mRNA_S-firma_F_contig10655.886.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10655.886.1 vs. uniprot
Match: A0A6H5L846_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L846_9PHAE) HSP 1 Score: 127 bits (320), Expect = 2.210e-29 Identity = 61/101 (60.40%), Postives = 76/101 (75.25%), Query Frame = 2
Query: 569 GMQKALALLRNLQGPNYPYPHLVVVKKIQAEGRSSLRSRLRGMFVMDMTLHFLCSFDKIEVPCGHGGNGYRLRTTRGWVKKIAPALQVTAVIAKVALRAVA 871
G+Q++L L+NLQGPNYPYPHLVVVK+I+ +G L ++ RG+ + DMTLHFL D +VPCG G GYR R TRGWVKK++P LQV V AKVAL+A A
Sbjct: 714 GIQESLMCLKNLQGPNYPYPHLVVVKEIETQGNRGLLTKARGIAMKDMTLHFLFPVDMSKVPCGVDGEGYRFRETRGWVKKLSPVLQVAVVTAKVALKATA 814
BLAST of mRNA_S-firma_F_contig10655.886.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 117 bits (294), Expect = 6.610e-26 Identity = 66/106 (62.26%), Postives = 71/106 (66.98%), Query Frame = 2
Query: 575 QKALALLRNLQGPNYPYPHLVVVKKIQAEGRSS--------LRSRLRGMFVMDMTLHFLCSFDKIEVPCGHGGNGYRLRTTRGWVKKIAPALQVTAVIAKVALRAV 868
Q++L L+NLQ PNY YP LVVVKK GRSS L S+LRGM DMTLHFLC D EVPCG GG GYR R R WVKKI+P LQVT V AKVAL AV
Sbjct: 1081 QESLMRLKNLQAPNYLYPRLVVVKKDGNGGRSSRATGWKRCLPSKLRGMGKKDMTLHFLCPVDMTEVPCGPGGEGYRFREMRDWVKKISPVLQVTLVTAKVALNAV 1186
BLAST of mRNA_S-firma_F_contig10655.886.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI) HSP 1 Score: 112 bits (279), Expect = 6.310e-24 Identity = 58/104 (55.77%), Postives = 71/104 (68.27%), Query Frame = 2
Query: 575 QKALALLRNLQGPNYPYPHLVVVKKI-------QAEGRSSLRSRLRGMFVMDMTLHFLCSFDKIEVPCGHGGNGYRLRTTRGWVKKIAPALQVTAVIAKVALRA 865
Q++L LR+LQ PNY YP LVVVK++ +A GR S+ S+L G+ DMTL FLC D +VPCG+GG GYR + TR WVKKI+P LQV V AKVAL A
Sbjct: 1091 QESLMRLRDLQAPNYRYPRLVVVKEVGSDGTASKARGRKSMLSKLCGVGKKDMTLQFLCPVDMTQVPCGYGGEGYRFKETRSWVKKISPVLQVAVVTAKVALNA 1194
BLAST of mRNA_S-firma_F_contig10655.886.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI) HSP 1 Score: 110 bits (276), Expect = 1.550e-23 Identity = 57/109 (52.29%), Postives = 71/109 (65.14%), Query Frame = 2
Query: 566 RGMQKALALLRNLQGPNYPYPHLVVVKKI-------QAEGRSSLRSRLRGMFVMDMTLHFLCSFDKIEVPCGHGGNGYRLRTTRGWVKKIAPALQVTAVIAKVALRAVA 871
+ Q+ L L+NLQ PNY YP LV V+++ +A G + S+LRG+ +M LHFLC D +VPCG+GG GYR R TRGWVKKI+P LQV V AKVAL A A
Sbjct: 1021 KNTQEILMRLKNLQAPNYLYPRLVAVEEVASGSTPSRAHGMKRVLSKLRGVGKKEMVLHFLCPVDMTKVPCGYGGEGYRFRETRGWVKKISPVLQVAVVTAKVALNATA 1129
BLAST of mRNA_S-firma_F_contig10655.886.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 105 bits (263), Expect = 7.830e-22 Identity = 53/104 (50.96%), Postives = 70/104 (67.31%), Query Frame = 2
Query: 575 QKALALLRNLQGPNYPYPHLVVVKKI-------QAEGRSSLRSRLRGMFVMDMTLHFLCSFDKIEVPCGHGGNGYRLRTTRGWVKKIAPALQVTAVIAKVALRA 865
Q++L L+NLQ NYPYP LV V++I +A G + + ++LRG+ +M LHFLC D +VPCG+GG GYR R R WVKK++P LQV V AKVAL+A
