mRNA_S-firma_F_contig10679.916.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10679.916.1
Unique NamemRNA_S-firma_F_contig10679.916.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10679.916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10679contigS-firma_F_contig10679:1820..5085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G985
Max annot lvl2880.D7G985|-
Evalue0.000166
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Model size2370
Cds size1278
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10679.916.1prot_S-firma_F_contig10679.916.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10679 3779..5056 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.2385352-UTR-S-firma_F_contig10679:1819..28241622815607.2385352-UTR-S-firma_F_contig10679:1819..2824Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10679 1820..2824 -
1696949450.0426805-UTR-S-firma_F_contig10679:1819..28241696949450.0426805-UTR-S-firma_F_contig10679:1819..2824Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10679 1820..2824 -
1622815607.2528598-UTR-S-firma_F_contig10679:3720..37781622815607.2528598-UTR-S-firma_F_contig10679:3720..3778Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10679 3721..3778 -
1696949450.055694-UTR-S-firma_F_contig10679:3720..37781696949450.055694-UTR-S-firma_F_contig10679:3720..3778Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10679 3721..3778 -
1622815607.2809057-UTR-S-firma_F_contig10679:5056..50851622815607.2809057-UTR-S-firma_F_contig10679:5056..5085Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10679 5057..5085 -
1696949450.0728114-UTR-S-firma_F_contig10679:5056..50851696949450.0728114-UTR-S-firma_F_contig10679:5056..5085Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10679 5057..5085 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.2696438-CDS-S-firma_F_contig10679:3778..50561622815607.2696438-CDS-S-firma_F_contig10679:3778..5056Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10679 3779..5056 -
1696949450.0638714-CDS-S-firma_F_contig10679:3778..50561696949450.0638714-CDS-S-firma_F_contig10679:3778..5056Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10679 3779..5056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10679.916.1

>prot_S-firma_F_contig10679.916.1 ID=prot_S-firma_F_contig10679.916.1|Name=mRNA_S-firma_F_contig10679.916.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=426bp
