mRNA_S-firma_F_contig10721.979.1 (mRNA) Sphaerotrichia firma ET2_F female
|
Overview
Homology
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: UPI000C1CE173 (pre-rRNA-processing protein TSR1 homolog n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CE173) HSP 1 Score: 114 bits (286), Expect = 4.610e-32 Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYRPL 207
MFH PED+RWFK IE+WTK G G IK+PVGTHG MKC F+G ++QHDTVC+SL+KR YPKW + PL
Sbjct: 1 MFHNPEDVRWFKPIEVWTKCGRRGRIKEPVGTHGAMKCIFNGVLQQHDTVCMSLYKRTYPKWPQYWFPL 69
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A813BGX2_9DINO (Tsr1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BGX2_9DINO) HSP 1 Score: 120 bits (300), Expect = 1.940e-30 Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1
Query: 1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYRPL 207
MFH PEDIR+FK +ELWTK+G G I++PVGTHG MKC FSG++ HDTVC+SL+KRVYP+WG SYR L
Sbjct: 87 MFHNPEDIRYFKPVELWTKHGLAGRIREPVGTHGSMKCHFSGSVYSHDTVCMSLFKRVYPRWGASYRHL 155
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A0A9K8S9_ARUDO (DUF663 domain-containing protein n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9K8S9_ARUDO) HSP 1 Score: 112 bits (279), Expect = 4.040e-30 Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 1
Query: 1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKW 186
MFH P+DIRWFK +ELWTK+G G IK+ VGTHG MKC F+ +I+QHDTVC+SL+KRVYPKW
Sbjct: 77 MFHNPDDIRWFKPVELWTKHGRHGRIKETVGTHGAMKCIFNSSIQQHDTVCMSLYKRVYPKW 138
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A2P2M9D1_RHIMU (DUF663 domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2M9D1_RHIMU) HSP 1 Score: 111 bits (278), Expect = 4.700e-30 Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 1
Query: 1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYR 201
MFH PED+RWFK +E+WTK G G +K+PVGTHG MKC F+G ++QHDTVC+SL+KR YPKW P +R
Sbjct: 67 MFHNPEDVRWFKPVEVWTKCGRRGRVKEPVGTHGAMKCIFNGVLQQHDTVCMSLYKRSYPKW-PEHR 132
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: UPI0011D2A811 (pre-rRNA-processing protein TSR1 homolog n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2A811) HSP 1 Score: 109 bits (273), Expect = 4.470e-29 Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 1
Query: 1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYR 201
MFH PED+RWFK +E+WTK G G IK+PVGTHG MKC +G ++QHDTVC+SL+KR YPKW P +R
Sbjct: 85 MFHNPEDVRWFKPVEVWTKCGCRGRIKEPVGTHGAMKCVLNGVLQQHDTVCMSLYKRAYPKW-PEHR 150
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: L8H0X3_ACACA (Bms1-type G domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H0X3_ACACA) HSP 1 Score: 117 bits (292), Expect = 6.270e-29 Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGP---------SYRP 204
MF+ P+D+RWF +ELWTKYG +GHIK+P+GTHG MKC F G I+ HDTVC++L+KR+YPKWG SYRP
Sbjct: 758 MFYHPDDVRWFSPVELWTKYGRSGHIKEPLGTHGLMKCRFDGKIQNHDTVCMNLYKRIYPKWGTTTLLSEKPSSYRP 834
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A0A9D3H5_ARUDO (DUF663 domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9D3H5_ARUDO) HSP 1 Score: 110 bits (275), Expect = 6.310e-29 Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 1
Query: 1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKW 186
MFH P+D+RWFK +ELWTK+G G IK+ VGTHG MKC F+ +I+QHDTVC+SL+KR YPKW
Sbjct: 127 MFHNPDDVRWFKPVELWTKHGRRGRIKETVGTHGAMKCIFNSSIQQHDTVCMSLYKRAYPKW 188
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A835LN62_9MAGN (Bms1-type G domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LN62_9MAGN) HSP 1 Score: 116 bits (291), Expect = 8.450e-29 Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYRPL 207
MFHTPED+RWFK IE+WTK G G +K+PVGTHG MKC F+G ++QHDTVC+SL+KRVYPKW P+
Sbjct: 686 MFHTPEDVRWFKPIEVWTKCGRRGRVKEPVGTHGAMKCIFNGIVQQHDTVCMSLFKRVYPKWPEQRYPM 754
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A7J8NUV3_GOSRA (DUF663 domain-containing protein (Fragment) n=3 Tax=Gossypium TaxID=3633 RepID=A0A7J8NUV3_GOSRA) HSP 1 Score: 112 bits (281), Expect = 1.020e-28 Identity = 43/67 (64.18%), Postives = 55/67 (82.09%), Query Frame = 1
Query: 1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYR 201
MFH PED+RWFK +E+WTK G G +K+P+GTHG MKC F+G ++QHDTVC+SL+KR YPKW P +R
Sbjct: 242 MFHNPEDVRWFKPVEVWTKCGRRGRVKEPIGTHGGMKCIFNGGLQQHDTVCMSLYKRAYPKW-PEHR 307
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: UPI000539EC6C (pre-rRNA-processing protein TSR1 homolog n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000539EC6C) HSP 1 Score: 105 bits (263), Expect = 1.620e-28 Identity = 38/62 (61.29%), Postives = 51/62 (82.26%), Query Frame = 1
Query: 1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKW 186
MFH PED++WFK +E+W+K G G +K+PVGTHG MKC F+G ++QHD VC++L+KR YPKW
Sbjct: 8 MFHNPEDVKWFKPVEVWSKCGRRGRVKEPVGTHGAMKCIFNGVVQQHDIVCMNLYKRAYPKW 69 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10721.979.1 >prot_S-firma_F_contig10721.979.1 ID=prot_S-firma_F_contig10721.979.1|Name=mRNA_S-firma_F_contig10721.979.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=69bp MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVback to top mRNA from alignment at S-firma_F_contig10721:2476..2744- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10721.979.1 ID=mRNA_S-firma_F_contig10721.979.1|Name=mRNA_S-firma_F_contig10721.979.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=269bp|location=Sequence derived from alignment at S-firma_F_contig10721:2476..2744- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10721:2476..2744- >mRNA_S-firma_F_contig10721.979.1 ID=mRNA_S-firma_F_contig10721.979.1|Name=mRNA_S-firma_F_contig10721.979.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=414bp|location=Sequence derived from alignment at S-firma_F_contig10721:2476..2744- (Sphaerotrichia firma ET2_F female)back to top |