mRNA_S-firma_F_contig10655.885.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10655.885.1
Unique NamemRNA_S-firma_F_contig10655.885.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10655.885.1 vs. uniprot
Match: A0A6H5L846_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L846_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.610e-6
Identity = 31/87 (35.63%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:    4 LPSYLPSRAFSGTVISHDVFVVLDVMWLAGVLKPILDHRGVTKNEMGYKV--FADRVLGTSELLGWA--GELVGRGVLRKGFARLLW 252
            L   L  R F G+++ H++FV LDV+WLA VLKP+L+H+         K+    D  +   + L  A  G L G G+L    A+ +W
Sbjct:  429 LEGALSIREFDGSLVRHEMFVFLDVVWLARVLKPLLNHKDEESYNGSVKLGDTGDTCITLRDPLDIASWGRLKGEGILEPRLAQAMW 515
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BLAST of mRNA_S-firma_F_contig10655.885.1 vs. uniprot
Match: A0A6H5KHN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN7_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.050e-5
Identity = 33/89 (37.08%), Postives = 46/89 (51.69%), Query Frame = 1 
Query:    4 LPSYLPSRAFSGTVISHDVFVVLDVMWLAGVLKPILDHRGVTKNEMGYKV--FADRVLGTSE---LLGWAGELVGRGVLRKGFARLLWS 255
            L   L  R F G+V+ H+ FV LDV+WLA +LKP+L+H+     E   K+    D  L   +   ++ W   L   GVL    AR +WS
Sbjct:   58 LEGALSIREFDGSVVRHETFVFLDVVWLAKILKPLLNHKDEETFEGLVKLGGTGDMCLTLEDPLDIISWF-RLKREGVLEPRLARTMWS 145
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BLAST of mRNA_S-firma_F_contig10655.885.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.190e-5
Identity = 34/89 (38.20%), Postives = 46/89 (51.69%), Query Frame = 1 
Query:    4 LPSYLPSRAFSGTVISHDVFVVLDVMWLAGVLKPILDHRGVTKNEMGYKVFAD----RVL--GTSELLGWAGELVGRGVLRKGFARLLW 252
            L   L  R F G+++ H+ FV LDV+WLA +LKP+L+H+     + G     D    RV     S++  W G L   GVL    AR LW
Sbjct:  651 LEGALAIREFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFD-GLVNLGDTGDTRVTLEDPSDIASW-GRLKNEGVLEPRLARKLW 737
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BLAST of mRNA_S-firma_F_contig10655.885.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.620e-5
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 1 
Query:    4 LPSYLPSRAFSGTVISHDVFVVLDVMWLAGVLKPILDHRG-------VTKNEMG-YKVFADRVLGTSELLGWAGELVGRGVLRKGFARLLW 252
            L   L  R F G+++ H++FV LDV+WLA +LKP+L+H+        V   + G  +V  +  L   ++  W G L  +GVL    AR +W
Sbjct:  551 LEGALSIREFDGSLVRHEMFVFLDVVWLARILKPLLNHKDEETFDGLVNLGDTGDTRVTLEDPL---DIASW-GRLKNQGVLEPRLARTMW 637
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BLAST of mRNA_S-firma_F_contig10655.885.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 5.640e-5
Identity = 33/95 (34.74%), Postives = 47/95 (49.47%), Query Frame = 1 
Query:    4 LPSYLPSRAFSGTVISHDVFVVLDVMWLAGVLKPILDHRGVTKNEMGYKVFADRV-LG-----------TSELLGWAGELVGRGVLRKGFARLLW 252
            L   L  R F G+++ H+ FV LDV+WLA +LKP+L+H+         + F  RV LG           +S++  W G L   GVL    A  +W
Sbjct:  437 LEGALSIREFDGSLVRHEKFVFLDVVWLARILKPLLNHKD-------QRTFDGRVNLGDTGDARITLDDSSDIASW-GRLKNEGVLEPRLAYAMW 523
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10655.885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L846_9PHAE4.610e-635.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHN7_9PHAE1.050e-537.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUD0_ECTSI1.190e-538.20LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUC9_ECTSI1.620e-535.16LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FZA1_ECTSI5.640e-534.74LRR-GTPase of the ROCO family, incomplete sequence... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10655contigS-firma_F_contig10655:486..1084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FL98
