAGGCT
CCGCAAGCACCATCGGCAGTACATGCCCATCGACCTGCGGCCGCCGTCGT
CACCGACCCCGCTATGCCCCCGCCTGCCACCGGCGGCAGCAGCATCCGCG
CTCTCCCAAAGCCAACGGGGGTTGATGGTGGTAATGCTGATGCTGCCACT
GGCGCCGCGGTGTCTGAGACGACCGACGGCAAGAGCAAGAGCAAGGCTGT
CCGTGACAACATGGCAGTCGACGGGGAGGATGCCGGTGGTACGGTGACCG
GCAGCGGCGGCAGTGGCGGTGGTAGAAGGGCCGGAGTACCGGGAGAACAA
ACCGACACCGCCGCCGCCGCCGCAAGCAAGAAGAAAGCGGCTACCGGTAG
AAAGAAGCGCGGCCGCGAAGAGCAGGAAGGAGAGGCAGGGGAACAGGGGG
ACGAGAAACAGCAGCCTCGAGGGGTCGGTGCCTCTGCTGCTGTTGGCGTC
GGGGGCAAGAAAGGCACCCCGCGGAGCCGCGAGGGAGCAGGGGGCGCGAA
GAGTGACGCCGTGGTGGCCGGGTCTGACGCCGATGCCGCCGAGGAGGTGG
ACGGGGGTTCAGCAAAGAAGGCCGACGGCAACGGTGATGATGACCATGAG
GGTGGTCGTGATCTGGGAGCAGGTGGAAGCGGGAGCGGCGCAGGGGAGGA
GCGACCGTCCAAGCGGCGGAAAGATGGTGAGTTTTTTTTTCGTGTGGCGT
GTGTTGAAGCGGGCGGGGGCGGGGCGGAACGAGCTCCAAAATATGTTGTA
GGTCCTTGTTCTGACAATGGAAGGGTAAGGGTGGGCGTGTTGCAAGAAAA
GCCTGACGATGATGGTCGGTGGGTAGTCAGTCTCGCGGTTTTGCGACCCC
GCCAAGTGCGTGTCGTTTTGCGCCATTTCAGAAACGGCGGGCGCGAGGTT
GGACCTGCATTTTGTTTCTGGTTGATTTTTGGCCAAGCAAGCCCTGTCCG
CCAACCGTGTCAGGTGCTTTTTCAATTTTGTCAAGTAGTGGGTTTTCAGG
GCCGACTTGTCAGCACTGACTGCTGTTCTTGAAATGTGCAGACACGGCAA
AGCGGCGGGTATCGTGAATCGTAATTCAAATACCATCTCGGGCCACGAAA
GCACCTTCATGTTGAGTCACACACACACACACACACACAACCCGCGTATG
ATGCCGCCCTCTTCATCCCCGCCAAACTAACTAAGCGCAACCGCCGCGGC
AACAAGGAGGAGGTGCACAGGAAAACGGAGGACCGGCAGGGCGAAGAGAA
GGACACCAAGAAGAGAAAGGGGAAGCAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAGAAGGCGTCGGACAGAAAAGACGAAGAAGCGCCGAGGCAGGGGC
GGGGTAGGGAACTCCAACGCACAAACAACGGCGCCTCCCCCCCCGCCCCG
GCCCAAACCGCGGCCCCCGGTGGCTGGATGACCGCGCACAACGCCGCCTC
TTCTTCCCAGAAAGAACAGCGACACAGAGGAGGAGCGGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAAGAGGA
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10757:137..4512+

>mRNA_S-firma_F_contig10757.1019.1 ID=mRNA_S-firma_F_contig10757.1019.1|Name=mRNA_S-firma_F_contig10757.1019.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3576bp|location=Sequence derived from alignment at S-firma_F_contig10757:137..4512+ (Sphaerotrichia firma ET2_F female)