MVSLLGRRCGHPGCNTNASYGVHGSKRPEFCSRHAQDGMVSLVGRRCGFP
GCNVGANYGVNGSTKREFCSRHAQDGMVHVWVHRCGHPGCTTRATYGVDG
SKKPEFCSRHAQDGMINVVTRRCVHPGCTIRPHFGEPGNKREFCSRHSRE
GMVNLGLKRCGHPGCNTNASYGVNGSKKTEFCSRHAQDGMVSLLGRRCGH
PGCNTNASYGVHGSKRPEFCSRHAQDGMVSLVGRRCGHPGCNIHASYGVH
GSKRPEFCSRHAQDGMVSLVGRRCGFPGCNTHASYGVNGSKRSDFCLAHA
TDGMVNVRVKKCGHPGCNKGASVDVNFSTKREFCCVHAKQRTPSVHSRGV
SDSRIKKEICTEQLSGSSATRSDGKRVSKRGQAAASPVWAGSLDTMAAAA
EPFTGLSKRRRTAAGNGDIVSTGPT*
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mRNA from alignment at S-firma_F_contig10679:1820..5085-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10679.916.1 ID=mRNA_S-firma_F_contig10679.916.1|Name=mRNA_S-firma_F_contig10679.916.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3266bp|location=Sequence derived from alignment at S-firma_F_contig10679:1820..5085- (Sphaerotrichia firma ET2_F female)
AGTTCTGCAGCCGACACGCCCAGGACGGCATGGTTTCCCTATTGGGACGG
CGGTGCGGCCACCCAGGGTGCAACACGAATGCGAGCTACGGTGTGCACGG
CAGCAAGAGGCCGGAGTTCTGCAGCCGACACGCCCAGGACGGCATGGTTT
CCCTTGTGGGAAGGCGGTGCGGGTTCCCAGGTTGCAACGTGGGCGCGAAC
TACGGTGTGAACGGCAGCACCAAGAGGGAGTTCTGCAGCCGGCACGCCCA
GGACGGTATGGTTCACGTCTGGGTACACCGGTGTGGCCACCCAGGTTGCA
CCACGCGCGCGACCTACGGGGTGGATGGCAGCAAGAAGCCGGAGTTCTGC
AGCCGACACGCCCAGGACGGCATGATCAACGTCGTCACCAGGCGGTGCGT
TCACCCAGGTTGCACCATACGGCCGCATTTCGGTGAACCAGGCAACAAAC
GGGAGTTCTGCAGTCGGCATTCTCGGGAGGGCATGGTTAACCTCGGGCTG
AAGCGGTGCGGCCACCCAGGTTGCAACACGAATGCGAGCTACGGTGTGAA
CGGCAGCAAAAAAACGGAGTTCTGCAGCCGACACGCCCAGGACGGCATGG
TTTCCCTATTGGGACGGCGGTGCGGCCACCCAGGGTGCAACACGAATGCG
AGCTACGGTGTGCACGGCAGCAAGAGGCCGGAGTTCTGCAGCCGGCACGC
CCAGGACGGCATGGTTTCCCTTGTGGGACGGCGGTGCGGCCACCCAGGTT
GCAACATACATGCGAGCTACGGTGTGCACGGCAGCAAGAGGCCGGAGTTC
TGCAGCCGGCACGCCCAGGACGGCATGGTTTCCCTTGTGGGAAGGCGGTG
CGGGTTCCCAGGTTGCAACACGCATGCGAGCTACGGTGTGAACGGCAGCA
AGAGGTCGGACTTCTGCCTCGCACATGCAACTGATGGGATGGTTAACGTC
CGCGTGAAAAAGTGCGGCCACCCAGGGTGCAATAAGGGCGCGAGCGTTGA
TGTGAACTTCAGCACAAAGAGGGAGTTCTGTTGTGTGCACGCCAAGCAAA
GAACACCGAGCGTACATTCCAGAGGCGTGAGTGATAGTAGGATAAAGAAG
GAGATTTGCACTGAGCAGCTCTCGGGGTCAAGTGCGACGAGGAGCGACGG
CAAGCGGGTCTCCAAACGGGGCCAAGCGGCCGCTTCACCGGTCTGGGCAG
GTTCCCTCGACACAATGGCTGCTGCCGCGGAACCCTTCACGGGGTTGAGC
AAAAGACGGAGGACTGCAGCAGGCAACGGCGACATCGTTTCTACTGGTCC
GACGTAGCAAGATCAAACGCAAGGAGGGCGGACACCGTTTCCATCGTGCC
GCAGTGCCAAATCCGGTGAGTGCAACCATTGCTTGTGTGCATGCTTCGGA
TGCGAGTGGAGAAATGCATTTGAGAGAGCAGGGGCGGCGTTACAATGACA
AAATGGCAGCGAGAAGGAAGAATGTCCGGTCACCAGTACATACAACTACC