Sbjct: 917 QESLMRLKNLQAANYPYPRLVAVEEIASGGTPSKAHGINRVLNKLRGVGTKEMVLHFLCPVDMTKVPCGYGGEGYRFREARRWVKKLSPVLQVAVVTAKVALKA 1020
BLAST of mRNA_S-firma_F_contig10655.886.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE) HSP 1 Score: 100 bits (249), Expect = 5.210e-20 Identity = 50/97 (51.55%), Postives = 62/97 (63.92%), Query Frame = 2
Query: 563 ARGMQKALALLRNLQGPNYPYPHLVVVKKIQAEGRSSLR-------SRLRGMFVMDMTLHFLCSFDKIEVPCGHGGNGYRLRTTRGWVKKIAPALQV 832
A ++L L NL PNY YP LVVVK++ + G SS ++RG+ DMTLHFLC D VPCG+GG GYR++ TRGWVKKI+P LQV
Sbjct: 884 AESTHESLMRLENLLDPNYRYPRLVVVKEVGSNGTSSNAHGVKRWLGKIRGVGKKDMTLHFLCPVDMTTVPCGYGGEGYRIQETRGWVKKISPVLQV 980
BLAST of mRNA_S-firma_F_contig10655.886.1 vs. uniprot
Match: A0A6H5KJH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH8_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 4.700e-12 Identity = 40/82 (48.78%), Postives = 48/82 (58.54%), Query Frame = 2
Query: 611 PNYPYPHLVVV--------KKIQAEGRSSLRSRLRGMFVMDMTLHFLCSFDKIEVPCGHGGNGYRLRTTRGWVKKIAPALQV 832
P YP LVVV K A G + S+L G+ +M LH LC D +VPCG+GG GYR R TRGWVKKI+P LQ+
Sbjct: 19 PRVVYPRLVVVVEQVASGSKPSGAHGMKRVLSKL-GVGEKEMVLHSLCPVDMTKVPCGYGGEGYRFRETRGWVKKISPLLQL 99
BLAST of mRNA_S-firma_F_contig10655.886.1 vs. uniprot
Match: A0A6H5JZH9_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH9_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 7.990e-12 Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 2
Query: 569 GMQKALALLRNLQGPNYPYPHLVVVKKI-------QAEGRSSLRSRLRGMFVMDMTLHFLCSFDKIEVPCGHGGNGYRL 784
G Q++L L+NLQ PNY YPHLVVVK++ ++ G+ S+ S+LRG DM LHFLC D PC GG+ RL
Sbjct: 360 GTQESLMRLKNLQAPNYRYPHLVVVKEVGSDGTASESHGKKSMLSKLRGFGKKDMRLHFLCPVDMTTAPCCPGGSDNRL 438 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10655.886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10655.886.1 >prot_S-firma_F_contig10655.886.1 ID=prot_S-firma_F_contig10655.886.1|Name=mRNA_S-firma_F_contig10655.886.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=285bp MGCRMNHDHDGEKMYHLATSNEEENRSPGSEIVPTTRNLPWHEGTKQRNMback to top mRNA from alignment at S-firma_F_contig10655:1663..3578+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10655.886.1 ID=mRNA_S-firma_F_contig10655.886.1|Name=mRNA_S-firma_F_contig10655.886.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1916bp|location=Sequence derived from alignment at S-firma_F_contig10655:1663..3578+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10655:1663..3578+ >mRNA_S-firma_F_contig10655.886.1 ID=mRNA_S-firma_F_contig10655.886.1|Name=mRNA_S-firma_F_contig10655.886.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1710bp|location=Sequence derived from alignment at S-firma_F_contig10655:1663..3578+ (Sphaerotrichia firma ET2_F female)back to top |