mRNA_S-firma_F_contig10673.912.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10673.912.1 vs. uniprot
Match: A0A6H5L4N8_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4N8_9PHAE) HSP 1 Score: 280 bits (715), Expect = 1.880e-85 Identity = 145/152 (95.39%), Postives = 148/152 (97.37%), Query Frame = 1
Query: 7 DEARRKRLEREKAARENRTEDSLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFSKETLCEKVAELNETMKVDVKLPGMLVIDTPGHESFTNLRSRGSSLCDIAILVVDLMHGLEPQTIESLNLLRSKRTPFVIALNKV 462
DEARRKRLEREKAARE R DSLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFSKETLCEKV ELN+TMKVDVKLPGML+IDTPGHESFTNLRSRGSSLCDIAILVVDLMHGLEPQTIESLNLLRSKRTPFVIALNK+
Sbjct: 455 DEARRKRLEREKAAREARNADSLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFSKETLCEKVEELNQTMKVDVKLPGMLIIDTPGHESFTNLRSRGSSLCDIAILVVDLMHGLEPQTIESLNLLRSKRTPFVIALNKI 606
BLAST of mRNA_S-firma_F_contig10673.912.1 vs. uniprot
Match: A0A836CHS5_9STRA (Tr-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHS5_9STRA) HSP 1 Score: 230 bits (587), Expect = 1.380e-67 Identity = 116/135 (85.93%), Postives = 127/135 (94.07%), Query Frame = 1
Query: 58 RTEDSLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFSKETLCEKVAELNETMKVDVKLPGMLVIDTPGHESFTNLRSRGSSLCDIAILVVDLMHGLEPQTIESLNLLRSKRTPFVIALNKV 462
R+ SLRSPIVCIMGHVDTGKTKLLDKIRQT+VQEGEAGGITQQIGATFF+KETL +KVA L + ++V+LPGMLVIDTPGHESFTNLRSRGSSLCDIAILV+DLMHGLEPQTIESLNLLRSKRTPFV+ALNK+
Sbjct: 419 RSAASLRSPIVCIMGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATFFAKETLKDKVAVLAQEAGLEVRLPGMLVIDTPGHESFTNLRSRGSSLCDIAILVIDLMHGLEPQTIESLNLLRSKRTPFVVALNKI 553
BLAST of mRNA_S-firma_F_contig10673.912.1 vs. uniprot
Match: I2CSG6_NANGC (Eukaryotic translation initiation factor 5B (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSG6_NANGC) HSP 1 Score: 228 bits (581), Expect = 7.210e-67 Identity = 113/152 (74.34%), Postives = 135/152 (88.82%), Query Frame = 1
Query: 7 DEARRKRLEREKAARENRTEDSLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFSKETLCEKVAELNETMKVDVKLPGMLVIDTPGHESFTNLRSRGSSLCDIAILVVDLMHGLEPQTIESLNLLRSKRTPFVIALNKV 462
+EAR++R+ RE+AA ++R+ + LRSPI CIMGHVDTGKTKLLD IR+T+VQEGEAGGITQQIGATFF ++ + + E NE+ +DVKLPG+L+IDTPGHESFTNLRSRGS+LCDIAILV+DLMHGLEPQTIESL LLR KRTPFV+ALNKV
Sbjct: 363 EEARKRRVAREEAALQSRSSEKLRSPICCIMGHVDTGKTKLLDNIRRTNVQEGEAGGITQQIGATFFPRDHILTRTKEANESFHLDVKLPGLLIIDTPGHESFTNLRSRGSTLCDIAILVIDLMHGLEPQTIESLQLLRRKRTPFVVALNKV 514
BLAST of mRNA_S-firma_F_contig10673.912.1 vs. uniprot
Match: G4YGI1_PHYSP (Eukaryotic translation initiation factor 5B n=2 Tax=Phytophthora TaxID=4783 RepID=G4YGI1_PHYSP) HSP 1 Score: 220 bits (561), Expect = 5.590e-66 Identity = 112/151 (74.17%), Postives = 129/151 (85.43%), Query Frame = 1
Query: 10 EARRKRLEREKAARENRTEDSLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFSKETLCEKVAELNETMKVDVKLPGMLVIDTPGHESFTNLRSRGSSLCDIAILVVDLMHGLEPQTIESLNLLRSKRTPFVIALNKV 462
