prot_S-firma_F_contig10757.1019.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10757.1019.1
Unique Nameprot_S-firma_F_contig10757.1019.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length596
Homology
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BLAST of mRNA_S-firma_F_contig10757.1019.1 vs. uniprot
Match: A0A6H5JUA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA3_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 8.290e-77
Identity = 149/260 (57.31%), Postives = 196/260 (75.38%), Query Frame = 0 
Query:    1 RLRYQALRLCGTSLSPDEKAELKKLCKRCGGSVARRWEPAGRCTHLVSPA-VATVTEKLVLAVAEGRPTVHLGWLRDLAAAGAAKPLRVVPDAAPFVSVVKRGR--GLFPVKNVAERRTHLSGEFLVALYKEEVVEKMVETTGGSLCRAYAMSDDDFAGQNWQDWAAGRKSHFVQKPVEGPPLITPEQRAMVDARGATLEQLGIEATNKQQLAEAVLFLQPLLSVAEAAMQANTSSSSAVVMGASASEAWGPSQS-AASQ 256
            R+R+QALR C T L+ +EKAELK L KRCGG+V+R+W+ A +CTHLV+ A  ++VTEKLVLA+   RP VH+GWL+DL A G AKPLR VP+ A F  VV R R  G F V++ A+RRTHLSG+F   L+K+E+VE +VE  GG+LCRAYAMSDDDFAGQ+WQ W+AGR+SHFV  P      ++ + +A++ +RG  LE +G+ AT+K QL EAV++LQ L++V EA M+A++SS + + M  S SEAWGPSQS AASQ
Sbjct:   88 RVRFQALRFCATQLTAEEKAELKALSKRCGGAVSRKWD-AAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLVAGGTAKPLRPVPETAAFGPVVTRSRRQGPFRVRHTADRRTHLSGDFFAILHKDELVETIVEAAGGALCRAYAMSDDDFAGQDWQKWSAGRQSHFV--PAGPEVSLSAKAKAVLASRGEVLEDVGMAATDKTQLTEAVVYLQSLVNVREA-MRASSSSIAPMAMNTS-SEAWGPSQSLAASQ 342
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BLAST of mRNA_S-firma_F_contig10757.1019.1 vs. uniprot
Match: D8LKB3_ECTSI (Nibrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB3_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 1.540e-76
Identity = 149/261 (57.09%), Postives = 200/261 (76.63%), Query Frame = 0 
Query:    1 RLRYQALRLCGTSLSPDEKAELKKLCKRCGGSVARRWEPAGRCTHLVSPA-VATVTEKLVLAVAEGRPTVHLGWLRDLAAAGAAKPLRVVPDAAPFVSVVKRGR--GLFPVKNVAERRTHLSGEFLVALYKEEVVEKMVETTGGSLCRAYAMSDDDFAGQNWQDWAAGRKSHFVQKPVEGPPL-ITPEQRAMVDARGATLEQLGIEATNKQQLAEAVLFLQPLLSVAEAAMQANTSSSSAVVMGASASEAWGPSQS-AASQ 256
            R+R+QALR C T L+ +EKAELK L K+CGG+V+R+W+ A +CTHLV+ A  ++VTEKLVLA+   RP VH+GWL+DLAA G AKPLR VP+   F  VV R R  G F V++ A+RRTHLSG+F   L+K+E+VE +VE  GG+LCRAYAMSDDDFAGQ+WQ+W+AGR+SHFVQ    GP + ++ + + ++ +RG  LE +G+EAT+K QL EAV++LQ L++V EA M+A++SS + + +  S SEAWGPSQS AASQ
Sbjct:   88 RVRFQALRFCATQLTAEEKAELKALSKKCGGAVSRKWD-AAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLAAGGTAKPLRPVPETEAFGPVVTRSRRQGPFRVRHTADRRTHLSGDFFAILHKDELVETIVEAAGGALCRAYAMSDDDFAGQDWQEWSAGRQSHFVQA---GPEVSLSAKAKGVLASRGEVLEDVGMEATDKTQLTEAVVYLQSLVNVREA-MRASSSSIAPMAVNTS-SEAWGPSQSLAASQ 342
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10757.1019.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUA3_9PHAE8.290e-7757.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKB3_ECTSI1.540e-7657.09Nibrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 503..532
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 1..81
e-value: 0.0083
score: 25.3
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 1..76
score: 10.196
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190coord: 4..85
e-value: 1.1E-13
score: 53.1
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 8..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10757contigS-firma_F_contig10757:137..4512 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10757.1019.1mRNA_S-firma_F_contig10757.1019.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10757 137..4512 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10757.1019.1 ID=prot_S-firma_F_contig10757.1019.1|Name=mRNA_S-firma_F_contig10757.1019.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=596bp
RLRYQALRLCGTSLSPDEKAELKKLCKRCGGSVARRWEPAGRCTHLVSPA
VATVTEKLVLAVAEGRPTVHLGWLRDLAAAGAAKPLRVVPDAAPFVSVVK
RGRGLFPVKNVAERRTHLSGEFLVALYKEEVVEKMVETTGGSLCRAYAMS
DDDFAGQNWQDWAAGRKSHFVQKPVEGPPLITPEQRAMVDARGATLEQLG
IEATNKQQLAEAVLFLQPLLSVAEAAMQANTSSSSAVVMGASASEAWGPS
QSAASQAPQAPSAVHAHRPAAAVVTDPAMPPPATGGSSIRALPKPTGVDG
GNADAATGAAVSETTDGKSKSKAVRDNMAVDGEDAGGTVTGSGGSGGGRR
AGVPGEQTDTAAAAASKKKAATGRKKRGREEQEGEAGEQGDEKQQPRGVG
ASAAVGVGGKKGTPRSREGAGGAKSDAVVAGSDADAAEEVDGGSAKKADG
NGDDDHEGGRDLGAGGSGSGAGEERPSKRRKDAQPPRQQGGGAQENGGPA
GRREGHQEEKGEAEEEEEEEEEEKASDRKDEEAPRQGRGRELQRTNNGAS
PPAPAQTAAPGGWMTAHNAASSSQKEQRHRGGAGGGGGGGGGGGRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036420BRCT_dom_sf
IPR001357BRCT_dom