PFAMsLRRNT_2,LRR_1,LRR_6,LRR_8,Roc
Max annot lvl2759|Eukaryota
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Evalue1.43e-06
EggNOG OGs2CYK8@1|root,2S4YE@2759|Eukaryota
EC3.2.1.21
CAZyGH1
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.503382-CDS-S-firma_F_contig10655:485..6351622815604.503382-CDS-S-firma_F_contig10655:485..635Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10655 486..635 +
1696949448.2154882-CDS-S-firma_F_contig10655:485..6351696949448.2154882-CDS-S-firma_F_contig10655:485..635Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10655 486..635 +
1622815604.518139-CDS-S-firma_F_contig10655:958..10841622815604.518139-CDS-S-firma_F_contig10655:958..1084Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10655 959..1084 +
1696949448.2366936-CDS-S-firma_F_contig10655:958..10841696949448.2366936-CDS-S-firma_F_contig10655:958..1084Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10655 959..1084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10655.885.1prot_S-firma_F_contig10655.885.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10655 486..1084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10655.885.1

>prot_S-firma_F_contig10655.885.1 ID=prot_S-firma_F_contig10655.885.1|Name=mRNA_S-firma_F_contig10655.885.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=92bp
MLPSYLPSRAFSGTVISHDVFVVLDVMWLAGVLKPILDHRGVTKNEMGYK
VFADRVLGTSELLGWAGELVGRGVLRKGFARLLWSLREQDAE
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mRNA from alignment at S-firma_F_contig10655:486..1084+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10655.885.1 ID=mRNA_S-firma_F_contig10655.885.1|Name=mRNA_S-firma_F_contig10655.885.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=599bp|location=Sequence derived from alignment at S-firma_F_contig10655:486..1084+ (Sphaerotrichia firma ET2_F female)
ATGCTTCCTTCGTACCTGCCCTCCAGGGCATTCAGCGGTACGGTGATCAG
CCATGATGTGTTCGTGGTGCTGGATGTCATGTGGCTGGCGGGTGTGCTCA
AACCCATCCTGGATCACCGAGGTGTTACCAAGAACGAGATGGGATACAAG
GTGAGACAGGGCGAGCGGCCGTTGTTGCAGGTTCGCTGTAGTTGCTGCCA
CAGTACAGGGAGGCCCACATCTCGACCCGGAATTCTTCACACGCCTGGTG
TACCGGTACGAAGCAGCGCCGCCAGGATCTGTGTTGAATGGCGAGCACGA
ATCCATGAAGAGGCGATCGTGACATGCTGGCGAAAGGAAGGTGCAGCTCG
AACCGCCACCGTCGTCCCGGTGTTGCGTTGCCAGGTCGGTCCGTTGCCAG
GTCTATTTTGTAAGTCGACGGCATCCAAACAAGCAGGAGTTTCTCCCGTT
CTCTGCCCCCGCCGATGTCCCAGGTATTTGCGGACAGAGTATTAGGTACA
AGTGAGCTGCTTGGCTGGGCGGGTGAACTGGTGGGCAGGGGTGTGCTCCG
GAAAGGCTTCGCCCGCTTGCTGTGGAGCCTGCGTGAACAGGACGCGGAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10655:486..1084+

>mRNA_S-firma_F_contig10655.885.1 ID=mRNA_S-firma_F_contig10655.885.1|Name=mRNA_S-firma_F_contig10655.885.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=552bp|location=Sequence derived from alignment at S-firma_F_contig10655:486..1084+ (Sphaerotrichia firma ET2_F female)
ATGCTTCCTTCGTACCTGCCCTCCAGGGCATTCAGCGGTACGGTGATCAG
CCATGATGTGTTCGTGGTGCTGGATGTCATGTGGCTGGCGGGTGTGCTCA
AACCCATCCTGGATCACCGAGGTGTTACCAAGAACGAGATGGGATACAAG
ATGCTTCCTTCGTACCTGCCCTCCAGGGCATTCAGCGGTACGGTGATCAG
CCATGATGTGTTCGTGGTGCTGGATGTCATGTGGCTGGCGGGTGTGCTCA
AACCCATCCTGGATCACCGAGGTGTTACCAAGAACGAGATGGGATACAAG
GTATTTGCGGACAGAGTATTAGGTACAAGTGAGCTGCTTGGCTGGGCGGG
TGAACTGGTGGGCAGGGGTGTGCTCCGGAAAGGCTTCGCCCGCTTGCTGT
GGAGCCTGCGTGAACAGGACGCGGAGGTATTTGCGGACAGAGTATTAGGT
ACAAGTGAGCTGCTTGGCTGGGCGGGTGAACTGGTGGGCAGGGGTGTGCT
CCGGAAAGGCTTCGCCCGCTTGCTGTGGAGCCTGCGTGAACAGGACGCGG
AG
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