mRNA_S-firma_F_contig10691.935.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10691.935.1 vs. uniprot
Match: D8LTZ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTZ9_ECTSI) HSP 1 Score: 244 bits (623), Expect = 4.300e-77 Identity = 123/157 (78.34%), Postives = 134/157 (85.35%), Query Frame = 1
Query: 1 VAGLPLLVPFLAIVTVVGGIGALLAGAVWVFSRGGRAWVQGVVQPVYDKNLFVAWQRFFFQVLYPVGPGPSPARIARSLVPTGMWAKLAMSITVDAIGCTSYAVPVLGESADVLWAPMSYLLIDAMYHDSSPWAGVFGAMEELLPFTDIIPTATLAW 471
VAGLPLLVP L +V VGG+GALL AVW+FSRGGRAWVQ V+PVYD+ R +VLYPVGPGPSPARIA+ LVPTGMW+KLAMSI VD IGCTSY VP+LGESAD+LWAP+SYLLIDAMYH SSPWAGVFGAMEELLPFTDIIPTATLAW
Sbjct: 230 VAGLPLLVPMLIVVAAVGGVGALLTAAVWLFSRGGRAWVQRAVRPVYDRV-----GRDNPEVLYPVGPGPSPARIAQCLVPTGMWSKLAMSIAVDTIGCTSYIVPILGESADLLWAPVSYLLIDAMYHGSSPWAGVFGAMEELLPFTDIIPTATLAW 381
BLAST of mRNA_S-firma_F_contig10691.935.1 vs. uniprot
Match: W7TYL2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYL2_9STRA) HSP 1 Score: 133 bits (334), Expect = 8.550e-34 Identity = 73/156 (46.79%), Postives = 100/156 (64.10%), Query Frame = 1
Query: 7 GLPLLVPFLAIVTVVGGIGALLAGAVWVFS-RGGRAWVQGVVQPVYDKNLFVAWQRFFFQVLYPVGPGPSPARIARSLVPTGMWAKLAMSITVDAIGCTSYAVPVLGESADVLWAPMSYLLIDAMYHDSSPWAGVFGAMEELLPFTDIIPTATLAW 471
GLP+ +P L ++ +V G+ L+A + S R GR V+ +V PV K A + Q+LY GP PSP RIA++ P G W +L S+ +D IG +SY +PVLGE D+ WAP+ + + AMY ++SP+A G +EELLPFTDIIPTATLAW
Sbjct: 288 GLPVFLPLL-LLGLVAGLTMLIASIILALSSRAGRGRVEALVDPVIRKLTHTATGQ---QLLYETGPRPSPLRIAKTFAPKGRWERLVTSLILDTIGASSYLLPVLGEFTDLAWAPLFAVALHAMYSETSPYAHYVGLVEELLPFTDIIPTATLAW 439
BLAST of mRNA_S-firma_F_contig10691.935.1 vs. uniprot
Match: A0A6U1M333_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1M333_9STRA) HSP 1 Score: 118 bits (296), Expect = 2.770e-31 Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 1
Query: 181 QVLYPVGPGPSPARIARSLVPTGMWAKLAMSITVDAIGCTSYAVPVLGESADVLWAPMSYLLIDAMYHDSSPWAGVFGAMEELLPFTDIIPTATLAW 471
Q+LY GP PS + + +L+PT +W KL +S+ +D IG +SY +PVLGE D LWAPM +L+ MY DS PWA G EELLPFTDI+PTAT+AW
Sbjct: 11 QLLYCTGPCPSTSEVVLALMPTDVWVKLGLSLVIDTIGNSSYLLPVLGEVVDPLWAPMQMMLLYYMYGDSVPWAPYVGLTEELLPFTDIVPTATIAW 107
BLAST of mRNA_S-firma_F_contig10691.935.1 vs. uniprot
Match: A0A836CGD0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGD0_9STRA) HSP 1 Score: 121 bits (304), Expect = 4.060e-30 Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 1
Query: 181 QVLYPVGPGPSPARIARSLVPTGMWAKLAMSITVDAIGCTSYAVPVLGESADVLWAPMSYLLIDAMYHDSSPWAGVFGAMEELLPFTDIIPTATLAW 471
+++Y GP P+P ++ R + P W KLA S+ VD IGCTSYA+PVLGE DV WAP+S +LI AMY D P+ G EE+LPFTDIIPTA+LAW
Sbjct: 251 RIMYNTGPRPTPMQVLRYVAPKSKWPKLAASVAVDFIGCTSYALPVLGEVGDVAWAPLSAVLIAAMYDDKQPYMAYMGFAEEILPFTDIIPTASLAW 347
BLAST of mRNA_S-firma_F_contig10691.935.1 vs. uniprot
