prot_S-firma_F_contig10721.979.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10721.979.1
Unique Nameprot_S-firma_F_contig10721.979.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length69
Homology
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: UPI000C1CE173 (pre-rRNA-processing protein TSR1 homolog n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CE173)

HSP 1 Score: 114 bits (286), Expect = 4.610e-32
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 0
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYRPL 69
            MFH PED+RWFK IE+WTK G  G IK+PVGTHG MKC F+G ++QHDTVC+SL+KR YPKW   + PL
Sbjct:    1 MFHNPEDVRWFKPIEVWTKCGRRGRIKEPVGTHGAMKCIFNGVLQQHDTVCMSLYKRTYPKWPQYWFPL 69          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A813BGX2_9DINO (Tsr1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BGX2_9DINO)

HSP 1 Score: 120 bits (300), Expect = 1.940e-30
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 0
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYRPL 69
            MFH PEDIR+FK +ELWTK+G  G I++PVGTHG MKC FSG++  HDTVC+SL+KRVYP+WG SYR L
Sbjct:   87 MFHNPEDIRYFKPVELWTKHGLAGRIREPVGTHGSMKCHFSGSVYSHDTVCMSLFKRVYPRWGASYRHL 155          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A0A9K8S9_ARUDO (DUF663 domain-containing protein n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9K8S9_ARUDO)

HSP 1 Score: 112 bits (279), Expect = 4.040e-30
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 0
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKW 62
            MFH P+DIRWFK +ELWTK+G  G IK+ VGTHG MKC F+ +I+QHDTVC+SL+KRVYPKW
Sbjct:   77 MFHNPDDIRWFKPVELWTKHGRHGRIKETVGTHGAMKCIFNSSIQQHDTVCMSLYKRVYPKW 138          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A2P2M9D1_RHIMU (DUF663 domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2M9D1_RHIMU)

HSP 1 Score: 111 bits (278), Expect = 4.700e-30
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 0
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYR 67
            MFH PED+RWFK +E+WTK G  G +K+PVGTHG MKC F+G ++QHDTVC+SL+KR YPKW P +R
Sbjct:   67 MFHNPEDVRWFKPVEVWTKCGRRGRVKEPVGTHGAMKCIFNGVLQQHDTVCMSLYKRSYPKW-PEHR 132          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: UPI0011D2A811 (pre-rRNA-processing protein TSR1 homolog n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2A811)

HSP 1 Score: 109 bits (273), Expect = 4.470e-29
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 0
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYR 67
            MFH PED+RWFK +E+WTK G  G IK+PVGTHG MKC  +G ++QHDTVC+SL+KR YPKW P +R
Sbjct:   85 MFHNPEDVRWFKPVEVWTKCGCRGRIKEPVGTHGAMKCVLNGVLQQHDTVCMSLYKRAYPKW-PEHR 150          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: L8H0X3_ACACA (Bms1-type G domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H0X3_ACACA)

HSP 1 Score: 117 bits (292), Expect = 6.270e-29
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 0
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGP---------SYRP 68
            MF+ P+D+RWF  +ELWTKYG +GHIK+P+GTHG MKC F G I+ HDTVC++L+KR+YPKWG          SYRP
Sbjct:  758 MFYHPDDVRWFSPVELWTKYGRSGHIKEPLGTHGLMKCRFDGKIQNHDTVCMNLYKRIYPKWGTTTLLSEKPSSYRP 834          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A0A9D3H5_ARUDO (DUF663 domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9D3H5_ARUDO)

HSP 1 Score: 110 bits (275), Expect = 6.310e-29
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 0
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKW 62
            MFH P+D+RWFK +ELWTK+G  G IK+ VGTHG MKC F+ +I+QHDTVC+SL+KR YPKW
Sbjct:  127 MFHNPDDVRWFKPVELWTKHGRRGRIKETVGTHGAMKCIFNSSIQQHDTVCMSLYKRAYPKW 188          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A835LN62_9MAGN (Bms1-type G domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LN62_9MAGN)

