mRNA_S-firma_F_contig10699.938.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10699.938.1
Unique NamemRNA_S-firma_F_contig10699.938.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10699.938.1 vs. uniprot
Match: D8LNC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC6_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 2.640e-6
Identity = 33/69 (47.83%), Postives = 40/69 (57.97%), Query Frame = 3 
Query:   69 MEGNAVDGETFGDAAGKAELPREGDDGSAMMMXXXXXGAAAGAGDVSDSLPEFFNTKGTSGDQEFSRCV 275
            MEG   D ETFG      E  R GD+ +A MM          AG ++D+LP+FFN KGTSGDQEFS  +
Sbjct:    1 MEGKDADDETFGGRRDGGEQER-GDNSNASMMMA--------AGGLNDNLPDFFNDKGTSGDQEFSSLM 60
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10699.938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNC6_ECTSI2.640e-647.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10699contigS-firma_F_contig10699:391..1248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LNC6
Max annot lvl2759|Eukaryota
Evalue1.86e-07
EggNOG OGs29QII@1|root,2RX8Q@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Model size284
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10699.938.1prot_S-firma_F_contig10699.938.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10699 391..1180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.283328-CDS-S-firma_F_contig10699:390..5931622815609.283328-CDS-S-firma_F_contig10699:390..593Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10699 391..593 -
1696949451.408535-CDS-S-firma_F_contig10699:390..5931696949451.408535-CDS-S-firma_F_contig10699:390..593Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10699 391..593 -
1622815609.3030326-CDS-S-firma_F_contig10699:1167..11801622815609.3030326-CDS-S-firma_F_contig10699:1167..1180Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10699 1168..1180 -
1696949451.4479008-CDS-S-firma_F_contig10699:1167..11801696949451.4479008-CDS-S-firma_F_contig10699:1167..1180Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10699 1168..1180 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.3188462-UTR-S-firma_F_contig10699:1180..12481622815609.3188462-UTR-S-firma_F_contig10699:1180..1248Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10699 1181..1248 -
1696949451.45725-UTR-S-firma_F_contig10699:1180..12481696949451.45725-UTR-S-firma_F_contig10699:1180..1248Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10699 1181..1248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10699.938.1

>prot_S-firma_F_contig10699.938.1 ID=prot_S-firma_F_contig10699.938.1|Name=mRNA_S-firma_F_contig10699.938.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=72bp
MEGNAVDGETFGDAAGKAELPREGDDGSAMMMTMMMMGAAAGAGDVSDSL
PEFFNTKGTSGDQEFSRCVCV*
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mRNA from alignment at S-firma_F_contig10699:391..1248-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10699.938.1 ID=mRNA_S-firma_F_contig10699.938.1|Name=mRNA_S-firma_F_contig10699.938.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=858bp|location=Sequence derived from alignment at S-firma_F_contig10699:391..1248- (Sphaerotrichia firma ET2_F female)
CGAGAGCTTGACGGTGGGTAGCTCGGATAGCTCGCTCAGTGTGTCGCGTT
GTTTCTCTCAACGCTACCATGGAAGGGAACGGTGAGTGCACCCAGATTCT
TTGCAAGGCATGCACAACGGTAAACACATGGCTTCCGAAGTACGGTTGTG
TTTCTGCGGCAAGCATCATGCCCCCAAATTTGCTCTCCTCACCAGCGGTG
CGAAAACCTCGTCACCAGCTGAATCCATCGCCAGCCCTTCTGGGACACCC
TCAATGTTTACGGTGTTCAGTTCACGCCTTCACCACGTCGTGATTTCCTT
GATTGGCATAGTTTCGTGTCTGCAATCACACGCGATGTCGGCAACTCTGA
TCAAATGCATCTAGGGAGAACGATCCCCGCCCTCCCAAGACCGGCCCGGT
TCTATCAAGCCTTGGGCACCGCTCGATTGATAGCTGCAGCAAAGACTAAT
AAATATACACTGCTGCTGTCGCCGCCATTGATGGCAGCTCCTTAGGCCGC
ACCTTTTGAGGCTGTGCGCTCTCTCTCTACCGGTCTCTTTCGATTCGCGA
AAGTCCCCATGCCAACAAGGGTGGTGGTTCACACGTTCACACGCCCAAAA
CACCACTCGCGTTGCGTTTGATATGTTCGTCTCCCACACGTGGCATCAAC
ACCAGCCGTGGACGGTGAGACGTTTGGCGACGCCGCCGGCAAGGCGGAGT
TGCCGCGGGAGGGCGATGACGGCAGCGCGATGATGATGACGATGATGATG
ATGGGCGCCGCCGCGGGCGCAGGAGACGTCAGCGATAGCCTTCCCGAGTT
CTTCAACACCAAGGGCACCTCCGGGGATCAGGAGTTTTCGAGGTGTGTGT
GTGTATGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10699:391..1248-

>mRNA_S-firma_F_contig10699.938.1 ID=mRNA_S-firma_F_contig10699.938.1|Name=mRNA_S-firma_F_contig10699.938.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=432bp|location=Sequence derived from alignment at S-firma_F_contig10699:391..1248- (Sphaerotrichia firma ET2_F female)
ATGGAAGGGAACGATGGAAGGGAACGCCGTGGACGGTGAGACGTTTGGCG
ACGCCGCCGGCAAGGCGGAGTTGCCGCGGGAGGGCGATGACGGCAGCGCG
ATGATGATGACGATGATGATGATGGGCGCCGCCGCGGGCGCAGGAGACGT
CAGCGATAGCCTTCCCGAGTTCTTCAACACCAAGGGCACCTCCGGGGATC
AGGAGTTTTCGAGGTGTGTGTGTGTATGACCGTGGACGGTGAGACGTTTG
GCGACGCCGCCGGCAAGGCGGAGTTGCCGCGGGAGGGCGATGACGGCAGC
GCGATGATGATGACGATGATGATGATGGGCGCCGCCGCGGGCGCAGGAGA
CGTCAGCGATAGCCTTCCCGAGTTCTTCAACACCAAGGGCACCTCCGGGG
ATCAGGAGTTTTCGAGGTGTGTGTGTGTATGA
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