Match: B8C7V5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7V5_THAPS) HSP 1 Score: 121 bits (304), Expect = 1.430e-29 Identity = 64/157 (40.76%), Postives = 91/157 (57.96%), Query Frame = 1
Query: 1 VAGLPLLVPFLAIVTVVGGIGALLAGAVWVFSRGGRAWVQGVVQPVYDKNLFVAWQRFFFQVLYPVGPGPSPARIARSLVPTGMWAKLAMSITVDAIGCTSYAVPVLGESADVLWAPMSYLLIDAMYHDSSPWAGVFGAMEELLPFTDIIPTATLAW 471
+ G+P +P + I+ A++ +R GR +Q V +P Y L + +++Y VGP PSP +A +++PT M KL +S+ VD IG SY +PVLGE D+ WAPMS +L+ AMY D P +EELLPFTDI+P+ATL W
Sbjct: 284 IIGIPFFLPIVLIILAAAATIGAAGSALYFSTREGRTKIQHVAEPTYQTFLMTKTGQ---RIVYDVGPRPSPQSLAHAVLPTDMIGKLVVSLVVDFIGSASYLLPVLGEGFDLTWAPMSMILVGAMYDDVMPNLKYVALIEELLPFTDILPSATLGW 437
BLAST of mRNA_S-firma_F_contig10691.935.1 vs. uniprot
Match: A0A7S2VHH7_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VHH7_9STRA) HSP 1 Score: 120 bits (302), Expect = 2.190e-29 Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = 1
Query: 1 VAGLPLLVPFLAIVTVVGGIGALLAGAVWVFSRGGRAWVQGVVQPVYDKNLFVAWQRFFFQVLYPVGPGPSPARIARSLVPTGMWAKLAMSITVDAIGCTSYAVPVLGESADVLWAPMSYLLIDAMYHDSSPWAGVFGAMEELLPFTDIIPTATLAW 471
+ G+P +P + IV +G + +V+ +R GR +Q V +P Y L + +++Y VGP PSP +A +++P+ M KL +S+ +DAIG SY +P+ GE D+ WAPMS +L+ A+Y D P +EELLPFTD IP+ATL W
Sbjct: 260 IIGIPFFLPIILIVLTLGLSLGAIGSSVYFSTRSGRTRIQHVAEPSYQTFLMTKTGQ---RIIYDVGPRPSPQSLAHAVLPSDMIGKLIVSLVIDAIGSASYLIPLAGEGFDLTWAPMSMILVGALYDDVMPNLKYIALIEELLPFTDFIPSATLGW 413
BLAST of mRNA_S-firma_F_contig10691.935.1 vs. uniprot
Match: K0RA89_THAOC (Uncharacterized protein (Fragment) n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RA89_THAOC) HSP 1 Score: 119 bits (298), Expect = 1.130e-28 Identity = 62/154 (40.26%), Postives = 90/154 (58.44%), Query Frame = 1
Query: 10 LPLLVPFLAIVTVVGGIGALLAGAVWVFSRGGRAWVQGVVQPVYDKNLFVAWQRFFFQVLYPVGPGPSPARIARSLVPTGMWAKLAMSITVDAIGCTSYAVPVLGESADVLWAPMSYLLIDAMYHDSSPWAGVFGAMEELLPFTDIIPTATLAW 471
LP L+P L ++ +G I + G ++ +R GR +Q V +P Y L + +++Y VGP PSP +A +++P M KL S+ VD +G SY +P+ GE+ D+ WAP+S +L+ AMY D P MEELLP TD IP+ATL W
Sbjct: 298 LPFLLPVLMLLLTIGAISGAIGGGLYFSTREGRTRIQHVAEPSYQTFLMTKTGQ---RIVYDVGPRPSPQALAHAVLPQDMMGKLVASLLVDLVGSASYLIPLAGEAFDLTWAPVSMVLVGAMYDDVMPNLKYVALMEELLPLTDWIPSATLGW 448
BLAST of mRNA_S-firma_F_contig10691.935.1 vs. uniprot
Match: A0A7S4QJI5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QJI5_9STRA) HSP 1 Score: 114 bits (284), Expect = 3.750e-27 Identity = 60/157 (38.22%), Postives = 99/157 (63.06%), Query Frame = 1
Query: 7 GLPLLVPFLAIVTVVGGIGALLAGAVWVFSRGGRAWV-QGVVQPVYDKNLFV-AWQRFFFQVLYPVGPGPSPARIARSLVPTGMWAKLAMSITVDAIGCTSYAVPVLGESADVLWAPMSYLLIDAMYHDSSPWAGVFGAMEELLPFTDIIPTATLAW 471
GLP +P LA +T + +++ ++ + GR + Q ++ P+ + L A QR ++Y +GP P+P +A+S++PT +W+KL +S+ +D +G +SY +P+ GE+ D+ WAP+ +LI AMY D SP +EE+LPFTD+IP+ATL W