AGTATTTGGCGTGCGCGCGCGTCTGCAGGGCGAGTGAGCCATTGAACGCA
GGGGTGTCCGGCGTGCGTGCATATGAAAAACGAGCAGTTTGTCGAGACAT
CAACATGTGTCTCTCGAGTTCGTACTTCAGCAGGAACACGAGCTCTTGCC
TTGCGTCGAAGTTGGGGCTGGGTGTCATTGTCAGGGTTCGTTCGTTGGTC
GTATTCTTCGCCTCAAAGTGCACACGGACGGACGAAGGCAACGGATCAAA
CAGACGCGGCATCCAGTTGTCAATAATTCTCGCTTTGTTTGGGCTATGTT
GACCACCTTCTCCTCGTCGGGTCGAGCTCATACTCGCAACTTTTTTTTGA
TGCGAGGGTCAAAACCGTGTTCTAAATTAGGATGAGGCCCGAAGACACCC
AAAATCAGGGGTGTGCTCTGTACGTTGAACCGCAACTTGCGACACTTAAA
CAAAATACTTCGTGTATACGCGAACACTTAGAATCTGTTTCCCGACCACT
CGCCATACGACAGCTCATTCTGGAGCTGGACAAAGAGCAAAAGGGCGACC
CTACAGAGGTTCACCGCTGTTGAGTTCGAGCTGCCTGCTCCGTGCATAGA
ATAAACATGCACGGGTAATGGCGCGTACCTTACACTACGCACAACAACCA
GTACTTCGGCAACTTCCTCCATCGTGGTTGACATGCCTCATGTGTTTAAC
ACAGGTCGACTTAAAAAACGTTTGTCTCATGTGCATCCTTCGACTTCGAT
GACATCAACAGGTTCCGTTCCAGCCGAAAGCATCATCTACTTTCCGCAGC
AGCCCCCTGCTGTGCGAGAGAACGGTCGCCTCTACTGTACCCTACTCGGT
ACAACACCTATCAGCAGCAAAAGTTACAGCGAATGGCGGGTGCAGCGGAG
TGTCTTGCGCTCTTCTCTCCCAGCTCTCTGGGATTGATGTGGAGGGCGTC
GTTGTGGCGGCGGACTGTGTACAGAACCAACGAACGCATCGTGTACTCCC
AGCGTTCGATGCGGTGGGGTTCGCGGGGAGACAGCACATGCAACCTGCAC
ATGCAACCTGAAAGTAGAAAAAAAGACTAATAAAACGTGTGATTGATTTC
TTCGTCGATTCCGGGAAGCAGTAGCGCCCCAACCGCACTGCAGCTAGCAT
TACAAGGAGAAGGACGTCTCCGCCGGGGTAGAATGGGCGAGGTGTCTTAC
TATATTCCGGAGTAGGAAGAGGGGCCCCTCTCTACCTACAGTAGTGCATA
TTCTTTTTTCTATAAACGTCAGCCGTATACGTCCGTCCTGTGAATACATC
GTTCCAGGGACTCTTGTACACACACTATTTTCGTCGCACGGTTTCGGTGT
GGGTGATGGTAATTATCGTTTTCGTCGAAAGAATTCAACAAGCTATCTGG
CTGGTTAGGTCTGACGTTGGTGTTCGTAGTCTAGTTTTAAGTTGTTGAAC
GCGGCAGATACCGGATACCAACCCGGGTTCGAGGCCCTGCACTGCATATT
AAATCGTATCATATTATGGTGACGGTGGGCCAAGGTTAATATTAGTCTTG
TCCACGCTGCCGCCGCTGACATTGCCGTTGTCACTGGCATAGCTCCACCT
CGCTCTCCGTCTTTTGTGTTTTTTTCGCGAGGAAGAGTAAGAGGCTACTA
CCGTAACACTTGGCAACGGGTGATGAGTCTTCCACCGCCCTCGTTCAAAG
AAGAGTACAGGTGGCAGCACAGCAATGTAGACTAGTGAGATTGTAGATGT
TTTCGTTCTTCTTCCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10679:1820..5085-

>mRNA_S-firma_F_contig10679.916.1 ID=mRNA_S-firma_F_contig10679.916.1|Name=mRNA_S-firma_F_contig10679.916.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2556bp|location=Sequence derived from alignment at S-firma_F_contig10679:1820..5085- (Sphaerotrichia firma ET2_F female)
ATGGTTTCCCTATTGGGACGGCGGTGCGGCCACCCAGGGTGCAACACGAA
TGCGAGCTACGGTGTGCACGGCAGCAAGAGGCCGGAGTTCTGCAGCCGAC
ACGCCCAGGACGGCATGGTTTCCCTTGTGGGAAGGCGGTGCGGGTTCCCA
GGTTGCAACGTGGGCGCGAACTACGGTGTGAACGGCAGCACCAAGAGGGA
GTTCTGCAGCCGGCACGCCCAGGACGGTATGGTTCACGTCTGGGTACACC