AGGCTGCGCTACCAGGCGCTGCGCCTCTGCGGGACGAGCCTCTCCCCCGA
CGAGAAGGCGGAGCTGAAGAAGCTGTGCAAGAGGTGCGGGGGCTCCGTGG
CGCGAAGGTGGGAGCCCGCAGGCCGGTGCACCCACCTGGTGAGCCCCGCC
GTCGCCACCGTAACGGAGAAGCTCGTGCTGGCGGTGGCGGAGGGCAGGCC
GACGGTCCACCTGGGCTGGCTGAGGGACCTTGCGGCCGCCGGCGCGGCGA
AGCCGCTCAGGGTCGTCCCGGATGCGGCGCCGTTCGTGTCGGTCGTGAAG
AGGGGGCGGGGGCTGTTCCCCGTCAAAAACGTCGCCGAGAGAAGAGGCTG
CGCTACCAGGCGCTGCGCCTCTGCGGGACGAGCCTCTCCCCCGACGAGAA
GGCGGAGCTGAAGAAGCTGTGCAAGAGGTGCGGGGGCTCCGTGGCGCGAA
GGTGGGAGCCCGCAGGCCGGTGCACCCACCTGGTGAGCCCCGCCGTCGCC
ACCGTAACGGAGAAGCTCGTGCTGGCGGTGGCGGAGGGCAGGCCGACGGT
CCACCTGGGCTGGCTGAGGGACCTTGCGGCCGCCGGCGCGGCGAAGCCGC
TCAGGGTCGTCCCGGATGCGGCGCCGTTCGTGTCGGTCGTGAAGAGGGGG
CGGGGGCTGTTCCCCGTCAAAAACGTCGCCGAGAGAAGGACTCACCTGTC
GGGTGAGTTTCTCGTCGCTCTCTACAAGGAGGAGGTCGTGGAGAAGATGG
TGGAGACCACCGGCGGGAGTCTGTGCAGGACTCACCTGTCGGGTGAGTTT
CTCGTCGCTCTCTACAAGGAGGAGGTCGTGGAGAAGATGGTGGAGACCAC
CGGCGGGAGTCTGTGCAGGGCCTATGCAATGAGCGATGACGACTTCGCCG
GGCAGAACTGGCAGGACTGGGCAGCCGGTCGCAAGTCGCACTTCGTCCAG
GGCCTATGCAATGAGCGATGACGACTTCGCCGGGCAGAACTGGCAGGACT
GGGCAGCCGGTCGCAAGTCGCACTTCGTCCAGAAGCCGGTTGAGGGTCCA
CCTCTCATCACCCCCGAGCAGAGAGCTATGGTGGACGCGAGAGGCGCCAC
GCTGGAGCAGCTAGGAATAGAGGCCACCAACAAACAGCAGAAGCCGGTTG
AGGGTCCACCTCTCATCACCCCCGAGCAGAGAGCTATGGTGGACGCGAGA
GGCGCCACGCTGGAGCAGCTAGGAATAGAGGCCACCAACAAACAGCAGCT
GGCGGAGGCGGTGCTGTTCCTCCAACCTCTCCTCAGCGTTGCCGAGGCGG
CGATGCAGGCCAACACAAGCAGCAGCTCAGCGGTGGTGATGGGGGCGAGT
GCGAGTGAGGCGTGGGGGCCCTCTCAGTCTGCTGCTTCTCAGCTGGCGGA
GGCGGTGCTGTTCCTCCAACCTCTCCTCAGCGTTGCCGAGGCGGCGATGC
AGGCCAACACAAGCAGCAGCTCAGCGGTGGTGATGGGGGCGAGTGCGAGT
GAGGCGTGGGGGCCCTCTCAGTCTGCTGCTTCTCAGGCTCCGCAAGCACC
ATCGGCAGTACATGCCCATCGACCTGCGGCCGCCGTCGTCACCGACCCCG
CTATGCCCCCGCCTGCCACCGGCGGCAGCAGCATCCGCGCTCTCCCAAAG
CCAACGGGGGTTGATGGTGGTAATGCTGATGCTGCCACTGGCGCCGCGGT
GTCTGAGACGACCGACGGCAAGAGCAAGAGCAAGGCTGTCCGTGACAACA
TGGCAGTCGACGGGGAGGATGCCGGTGGTACGGTGACCGGCAGCGGCGGC
