mRNA_S-firma_F_contig10690.934.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10690.934.1
Unique NamemRNA_S-firma_F_contig10690.934.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10690.934.1 vs. uniprot
Match: D8LKD1_ECTSI (Aardvark n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD1_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 6.960e-11
Identity = 45/109 (41.28%), Postives = 56/109 (51.38%), Query Frame = 3 
Query:    3 DETVVSMVSSVDHGGL--KSMEPVPPSAVAXXXXXXXXGRHSRNASAEKVTVPPAAPXXXXXXXXXXKTAAAIGVVPTPPNNRPRSKAEQPIGALLEDFDSDGEGSYGP 323
            D+  +S+VSSV   G   K M     + +           HSR +SAE   V    P               +G+ P PP NRP S+AEQP+GALLEDFDSDGEG+YGP
Sbjct:  494 DDDGMSVVSSVVSTGKAGKKMMMTGATVLGSDGNGEEEEAHSRQSSAELTKV--VTPVAVTAPIPSTVPLGIVGLAPVPPPNRPLSRAEQPMGALLEDFDSDGEGNYGP 600
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10690.934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKD1_ECTSI6.960e-1141.28Aardvark n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10690contigS-firma_F_contig10690:1234..1996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LKD1
PFAMsArm,PARP,Pkinase,Pkinase_Tyr
Max annot lvl2759|Eukaryota
KEGG koko:K10352
KEGG Pathwayko04530,map04530
Evalue1.71e-11
EggNOG OGs2E3TK@1|root,2SATT@2759|Eukaryota
BRITEko00000,ko00001,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size340
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10690.934.1prot_S-firma_F_contig10690.934.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10690 1254..1996 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.9512844-UTR-S-firma_F_contig10690:1233..12531622815608.9512844-UTR-S-firma_F_contig10690:1233..1253Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10690 1234..1253 +
1696949451.230195-UTR-S-firma_F_contig10690:1233..12531696949451.230195-UTR-S-firma_F_contig10690:1233..1253Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10690 1234..1253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.9634168-CDS-S-firma_F_contig10690:1253..13761622815608.9634168-CDS-S-firma_F_contig10690:1253..1376Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10690 1254..1376 +
1696949451.2405562-CDS-S-firma_F_contig10690:1253..13761696949451.2405562-CDS-S-firma_F_contig10690:1253..1376Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10690 1254..1376 +
1622815608.9737873-CDS-S-firma_F_contig10690:1801..19961622815608.9737873-CDS-S-firma_F_contig10690:1801..1996Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10690 1802..1996 +
1696949451.2638726-CDS-S-firma_F_contig10690:1801..19961696949451.2638726-CDS-S-firma_F_contig10690:1801..1996Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10690 1802..1996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10690.934.1

>prot_S-firma_F_contig10690.934.1 ID=prot_S-firma_F_contig10690.934.1|Name=mRNA_S-firma_F_contig10690.934.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=106bp
MVSSVDHGGLKSMEPVPPSAVAAAAGAAAGGRHSRNASAEKVTVPPAAPI
TVPPAAAATKTAAAIGVVPTPPNNRPRSKAEQPIGALLEDFDSDGEGSYG
PGPEEP
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mRNA from alignment at S-firma_F_contig10690:1234..1996+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10690.934.1 ID=mRNA_S-firma_F_contig10690.934.1|Name=mRNA_S-firma_F_contig10690.934.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=763bp|location=Sequence derived from alignment at S-firma_F_contig10690:1234..1996+ (Sphaerotrichia firma ET2_F female)
AGGATGAAACAGTGGTCTCGATGGTATCTTCCGTCGACCACGGCGGCCTC
AAGTCGATGGAGCCGGTGCCGCCGTCCGCGGTCGCCGCCGCGGCGGGGGC
GGCGGCCGGGGGGCGACATTCCCGCAACGCGTCGGCGGAAAAGGTGCAAA
AAGGCGATATAACATACCCCCTTGCAAACTACGAAACTTAACAACCAACA
AACCTAACGGATTTTGCGGATTTTGTGATGTCGGCTGGGACGGGGAGGAT
TAGTGTGTATACAACAGTCCCCCTGGAACGACTTATTCACAGCAGTACGG
ACATATACGGCTGACGAATGTAGAAAATTTATTTAAAAGGCGTGGCTGGA
GGCCGGGGGGGGGGGGGGGCGAGGGGTTATTCGTTTTAATGCGTTCGTTC
TCTCCTTCCTTGCTGCTTGAAGAGAGAGCAACACATCAACACCGCGCCGG
ACGCCCCCAACCACATCAACACTGCTGTAAAACCTAAATAAAACCCTTCC
CCCTTTTTCATGACGACAATGCCCCCTCCCCCCCCCCCCCCCCCGAAAAC
CGCGCTTTGTTCCCGCAGGTTACGGTGCCCCCGGCGGCGCCAATCACGGT
GCCCCCGGCGGCGGCGGCCACCAAGACCGCCGCCGCGATAGGCGTGGTGC
CCACACCTCCCAACAACCGGCCCCGGTCGAAGGCGGAGCAGCCAATAGGG
GCCCTGCTGGAGGACTTTGACAGCGACGGGGAGGGCAGCTACGGACCTGG
GCCCGAGGAGCCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10690:1234..1996+

>mRNA_S-firma_F_contig10690.934.1 ID=mRNA_S-firma_F_contig10690.934.1|Name=mRNA_S-firma_F_contig10690.934.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=636bp|location=Sequence derived from alignment at S-firma_F_contig10690:1234..1996+ (Sphaerotrichia firma ET2_F female)
ATGGTATCTTCCGTCGACCACGGCGGCCTCAAGTCGATGGAGCCGGTGCC
GCCGTCCGCGGTCGCCGCCGCGGCGGGGGCGGCGGCCGGGGGGCGACATT
CCCGCAACGCGTCGGCGGAAAAGATGGTATCTTCCGTCGACCACGGCGGC
CTCAAGTCGATGGAGCCGGTGCCGCCGTCCGCGGTCGCCGCCGCGGCGGG
GGCGGCGGCCGGGGGGCGACATTCCCGCAACGCGTCGGCGGAAAAGGTTA
CGGTGCCCCCGGCGGCGCCAATCACGGTGCCCCCGGCGGCGGCGGCCACC
AAGACCGCCGCCGCGATAGGCGTGGTGCCCACACCTCCCAACAACCGGCC
CCGGTCGAAGGCGGAGCAGCCAATAGGGGCCCTGCTGGAGGACTTTGACA
GCGACGGGGAGGGCAGCTACGGACCTGGGCCCGAGGAGCCGGTTACGGTG
CCCCCGGCGGCGCCAATCACGGTGCCCCCGGCGGCGGCGGCCACCAAGAC
CGCCGCCGCGATAGGCGTGGTGCCCACACCTCCCAACAACCGGCCCCGGT
CGAAGGCGGAGCAGCCAATAGGGGCCCTGCTGGAGGACTTTGACAGCGAC
GGGGAGGGCAGCTACGGACCTGGGCCCGAGGAGCCG
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