HSP 1 Score: 116 bits (291), Expect = 8.450e-29
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 0
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYRPL 69
            MFHTPED+RWFK IE+WTK G  G +K+PVGTHG MKC F+G ++QHDTVC+SL+KRVYPKW     P+
Sbjct:  686 MFHTPEDVRWFKPIEVWTKCGRRGRVKEPVGTHGAMKCIFNGIVQQHDTVCMSLFKRVYPKWPEQRYPM 754          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A7J8NUV3_GOSRA (DUF663 domain-containing protein (Fragment) n=3 Tax=Gossypium TaxID=3633 RepID=A0A7J8NUV3_GOSRA)

HSP 1 Score: 112 bits (281), Expect = 1.020e-28
Identity = 43/67 (64.18%), Postives = 55/67 (82.09%), Query Frame = 0
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYR 67
            MFH PED+RWFK +E+WTK G  G +K+P+GTHG MKC F+G ++QHDTVC+SL+KR YPKW P +R
Sbjct:  242 MFHNPEDVRWFKPVEVWTKCGRRGRVKEPIGTHGGMKCIFNGGLQQHDTVCMSLYKRAYPKW-PEHR 307          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: UPI000539EC6C (pre-rRNA-processing protein TSR1 homolog n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000539EC6C)

HSP 1 Score: 105 bits (263), Expect = 1.620e-28
Identity = 38/62 (61.29%), Postives = 51/62 (82.26%), Query Frame = 0
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKW 62
            MFH PED++WFK +E+W+K G  G +K+PVGTHG MKC F+G ++QHD VC++L+KR YPKW
Sbjct:    8 MFHNPEDVKWFKPVEVWSKCGRRGRVKEPVGTHGAMKCIFNGVVQQHDIVCMNLYKRAYPKW 69          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C1CE1734.610e-3266.67pre-rRNA-processing protein TSR1 homolog n=1 Tax=O... [more]
A0A813BGX2_9DINO1.940e-3069.57Tsr1 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A0A9K8S9_ARUDO4.040e-3070.97DUF663 domain-containing protein n=2 Tax=Arundo do... [more]
A0A2P2M9D1_RHIMU4.700e-3065.67DUF663 domain-containing protein n=1 Tax=Rhizophor... [more]
UPI0011D2A8114.470e-2965.67pre-rRNA-processing protein TSR1 homolog n=1 Tax=S... [more]
L8H0X3_ACACA6.270e-2959.74Bms1-type G domain-containing protein n=1 Tax=Acan... [more]
A0A0A9D3H5_ARUDO6.310e-2967.74DUF663 domain-containing protein n=1 Tax=Arundo do... [more]
A0A835LN62_9MAGN8.450e-2966.67Bms1-type G domain-containing protein n=1 Tax=Copt... [more]
A0A7J8NUV3_GOSRA1.020e-2864.18DUF663 domain-containing protein (Fragment) n=3 Ta... [more]
UPI000539EC6C1.620e-2861.29pre-rRNA-processing protein TSR1 homolog n=1 Tax=C... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalPFAMPF04950RIBIOP_Ccoord: 1..60
e-value: 2.2E-30
score: 106.1
IPR039761Ribosome biogenesis protein Bms1/Tsr1PANTHERPTHR12858RIBOSOME BIOGENESIS PROTEINcoord: 1..63
NoneNo IPR availablePANTHERPTHR12858:SF1PRE-RRNA-PROCESSING PROTEIN TSR1 HOMOLOGcoord: 1..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10721contigS-firma_F_contig10721:2476..2744 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10721.979.1mRNA_S-firma_F_contig10721.979.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10721 2476..2744 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10721.979.1 ID=prot_S-firma_F_contig10721.979.1|Name=mRNA_S-firma_F_contig10721.979.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=69bp
MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTV
CLSLWKRVYPKWGPSYRPL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039761Bms1/Tsr1
IPR007034BMS1_TSR1_C