mRNA_S-firma_F_contig1070.950.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1070.950.1
Unique NamemRNA_S-firma_F_contig1070.950.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1070.950.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 9.950e-10
Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  148 LYTLKPHPLE---------VFSTFQGKYAEAEPLFERSLAIREKVLGPEHQDVAGGLDKVA 303
            L  + PH L          VF TFQGKY EA PL+ERSLAIREKVLGP+H DVA  L+  A
Sbjct:  774 LSNVPPHSLSSFHSSNTHHVFITFQGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRA 834
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BLAST of mRNA_S-firma_F_contig1070.950.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.540e-9
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  193 QGKYAEAEPLFERSLAIREKVLGPEHQDVAGGLDKVAQF 309
            QGKYAEAEPL+ERSLAI+EKVLGPEH DVA  LD  A  
Sbjct:  693 QGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASL 731
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BLAST of mRNA_S-firma_F_contig1070.950.1 vs. uniprot
Match: A0A6H5KB97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB97_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 6.010e-9
Identity = 34/55 (61.82%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:  160 KPHPLEVFSTFQGKYAEAEPLFERSLAIREKVLGPEHQDVAGGLDKVAQF*GAQV 324
            K H LEV    QGKYAEAEPL+ERS AIRE VLGPEH DV   L+ +A     QV
Sbjct:  337 KAHLLEV----QGKYAEAEPLYERSQAIRENVLGPEHSDVGRSLNNLAALKMRQV 387
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BLAST of mRNA_S-firma_F_contig1070.950.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.990e-8
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:  193 QGKYAEAEPLFERSLAIREKVLGPEHQDVAGGLDKVAQF*GAQV 324
            QGKY EAEPL+ERS AI+EKVLG EH DVA  L+   +   AQV
Sbjct:   18 QGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQV 61
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BLAST of mRNA_S-firma_F_contig1070.950.1 vs. uniprot
Match: A0A351SVW6_9DELT (CHAT domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A351SVW6_9DELT)

HSP 1 Score: 60.1 bits (144), Expect = 2.960e-8
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:  193 QGKYAEAEPLFERSLAIREKVLGPEHQDVA 282
            QGKYAEAEPLF RSLAIREKVLGPEHQ+VA
Sbjct:   15 QGKYAEAEPLFRRSLAIREKVLGPEHQNVA 44
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BLAST of mRNA_S-firma_F_contig1070.950.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.000e-7
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:  193 QGKYAEAEPLFERSLAIREKVLGPEHQDVAGGLD 294
            QGKYAEAEPL+ERS AIREK+LGPEH DVA  L+
Sbjct:  291 QGKYAEAEPLYERSQAIREKMLGPEHPDVAQSLN 324
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BLAST of mRNA_S-firma_F_contig1070.950.1 vs. uniprot
Match: A0A6H5K8Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z8_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.730e-7
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:  193 QGKYAEAEPLFERSLAIREKVLGPEHQDVAGGLD 294
            QGKY +AE L+ERSLAIREKVLGPEH DVA  L+
Sbjct:   16 QGKYDDAEQLYERSLAIREKVLGPEHPDVAQSLN 49
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BLAST of mRNA_S-firma_F_contig1070.950.1 vs. uniprot
Match: A0A533TP31_CHLSQ (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Chlorobium sp. TaxID=1095 RepID=A0A533TP31_CHLSQ)

HSP 1 Score: 57.0 bits (136), Expect = 2.800e-7
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:  196 GKYAEAEPLFERSLAIREKVLGPEHQDVAGGLD 294
            GKYAEAEPLF RSL IREK LGP+H DVA GL+
Sbjct:  230 GKYAEAEPLFRRSLEIREKALGPDHPDVATGLN 262
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BLAST of mRNA_S-firma_F_contig1070.950.1 vs. uniprot
Match: A0A1F4GZ05_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4GZ05_9PROT)

HSP 1 Score: 56.2 bits (134), Expect = 4.840e-7
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:  193 QGKYAEAEPLFERSLAIREKVLGPEHQDVAGGLDKVA 303
            QG+YA+AEP++ RSLAI EKVLGPEH DVA  L+ +A
Sbjct:   77 QGRYADAEPMYRRSLAIYEKVLGPEHLDVADSLNNLA 113
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BLAST of mRNA_S-firma_F_contig1070.950.1 vs. uniprot
Match: A0A0J9EWN6_9CYAN (Kinesin (Fragment) n=1 Tax=Limnoraphis robusta CS-951 TaxID=1637645 RepID=A0A0J9EWN6_9CYAN)