EA +R ERE AAR N + D+LRSPI CIMGHVDTGKTKLLD IR+T VQ+ EAGGITQQIGATFF E + +K A L ETMK++ +LPG+LVIDTPGHESFTNLR+RGSSLCDIAILVVD+MHGLEPQT+ESL LLR K+ PFV+ALNK+
Sbjct: 9 EAAERRREREAAARANVSLDNLRSPICCIMGHVDTGKTKLLDNIRKTKVQDAEAGGITQQIGATFFPVEAIKQKTARLAETMKLEYRLPGLLVIDTPGHESFTNLRTRGSSLCDIAILVVDIMHGLEPQTLESLRLLRQKKAPFVVALNKI 159
BLAST of mRNA_S-firma_F_contig10673.912.1 vs. uniprot
Match: A0A7S4K8F1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K8F1_9STRA) HSP 1 Score: 224 bits (570), Expect = 1.860e-65 Identity = 114/152 (75.00%), Postives = 131/152 (86.18%), Query Frame = 1
Query: 7 DEARRKRLEREKAARENRTEDSLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFSKETLCEKVAELNETMKVDVKLPGMLVIDTPGHESFTNLRSRGSSLCDIAILVVDLMHGLEPQTIESLNLLRSKRTPFVIALNKV 462
DE +RKR+E+EKA RT D+LR PI IMGHVDTGKTKLLDKIR+T+VQ GEAGGITQQIGAT+F + TL + A+LNET K D+ +PGMLVIDTPGHESFTNLRSRGSSLCD+AILV+DLMHGLE QTIESLN+L+ K TPFV+ALNKV
Sbjct: 317 DEGKRKRIEQEKANLAARTRDNLRCPIAVIMGHVDTGKTKLLDKIRKTNVQGGEAGGITQQIGATYFEQSTLKTQTAKLNETEKFDITVPGMLVIDTPGHESFTNLRSRGSSLCDVAILVIDLMHGLEQQTIESLNMLKQKNTPFVVALNKV 468
BLAST of mRNA_S-firma_F_contig10673.912.1 vs. uniprot
Match: H8ZWR1_9EUKA (Eukaryotic translation initiation factor 5b (Fragment) n=1 Tax=Collodictyon triciliatum TaxID=190325 RepID=H8ZWR1_9EUKA) HSP 1 Score: 206 bits (523), Expect = 4.750e-65 Identity = 98/134 (73.13%), Postives = 120/134 (89.55%), Query Frame = 1
Query: 61 TEDSLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFSKETLCEKVAELNETMKVDVKLPGMLVIDTPGHESFTNLRSRGSSLCDIAILVVDLMHGLEPQTIESLNLLRSKRTPFVIALNKV 462
++D+LRSPI CI+GHVDTGKTKLLDKIR T+VQEGEAGGITQQIGATFF E++ + +++ K+ K+PG+L+IDTPGHESFTNLRSRGSSLCDIAILVVD+MHGLEPQTIES+NLL+ ++TPF++ALNKV
Sbjct: 49 SDDNLRSPICCILGHVDTGKTKLLDKIRSTNVQEGEAGGITQQIGATFFPMESIRQLTSKVGFDHKMAYKVPGLLIIDTPGHESFTNLRSRGSSLCDIAILVVDIMHGLEPQTIESINLLKMRKTPFIVALNKV 182
BLAST of mRNA_S-firma_F_contig10673.912.1 vs. uniprot
Match: A0A5D6XPT0_9STRA (Eukaryotic translation initiation factor 5B n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPT0_9STRA) HSP 1 Score: 223 bits (567), Expect = 6.500e-65 Identity = 111/143 (77.62%), Postives = 126/143 (88.11%), Query Frame = 1
Query: 34 REKAARENRTEDSLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFSKETLCEKVAELNETMKVDVKLPGMLVIDTPGHESFTNLRSRGSSLCDIAILVVDLMHGLEPQTIESLNLLRSKRTPFVIALNKV 462
RE+AA N + D+LRSPI CIMGHVDTGKTKLLD IR+T VQ+GEAGGITQQIGATFF E + +K A LNETMK++ KLPG+LVIDTPGHESFTNLRSRGSSLCDIAILVVD+MHGLEPQT+ESL LLR K+ PFV+ALNK+
Sbjct: 374 REEAALANVSLDNLRSPICCIMGHVDTGKTKLLDNIRKTKVQDGEAGGITQQIGATFFPVEAIKQKTARLNETMKLEYKLPGLLVIDTPGHESFTNLRSRGSSLCDIAILVVDIMHGLEPQTLESLRLLRQKKAPFVVALNKI 516
BLAST of mRNA_S-firma_F_contig10673.912.1 vs. uniprot
Match: A0A1E7FX92_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX92_9STRA) HSP 1 Score: 217 bits (553), Expect = 9.530e-65 Identity = 109/151 (72.19%), Postives = 127/151 (84.11%), Query Frame = 1
Query: 10 EARRKRLEREKAARENRTEDSLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFSKETLCEKVAELNETMKVDVKLPGMLVIDTPGHESFTNLRSRGSSLCDIAILVVDLMHGLEPQTIESLNLLRSKRTPFVIALNKV 462
