prot_S-firma_F_contig10655.885.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10655.885.1
Unique Nameprot_S-firma_F_contig10655.885.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length92
Homology
BLAST of mRNA_S-firma_F_contig10655.885.1 vs. uniprot
Match: A0A6H5L846_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L846_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.610e-6
Identity = 31/87 (35.63%), Postives = 46/87 (52.87%), Query Frame = 0
Query:    2 LPSYLPSRAFSGTVISHDVFVVLDVMWLAGVLKPILDHRGVTKNEMGYKV--FADRVLGTSELLGWA--GELVGRGVLRKGFARLLW 84
            L   L  R F G+++ H++FV LDV+WLA VLKP+L+H+         K+    D  +   + L  A  G L G G+L    A+ +W
Sbjct:  429 LEGALSIREFDGSLVRHEMFVFLDVVWLARVLKPLLNHKDEESYNGSVKLGDTGDTCITLRDPLDIASWGRLKGEGILEPRLAQAMW 515          
BLAST of mRNA_S-firma_F_contig10655.885.1 vs. uniprot
Match: A0A6H5KHN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN7_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.050e-5
Identity = 33/89 (37.08%), Postives = 46/89 (51.69%), Query Frame = 0
Query:    2 LPSYLPSRAFSGTVISHDVFVVLDVMWLAGVLKPILDHRGVTKNEMGYKV--FADRVLGTSE---LLGWAGELVGRGVLRKGFARLLWS 85
            L   L  R F G+V+ H+ FV LDV+WLA +LKP+L+H+     E   K+    D  L   +   ++ W   L   GVL    AR +WS
Sbjct:   58 LEGALSIREFDGSVVRHETFVFLDVVWLAKILKPLLNHKDEETFEGLVKLGGTGDMCLTLEDPLDIISWF-RLKREGVLEPRLARTMWS 145          
BLAST of mRNA_S-firma_F_contig10655.885.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.190e-5
Identity = 34/89 (38.20%), Postives = 46/89 (51.69%), Query Frame = 0
Query:    2 LPSYLPSRAFSGTVISHDVFVVLDVMWLAGVLKPILDHRGVTKNEMGYKVFAD----RVL--GTSELLGWAGELVGRGVLRKGFARLLW 84
            L   L  R F G+++ H+ FV LDV+WLA +LKP+L+H+     + G     D    RV     S++  W G L   GVL    AR LW
Sbjct:  651 LEGALAIREFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFD-GLVNLGDTGDTRVTLEDPSDIASW-GRLKNEGVLEPRLARKLW 737          
BLAST of mRNA_S-firma_F_contig10655.885.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.620e-5
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 0
Query:    2 LPSYLPSRAFSGTVISHDVFVVLDVMWLAGVLKPILDHRG-------VTKNEMG-YKVFADRVLGTSELLGWAGELVGRGVLRKGFARLLW 84
            L   L  R F G+++ H++FV LDV+WLA +LKP+L+H+        V   + G  +V  +  L   ++  W G L  +GVL    AR +W
Sbjct:  551 LEGALSIREFDGSLVRHEMFVFLDVVWLARILKPLLNHKDEETFDGLVNLGDTGDTRVTLEDPL---DIASW-GRLKNQGVLEPRLARTMW 637          
BLAST of mRNA_S-firma_F_contig10655.885.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 5.640e-5
Identity = 33/95 (34.74%), Postives = 47/95 (49.47%), Query Frame = 0
Query:    2 LPSYLPSRAFSGTVISHDVFVVLDVMWLAGVLKPILDHRGVTKNEMGYKVFADRV-LG-----------TSELLGWAGELVGRGVLRKGFARLLW 84
            L   L  R F G+++ H+ FV LDV+WLA +LKP+L+H+         + F  RV LG           +S++  W G L   GVL    A  +W
Sbjct:  437 LEGALSIREFDGSLVRHEKFVFLDVVWLARILKPLLNHKD-------QRTFDGRVNLGDTGDARITLDDSSDIASW-GRLKNEGVLEPRLAYAMW 523          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10655.885.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L846_9PHAE4.610e-635.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHN7_9PHAE1.050e-537.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUD0_ECTSI1.190e-538.20LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUC9_ECTSI1.620e-535.16LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FZA1_ECTSI5.640e-534.74LRR-GTPase of the ROCO family, incomplete sequence... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 38..92
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10655contigS-firma_F_contig10655:486..1084 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10655.885.1mRNA_S-firma_F_contig10655.885.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10655 486..1084 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10655.885.1 ID=prot_S-firma_F_contig10655.885.1|Name=mRNA_S-firma_F_contig10655.885.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=92bp
MLPSYLPSRAFSGTVISHDVFVVLDVMWLAGVLKPILDHRGVTKNEMGYK
VFADRVLGTSELLGWAGELVGRGVLRKGFARLLWSLREQDAE
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