mRNA_S-firma_F_contig10608.833.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10608.833.1
Unique NamemRNA_S-firma_F_contig10608.833.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10608.833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10608contigS-firma_F_contig10608:1559..1920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.6937914-CDS-S-firma_F_contig10608:1558..17101622815599.6937914-CDS-S-firma_F_contig10608:1558..1710Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10608 1559..1710 -
1696949444.5186496-CDS-S-firma_F_contig10608:1558..17101696949444.5186496-CDS-S-firma_F_contig10608:1558..1710Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10608 1559..1710 -
1622815599.7033277-CDS-S-firma_F_contig10608:1841..19201622815599.7033277-CDS-S-firma_F_contig10608:1841..1920Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10608 1842..1920 -
1696949444.528688-CDS-S-firma_F_contig10608:1841..19201696949444.528688-CDS-S-firma_F_contig10608:1841..1920Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10608 1842..1920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10608.833.1prot_S-firma_F_contig10608.833.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10608 1559..1920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10608.833.1

>prot_S-firma_F_contig10608.833.1 ID=prot_S-firma_F_contig10608.833.1|Name=mRNA_S-firma_F_contig10608.833.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=77bp
LAGHIPQKLGALSKLETLSLWNNKLTGSIPPELGKLTALKKLYLGKNQLS
GKPSSLMRYTSIMCLAADESRPRVGE*
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mRNA from alignment at S-firma_F_contig10608:1559..1920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10608.833.1 ID=mRNA_S-firma_F_contig10608.833.1|Name=mRNA_S-firma_F_contig10608.833.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=362bp|location=Sequence derived from alignment at S-firma_F_contig10608:1559..1920- (Sphaerotrichia firma ET2_F female)
CTTGCAGGCCACATCCCCCAAAAGCTAGGAGCTCTCAGCAAGCTGGAGAC
ACTTTCCCTCTGGAACAACAAGCTAACTGGTGAGTGCTTTACAGTTATAC
TATGCTTTATTTCTAGAACATGTATCCTGCGCACGCGTGGGTGAGTACGA
AATTTCAGAACTCTCGTTCATTTTGTTCCCCCGCTCCATATTCGTCTTGA
TCGTTTTCAGGCTCTATCCCCCCGGAGCTGGGAAAACTCACAGCACTCAA
GAAGCTGTACCTTGGGAAGAACCAGCTGAGCGGTAAGCCATCAAGTTTAA
TGCGGTATACGTCAATTATGTGTCTGGCTGCGGATGAATCCCGCCCACGC
GTGGGTGAGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10608:1559..1920-

>mRNA_S-firma_F_contig10608.833.1 ID=mRNA_S-firma_F_contig10608.833.1|Name=mRNA_S-firma_F_contig10608.833.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=462bp|location=Sequence derived from alignment at S-firma_F_contig10608:1559..1920- (Sphaerotrichia firma ET2_F female)
CTTGCAGGCCACATCCCCCAAAAGCTAGGAGCTCTCAGCAAGCTGGAGAC
ACTTTCCCTCTGGAACAACAAGCTAACTGCTTGCAGGCCACATCCCCCAA
AAGCTAGGAGCTCTCAGCAAGCTGGAGACACTTTCCCTCTGGAACAACAA
GCTAACTGGCTCTATCCCCCCGGAGCTGGGAAAACTCACAGCACTCAAGA
AGCTGTACCTTGGGAAGAACCAGCTGAGCGGTAAGCCATCAAGTTTAATG
CGGTATACGTCAATTATGTGTCTGGCTGCGGATGAATCCCGCCCACGCGT
GGGTGAGTAGGCTCTATCCCCCCGGAGCTGGGAAAACTCACAGCACTCAA
GAAGCTGTACCTTGGGAAGAACCAGCTGAGCGGTAAGCCATCAAGTTTAA
TGCGGTATACGTCAATTATGTGTCTGGCTGCGGATGAATCCCGCCCACGC
GTGGGTGAGTAG
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