AGTGGCGGTGGTAGAAGGGCCGGAGTACCGGGAGAACAAACCGACACCGC
CGCCGCCGCCGCAAGCAAGAAGAAAGCGGCTACCGGTAGAAAGAAGCGCG
GCCGCGAAGAGCAGGAAGGAGAGGCAGGGGAACAGGGGGACGAGAAACAG
CAGCCTCGAGGGGTCGGTGCCTCTGCTGCTGTTGGCGTCGGGGGCAAGAA
AGGCACCCCGCGGAGCCGCGAGGGAGCAGGGGGCGCGAAGAGTGACGCCG
TGGTGGCCGGGTCTGACGCCGATGCCGCCGAGGAGGTGGACGGGGGTTCA
GCAAAGAAGGCCGACGGCAACGGTGATGATGACCATGAGGGTGGTCGTGA
TCTGGGAGCAGGTGGAAGCGGGAGCGGCGCAGGGGAGGAGCGACCGTCCA
AGCGGCGGAAAGATGGCTCCGCAAGCACCATCGGCAGTACATGCCCATCG
ACCTGCGGCCGCCGTCGTCACCGACCCCGCTATGCCCCCGCCTGCCACCG
GCGGCAGCAGCATCCGCGCTCTCCCAAAGCCAACGGGGGTTGATGGTGGT
AATGCTGATGCTGCCACTGGCGCCGCGGTGTCTGAGACGACCGACGGCAA
GAGCAAGAGCAAGGCTGTCCGTGACAACATGGCAGTCGACGGGGAGGATG
CCGGTGGTACGGTGACCGGCAGCGGCGGCAGTGGCGGTGGTAGAAGGGCC
GGAGTACCGGGAGAACAAACCGACACCGCCGCCGCCGCCGCAAGCAAGAA
GAAAGCGGCTACCGGTAGAAAGAAGCGCGGCCGCGAAGAGCAGGAAGGAG
AGGCAGGGGAACAGGGGGACGAGAAACAGCAGCCTCGAGGGGTCGGTGCC
TCTGCTGCTGTTGGCGTCGGGGGCAAGAAAGGCACCCCGCGGAGCCGCGA
GGGAGCAGGGGGCGCGAAGAGTGACGCCGTGGTGGCCGGGTCTGACGCCG
ATGCCGCCGAGGAGGTGGACGGGGGTTCAGCAAAGAAGGCCGACGGCAAC
GGTGATGATGACCATGAGGGTGGTCGTGATCTGGGAGCAGGTGGAAGCGG
GAGCGGCGCAGGGGAGGAGCGACCGTCCAAGCGGCGGAAAGATGCGCAAC
CGCCGCGGCAACAAGGAGGAGGTGCACAGGAAAACGGAGGACCGGCAGGG
CGAAGAGAAGGACACCAAGAAGAGAAAGGGGAAGCAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAGAAGGCGTCGGACAGAAAAGACGAAGAAGCGCCGA
GGCAGGGGCGGGGTAGGGAACTCCAACGCACAAACAACGGCGCCTCCCCC
CCCGCCCCGGCCCAAACCGCGGCCCCCGGTGGCTGGATGACCGCGCACAA
CGCCGCCTCTTCTTCCCAGAAAGAACAGCGACACAGAGGAGGAGCGGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGACGCAACCGCCGCGGC
AACAAGGAGGAGGTGCACAGGAAAACGGAGGACCGGCAGGGCGAAGAGAA
GGACACCAAGAAGAGAAAGGGGAAGCAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAGAAGGCGTCGGACAGAAAAGACGAAGAAGCGCCGAGGCAGGGGC
GGGGTAGGGAACTCCAACGCACAAACAACGGCGCCTCCCCCCCCGCCCCG
GCCCAAACCGCGGCCCCCGGTGGCTGGATGACCGCGCACAACGCCGCCTC
TTCTTCCCAGAAAGAACAGCGACACAGAGGAGGAGCGGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAAGAGGA
back to top