Sbjct: 201 GLPFFLPLLAALTTIASALSVVVAILYFSTPQGRERLGQTLIYPLLNTVLHTPAGQR----LVYDIGPRPTPKSLAQSVLPTDIWSKLVVSLVIDFVGSSSYLIPIAGEALDLSWAPIQTILIAAMYDDVSPNLKYVSFVEEILPFTDVIPSATLGW 353
BLAST of mRNA_S-firma_F_contig10691.935.1 vs. uniprot
Match: A0A7S4HQ87_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HQ87_9STRA) HSP 1 Score: 114 bits (284), Expect = 6.600e-27 Identity = 64/158 (40.51%), Postives = 92/158 (58.23%), Query Frame = 1
Query: 1 VAGLPLLVPFLAI-VTVVGGIGALLAGAVWVFSRGGRAWVQGVVQPVYDKNLFVAWQRFFFQVLYPVGPGPSPARIARSLVPTGMWAKLAMSITVDAIGCTSYAVPVLGESADVLWAPMSYLLIDAMYHDSSPWAGVFGAMEELLPFTDIIPTATLAW 471
+ GLP +P L + +T +GA+ G+++V +R GRA + V PVY + F LY GP PSP +AR ++P M KL S+ +D IG +SY +P++GE+ D+ WAP +L+ AMY D SP EE+LPFTD+IP+AT W
Sbjct: 241 IIGLPFFLPLLVVLITFAASVGAIF-GSLYVSTRDGRAKIAPFVTPVYSTFASTPAGQSF---LYETGPRPSPVTLARCVLPDSMTGKLIASLLIDLIGSSSYLLPLVGEAFDLSWAPTQAVLVAAMYDDVSPSLKYVAFAEEILPFTDLIPSATYGW 394
BLAST of mRNA_S-firma_F_contig10691.935.1 vs. uniprot
Match: A0A7S4QI85_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QI85_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.090e-26 Identity = 60/157 (38.22%), Postives = 99/157 (63.06%), Query Frame = 1
Query: 7 GLPLLVPFLAIVTVVGGIGALLAGAVWVFSRGGRAWV-QGVVQPVYDKNLFV-AWQRFFFQVLYPVGPGPSPARIARSLVPTGMWAKLAMSITVDAIGCTSYAVPVLGESADVLWAPMSYLLIDAMYHDSSPWAGVFGAMEELLPFTDIIPTATLAW 471
GLP +P LA +T + +++ ++ + GR + Q ++ P+ + L A QR ++Y +GP P+P +A+S++PT +W+KL +S+ +D +G +SY +P+ GE+ D+ WAP+ +LI AMY D SP +EE+LPFTD+IP+ATL W
Sbjct: 302 GLPFFLPLLAALTTIASALSVVVAILYFSTPQGRERLGQTLIYPLLNTVLHTPAGQR----LVYDIGPRPTPKSLAQSVLPTDIWSKLVVSLVIDFVGSSSYLIPIAGEALDLSWAPIQTILIAAMYDDVSPNLKYVSFVEEILPFTDVIPSATLGW 454 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10691.935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10691.935.1 >prot_S-firma_F_contig10691.935.1 ID=prot_S-firma_F_contig10691.935.1|Name=mRNA_S-firma_F_contig10691.935.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=158bp VAGLPLLVPFLAIVTVVGGIGALLAGAVWVFSRGGRAWVQGVVQPVYDKNback to top mRNA from alignment at S-firma_F_contig10691:3244..4839- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10691.935.1 ID=mRNA_S-firma_F_contig10691.935.1|Name=mRNA_S-firma_F_contig10691.935.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1596bp|location=Sequence derived from alignment at S-firma_F_contig10691:3244..4839- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10691:3244..4839- >mRNA_S-firma_F_contig10691.935.1 ID=mRNA_S-firma_F_contig10691.935.1|Name=mRNA_S-firma_F_contig10691.935.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=948bp|location=Sequence derived from alignment at S-firma_F_contig10691:3244..4839- (Sphaerotrichia firma ET2_F female)back to top |