E +RKR E EK R+ D LR P+ IMGHVDTGKTKLLDKIR+T+VQEGEAGGITQQIGAT+F K+TL + A+LN T D+K+PGMLVIDTPGHESF NLRSRGSSLCD+AILV+D+MHGLEPQTIESLN+LR K+ PFV+ALNK+
Sbjct: 8 EGKRKREEEEKINLAARSPDDLRCPVTVIMGHVDTGKTKLLDKIRKTNVQEGEAGGITQQIGATYFEKKTLETQTAKLNATEAFDIKIPGMLVIDTPGHESFANLRSRGSSLCDVAILVIDMMHGLEPQTIESLNMLREKKVPFVVALNKI 158
BLAST of mRNA_S-firma_F_contig10673.912.1 vs. uniprot
Match: A0A7S2Y322_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y322_9STRA) HSP 1 Score: 222 bits (565), Expect = 1.410e-64 Identity = 114/152 (75.00%), Postives = 133/152 (87.50%), Query Frame = 1
Query: 7 DEARRKRLEREKAARENRTEDSLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFSKETLCEKVAELNETMKVDVKLPGMLVIDTPGHESFTNLRSRGSSLCDIAILVVDLMHGLEPQTIESLNLLRSKRTPFVIALNKV 462
DE +RKR+E+EK + R+ D LR P+V IMGHVDTGKTKLLDKIR+T+VQEGEAGGITQQIGAT+F K+TL + A+LNET KV++K+PGMLVIDTPGHESFTNLRSRGSSLCD+AILVVDLMHGLE QTIESL +L ++ PFVIALNKV
Sbjct: 378 DEGKRKRMEQEKKNLDARSPDDLRCPVVVIMGHVDTGKTKLLDKIRKTNVQEGEAGGITQQIGATYFEKKTLEAQTAKLNETEKVELKVPGMLVIDTPGHESFTNLRSRGSSLCDVAILVVDLMHGLEQQTIESLQMLVKRQVPFVIALNKV 529
BLAST of mRNA_S-firma_F_contig10673.912.1 vs. uniprot
Match: A0A7S2KAZ8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KAZ8_9STRA) HSP 1 Score: 221 bits (564), Expect = 1.930e-64 Identity = 113/147 (76.87%), Postives = 128/147 (87.07%), Query Frame = 1
Query: 22 KRLEREKAARENRTEDSLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFSKETLCEKVAELNETMKVDVKLPGMLVIDTPGHESFTNLRSRGSSLCDIAILVVDLMHGLEPQTIESLNLLRSKRTPFVIALNKV 462
+RLE+EKA E RT D LR PIV IMGHVDTGKTKLLDKIR+T+VQEGEAGGITQQIGAT+F K+TL + +LNET K ++ LPGMLVIDTPGHESFTNLRSRGSSLCD+AILVVDLMHGLE QTIESL +LR + TPFV+ALNK+
Sbjct: 382 RRLEQEKANLEARTRDDLRCPIVVIMGHVDTGKTKLLDKIRKTNVQEGEAGGITQQIGATYFEKKTLLTQTEKLNETEKFNLTLPGMLVIDTPGHESFTNLRSRGSSLCDVAILVVDLMHGLEQQTIESLTMLRKRGTPFVVALNKI 528 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10673.912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10673.912.1 >prot_S-firma_F_contig10673.912.1 ID=prot_S-firma_F_contig10673.912.1|Name=mRNA_S-firma_F_contig10673.912.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=154bp SQDEARRKRLEREKAARENRTEDSLRSPIVCIMGHVDTGKTKLLDKIRQTback to top mRNA from alignment at S-firma_F_contig10673:667..2001- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10673.912.1 ID=mRNA_S-firma_F_contig10673.912.1|Name=mRNA_S-firma_F_contig10673.912.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1335bp|location=Sequence derived from alignment at S-firma_F_contig10673:667..2001- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10673:667..2001- >mRNA_S-firma_F_contig10673.912.1 ID=mRNA_S-firma_F_contig10673.912.1|Name=mRNA_S-firma_F_contig10673.912.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=924bp|location=Sequence derived from alignment at S-firma_F_contig10673:667..2001- (Sphaerotrichia firma ET2_F female)back to top |