HSP 1 Score: 56.2 bits (134), Expect = 5.470e-7
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:  193 QGKYAEAEPLFERSLAIREKVLGPEHQDVAGGLDKVAQF 309
            QG+Y EAEPL++RSLAIREKVLG  H DVA  L+ +A F
Sbjct:   19 QGRYNEAEPLYQRSLAIREKVLGENHPDVALSLNNLASF 57
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1070.950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJK0_9PHAE9.950e-1057.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G722_ECTSI2.540e-976.92NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KB97_9PHAE6.010e-961.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3K8_9PHAE1.990e-863.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A351SVW6_9DELT2.960e-893.33CHAT domain-containing protein n=1 Tax=Deltaproteo... [more]
A0A6H5KIY6_9PHAE1.000e-779.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8Z8_9PHAE1.730e-776.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A533TP31_CHLSQ2.800e-778.79Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
A0A1F4GZ05_9PROT4.840e-767.57Uncharacterized protein n=2 Tax=unclassified Betap... [more]
A0A0J9EWN6_9CYAN5.470e-766.67Kinesin (Fragment) n=1 Tax=Limnoraphis robusta CS-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1070contigS-firma_F_contig1070:7702..8027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G722
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Evalue3.6e-10
EggNOG OGsCOG0457@1|root,KOG4658@1|root,KOG1840@2759|Eukaryota,KOG4658@2759|Eukaryota
DescriptionADP binding
COG categoryS
BRITEko00000,ko00001,ko03019,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.5324125-CDS-S-firma_F_contig1070:7701..80131622815610.5324125-CDS-S-firma_F_contig1070:7701..8013Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1070 7702..8013 +
1696949452.3330736-CDS-S-firma_F_contig1070:7701..80131696949452.3330736-CDS-S-firma_F_contig1070:7701..8013Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1070 7702..8013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.5467582-UTR-S-firma_F_contig1070:8013..80271622815610.5467582-UTR-S-firma_F_contig1070:8013..8027Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1070 8014..8027 +
1696949452.3428135-UTR-S-firma_F_contig1070:8013..80271696949452.3428135-UTR-S-firma_F_contig1070:8013..8027Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1070 8014..8027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1070.950.1prot_S-firma_F_contig1070.950.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1070 7702..8013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1070.950.1

>prot_S-firma_F_contig1070.950.1 ID=prot_S-firma_F_contig1070.950.1|Name=mRNA_S-firma_F_contig1070.950.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=104bp
CRKIRCESNSSTVLAHVLFAKGQQFPVICAHVHHNGDRLRIYTHEEEINL
YTLKPHPLEVFSTFQGKYAEAEPLFERSLAIREKVLGPEHQDVAGGLDKV
AQF*
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mRNA from alignment at S-firma_F_contig1070:7702..8027+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1070.950.1 ID=mRNA_S-firma_F_contig1070.950.1|Name=mRNA_S-firma_F_contig1070.950.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=326bp|location=Sequence derived from alignment at S-firma_F_contig1070:7702..8027+ (Sphaerotrichia firma ET2_F female)
TGTCGCAAAATCAGGTGCGAATCGAATAGCAGTACTGTCTTGGCTCATGT
TTTGTTTGCGAAGGGTCAACAGTTCCCCGTAATATGCGCCCATGTACATC
ACAACGGCGACCGACTGCGTATTTACACTCATGAAGAAGAGATTAACCTC
TATACTCTGAAACCCCACCCTCTCGAGGTTTTCTCAACATTCCAAGGCAA
GTATGCTGAAGCTGAGCCCCTCTTCGAGAGGTCACTAGCCATTCGCGAGA
AGGTGCTGGGCCCGGAGCACCAAGATGTGGCCGGTGGTCTAGACAAAGTT
GCGCAGTTTTAGGGAGCGCAGGTGGG
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Coding sequence (CDS) from alignment at S-firma_F_contig1070:7702..8027+

>mRNA_S-firma_F_contig1070.950.1 ID=mRNA_S-firma_F_contig1070.950.1|Name=mRNA_S-firma_F_contig1070.950.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=624bp|location=Sequence derived from alignment at S-firma_F_contig1070:7702..8027+ (Sphaerotrichia firma ET2_F female)
TGTCGCAAAATCAGGTGCGAATCGAATAGCAGTACTGTCTTGGCTCATGT
TTTGTTTGCGAAGGGTCAACAGTTCCCCGTAATATGCGCCCATGTACATC
ACAACGGCGACCGACTGCGTATTTACACTCATGAAGAAGAGATTAACCTC
TATACTCTGAAACCCCACCCTCTCGAGGTTTTCTCAACATTCCAAGGCAA
GTATGCTGAAGCTGAGCCCCTCTTCGAGAGGTCACTAGCCATTCGCGAGA
AGGTGCTGGGCCCGGAGCACCAAGATGTGGCCGGTGGTCTAGACAAAGTT
GCGCAGTTTTAGTGTCGCAAAATCAGGTGCGAATCGAATAGCAGTACTGT
CTTGGCTCATGTTTTGTTTGCGAAGGGTCAACAGTTCCCCGTAATATGCG
CCCATGTACATCACAACGGCGACCGACTGCGTATTTACACTCATGAAGAA
GAGATTAACCTCTATACTCTGAAACCCCACCCTCTCGAGGTTTTCTCAAC
ATTCCAAGGCAAGTATGCTGAAGCTGAGCCCCTCTTCGAGAGGTCACTAG
CCATTCGCGAGAAGGTGCTGGGCCCGGAGCACCAAGATGTGGCCGGTGGT
CTAGACAAAGTTGCGCAGTTTTAG
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