mRNA_S-firma_F_contig10616.841.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10616.841.1
Unique NamemRNA_S-firma_F_contig10616.841.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10616.841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10616contigS-firma_F_contig10616:444..891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog28072.Nos7524_3592
PFAMsTPR_1,TPR_11,TPR_2,TPR_8
Max annot lvl1117|Cyanobacteria
Evalue0.000364
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1G20P@1117|Cyanobacteria,1HIQE@1161|Nostocales
DescriptionPFAM Tetratricopeptide repeat
COG categoryK
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.4537802-CDS-S-firma_F_contig10616:443..6321622815600.4537802-CDS-S-firma_F_contig10616:443..632Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10616 444..632 +
1696949445.0818672-CDS-S-firma_F_contig10616:443..6321696949445.0818672-CDS-S-firma_F_contig10616:443..632Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10616 444..632 +
1622815600.4670699-CDS-S-firma_F_contig10616:807..8911622815600.4670699-CDS-S-firma_F_contig10616:807..891Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10616 808..891 +
1696949445.0938094-CDS-S-firma_F_contig10616:807..8911696949445.0938094-CDS-S-firma_F_contig10616:807..891Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10616 808..891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10616.841.1prot_S-firma_F_contig10616.841.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10616 444..891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10616.841.1

>prot_S-firma_F_contig10616.841.1 ID=prot_S-firma_F_contig10616.841.1|Name=mRNA_S-firma_F_contig10616.841.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=91bp
MADPSAMVNVANDLFSAGDFEAALKAYEDALASMPDTPELECNRGAALRN
LGRPEEALVALDKALELNPEFVQAHHNRGLTLHAVGRAEDA
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mRNA from alignment at S-firma_F_contig10616:444..891+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10616.841.1 ID=mRNA_S-firma_F_contig10616.841.1|Name=mRNA_S-firma_F_contig10616.841.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=448bp|location=Sequence derived from alignment at S-firma_F_contig10616:444..891+ (Sphaerotrichia firma ET2_F female)
ATGGCGGATCCGTCGGCTATGGTGAACGTTGCCAACGACCTGTTTTCTGC
CGGCGACTTCGAGGCGGCGTTGAAGGCGTACGAGGACGCGCTTGCGAGCA
TGCCAGACACACCGGAGCTTGAGTGCAACAGGGGAGCAGCCCTGCGGAAC
CTAGGGCGGCCCGAGGAAGCCCTCGTTGCCCTCGACAAGGTGTGGTGTGT
GTTGCGCGTTACGGCCAACCAGCTTACATACACACATGTTTCCTGGCCTA
AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATAGTGTGTGTGTGTGTGTG
ATAGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGCAATTCGCTCAT
GCACACACCCGCAGGCCCTTGAACTCAACCCTGAGTTTGTGCAAGCCCAC
CACAACCGGGGGCTCACCTTGCACGCCGTCGGGCGGGCGGAGGACGCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10616:444..891+

>mRNA_S-firma_F_contig10616.841.1 ID=mRNA_S-firma_F_contig10616.841.1|Name=mRNA_S-firma_F_contig10616.841.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=546bp|location=Sequence derived from alignment at S-firma_F_contig10616:444..891+ (Sphaerotrichia firma ET2_F female)
ATGGCGGATCCGTCGGCTATGGTGAACGTTGCCAACGACCTGTTTTCTGC
CGGCGACTTCGAGGCGGCGTTGAAGGCGTACGAGGACGCGCTTGCGAGCA
TGCCAGACACACCGGAGCTTGAGTGCAACAGGGGAGCAGCCCTGCGGAAC
CTAGGGCGGCCCGAGGAAGCCCTCGTTGCCCTCGACAAGATGGCGGATCC
GTCGGCTATGGTGAACGTTGCCAACGACCTGTTTTCTGCCGGCGACTTCG
AGGCGGCGTTGAAGGCGTACGAGGACGCGCTTGCGAGCATGCCAGACACA
CCGGAGCTTGAGTGCAACAGGGGAGCAGCCCTGCGGAACCTAGGGCGGCC
CGAGGAAGCCCTCGTTGCCCTCGACAAGGCCCTTGAACTCAACCCTGAGT
TTGTGCAAGCCCACCACAACCGGGGGCTCACCTTGCACGCCGTCGGGCGG
GCGGAGGACGCGGCCCTTGAACTCAACCCTGAGTTTGTGCAAGCCCACCA
CAACCGGGGGCTCACCTTGCACGCCGTCGGGCGGGCGGAGGACGCG
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