GGTGTGGCCACCCAGGTTGCACCACGCGCGCGACCTACGGGGTGGATGGC
AGCAAGAAGCCGGAGTTCTGCAGCCGACACGCCCAGGACGGCATGATCAA
CGTCGTCACCAGGCGGTGCGTTCACCCAGGTTGCACCATACGGCCGCATT
TCGGTGAACCAGGCAACAAACGGGAGTTCTGCAGTCGGCATTCTCGGGAG
GGCATGGTTAACCTCGGGCTGAAGCGGTGCGGCCACCCAGGTTGCAACAC
GAATGCGAGCTACGGTGTGAACGGCAGCAAAAAAACGGAGTTCTGCAGCC
GACACGCCCAGGACGGCATGGTTTCCCTATTGGGACGGCGGTGCGGCCAC
CCAGGGTGCAACACGAATGCGAGCTACGGTGTGCACGGCAGCAAGAGGCC
GGAGTTCTGCAGCCGGCACGCCCAGGACGGCATGGTTTCCCTTGTGGGAC
GGCGGTGCGGCCACCCAGGTTGCAACATACATGCGAGCTACGGTGTGCAC
GGCAGCAAGAGGCCGGAGTTCTGCAGCCGGCACGCCCAGGACGGCATGGT
TTCCCTTGTGGGAAGGCGGTGCGGGTTCCCAGGTTGCAACACGCATGCGA
GCTACGGTGTGAACGGCAGCAAGAGGTCGGACTTCTGCCTCGCACATGCA
ACTGATGGGATGGTTAACGTCCGCGTGAAAAAGTGCGGCCACCCAGGGTG
CAATAAGGGCGCGAGCGTTGATGTGAACTTCAGCACAAAGAGGGAGTTCT
GTTGTGTGCACGCCAAGCAAAGAACACCGAGCGTACATTCCAGAGGCGTG
AGTGATAGTAGGATAAAGAAGGAGATTTGCACTGAGCAGCTCTCGGGGTC
AAGTGCGACGAGGAGCGACGGCAAGCGGGTCTCCAAACGGGGCCAAGCGG
CCGCTTCACCGGTCTGGGCAGGTTCCCTCGACACAATGGCTGCTGCCGCG
GAACCCTTCACGGGGTTGAGCAAAAGACGGAGGACTGCAGCAGGCAACGG
CGACATCGTTTCTACTGGTCCGACGTAGATGGTTTCCCTATTGGGACGGC
GGTGCGGCCACCCAGGGTGCAACACGAATGCGAGCTACGGTGTGCACGGC
AGCAAGAGGCCGGAGTTCTGCAGCCGACACGCCCAGGACGGCATGGTTTC
CCTTGTGGGAAGGCGGTGCGGGTTCCCAGGTTGCAACGTGGGCGCGAACT
ACGGTGTGAACGGCAGCACCAAGAGGGAGTTCTGCAGCCGGCACGCCCAG
GACGGTATGGTTCACGTCTGGGTACACCGGTGTGGCCACCCAGGTTGCAC
CACGCGCGCGACCTACGGGGTGGATGGCAGCAAGAAGCCGGAGTTCTGCA
GCCGACACGCCCAGGACGGCATGATCAACGTCGTCACCAGGCGGTGCGTT
CACCCAGGTTGCACCATACGGCCGCATTTCGGTGAACCAGGCAACAAACG
GGAGTTCTGCAGTCGGCATTCTCGGGAGGGCATGGTTAACCTCGGGCTGA
AGCGGTGCGGCCACCCAGGTTGCAACACGAATGCGAGCTACGGTGTGAAC
GGCAGCAAAAAAACGGAGTTCTGCAGCCGACACGCCCAGGACGGCATGGT
TTCCCTATTGGGACGGCGGTGCGGCCACCCAGGGTGCAACACGAATGCGA
GCTACGGTGTGCACGGCAGCAAGAGGCCGGAGTTCTGCAGCCGGCACGCC
CAGGACGGCATGGTTTCCCTTGTGGGACGGCGGTGCGGCCACCCAGGTTG
CAACATACATGCGAGCTACGGTGTGCACGGCAGCAAGAGGCCGGAGTTCT
GCAGCCGGCACGCCCAGGACGGCATGGTTTCCCTTGTGGGAAGGCGGTGC
GGGTTCCCAGGTTGCAACACGCATGCGAGCTACGGTGTGAACGGCAGCAA
GAGGTCGGACTTCTGCCTCGCACATGCAACTGATGGGATGGTTAACGTCC
GCGTGAAAAAGTGCGGCCACCCAGGGTGCAATAAGGGCGCGAGCGTTGAT
GTGAACTTCAGCACAAAGAGGGAGTTCTGTTGTGTGCACGCCAAGCAAAG
AACACCGAGCGTACATTCCAGAGGCGTGAGTGATAGTAGGATAAAGAAGG
AGATTTGCACTGAGCAGCTCTCGGGGTCAAGTGCGACGAGGAGCGACGGC
AAGCGGGTCTCCAAACGGGGCCAAGCGGCCGCTTCACCGGTCTGGGCAGG
TTCCCTCGACACAATGGCTGCTGCCGCGGAACCCTTCACGGGGTTGAGCA
AAAGACGGAGGACTGCAGCAGGCAACGGCGACATCGTTTCTACTGGTCCG
ACGTAG
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