mRNA_S-firma_F_contig10586.795.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10586.795.1
Unique NamemRNA_S-firma_F_contig10586.795.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10586.795.1 vs. uniprot
Match: A0A6H5JJP7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJP7_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.010e-31
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 GEGGGPIEKGTMPSYEEEQEKAFFNSELDNAPAAERVKDPVVLITLGWIVGIFLLVVGLILNGVN 195
            GEGGGPIEKGTMPSYEEEQ+KAFFNSELDNAPA E+VKDPVV+ITL WI+G+FLL  GLILNGVN
Sbjct:   78 GEGGGPIEKGTMPSYEEEQDKAFFNSELDNAPATEKVKDPVVIITLAWILGMFLLATGLILNGVN 142
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10586.795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJP7_9PHAE4.010e-3186.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10586contigS-firma_F_contig10586:3719..4996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_000740.1
Exons2
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.4422815-CDS-S-firma_F_contig10586:3718..38411622815595.4422815-CDS-S-firma_F_contig10586:3718..3841Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10586 3719..3841 -
1696949441.5213265-CDS-S-firma_F_contig10586:3718..38411696949441.5213265-CDS-S-firma_F_contig10586:3718..3841Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10586 3719..3841 -
1622815595.457523-CDS-S-firma_F_contig10586:4921..49961622815595.457523-CDS-S-firma_F_contig10586:4921..4996Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10586 4922..4996 -
1696949441.529735-CDS-S-firma_F_contig10586:4921..49961696949441.529735-CDS-S-firma_F_contig10586:4921..4996Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10586 4922..4996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10586.795.1prot_S-firma_F_contig10586.795.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10586 3719..4996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10586.795.1

>prot_S-firma_F_contig10586.795.1 ID=prot_S-firma_F_contig10586.795.1|Name=mRNA_S-firma_F_contig10586.795.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=66bp
GEGGGPIEKGTMPSYEEEQEKAFFNSELDNAPAAERVKDPVVLITLGWIV
GIFLLVVGLILNGVN*
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mRNA from alignment at S-firma_F_contig10586:3719..4996-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10586.795.1 ID=mRNA_S-firma_F_contig10586.795.1|Name=mRNA_S-firma_F_contig10586.795.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1278bp|location=Sequence derived from alignment at S-firma_F_contig10586:3719..4996- (Sphaerotrichia firma ET2_F female)
GGTGAGGGCGGCGGGCCGATCGAGAAAGGGACCATGCCGTCCTACGAGGA
GGAGCAGGAGAAGGCGTTCTTTAACGTGAGTTTTAGGAGCCTTTAGAGAC
TAAAAAGGCCGTGCTGCAGCATTTTTCTGTTGTGCCTGCTGACTCTCTCT
CTCTCTTGACCGTAGCTAGTTTTCCTCTCCTAGCTATACCCGACGCCAGC
GATGTTGTGGCTGGTGGCTTTTCCCTGACCTTAAGCCCGCTGTCTAACCA
ATATCCCGCACGCCACTCCTATACTATTCACCTGGTGGCTCTTTCCTGAC
CTTAAGCCCACTTTCTAACCAATACCCCGCACGCCCTTCCTAAACTATTC
ACCCGGTGACTTTGTCGTGGCCTCAGCCCGCTGTCTAACCAATATCCCGC
ACGCCATTCCTATGCTATCCACCTGGTGGCTTTTTCCTGACCCTAAGCCC
AGTGTTTAACCAATACCCCGCACGCTCTTCCTATAATATCCACCTCGTGG
CTTTGTCTTGGCCTAAGCCCGCTTTCCAAGCGATATCCTATCGCCTGGTG
GCTTCATCATCGCCTTAGCTCCCTCCCAAAGCACTACCGCACACGCCCTT
CCTTTGACATCCTACAATATCACCTTGAGATTGTTTCATTGTCGTAGCTC
GCTCCCCAAGCAAACATCAGTTCCCATCCCATGACATGTCAATTCATAAG
GACTTCCTTTCTATCACCCACGTTTCTGTGTACTTTTCCTGCCTGTTATT
TGAAGTTTTCGGAGTCTTTTGTCTAAGGAGGCAAACCTTGCTGAAATGCC
TCGATGCTCCCGGCTTGCGCCTACCCCGCCTGCCGGGCTGTCATCACAAG
TTTTTGGATTTTTTTTTTTTTTTATCTCAAGGGGTTGTTCGCCCCCTCCT
GTGTGACCCCGGTTGGTCCAGATGGACAGAAAAATACGCTGCAAAGTGTA
GTCCTTTGAGTACACTGTAAAGGGAAGAACACGTCTCGCCTTGACCAGAG
GGACTGTTACCAAAATACCCGTAGATGGGAAGAACACACACACACACACA
CACACAGGGGTTGACCTTCCAACACCTTGCTGCTGTCTTCTTGTCAACCT
GCCTGGCTGCGTGCCTCTGCCTGCCTGCCATCGCCGCATGCTCTCGTCCT
CACAGAGCGAGCTCGACAACGCCCCGGCCGCGGAGCGGGTGAAGGACCCC
GTGGTGCTCATCACCCTCGGCTGGATAGTCGGCATCTTCCTCCTGGTCGT
GGGGCTCATCCTAAACGGCGTCAACTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10586:3719..4996-

>mRNA_S-firma_F_contig10586.795.1 ID=mRNA_S-firma_F_contig10586.795.1|Name=mRNA_S-firma_F_contig10586.795.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=396bp|location=Sequence derived from alignment at S-firma_F_contig10586:3719..4996- (Sphaerotrichia firma ET2_F female)
GGTGAGGGCGGCGGGCCGATCGAGAAAGGGACCATGCCGTCCTACGAGGA
GGAGCAGGAGAAGGCGTTCTTTAACGGTGAGGGCGGCGGGCCGATCGAGA
AAGGGACCATGCCGTCCTACGAGGAGGAGCAGGAGAAGGCGTTCTTTAAC
AGCGAGCTCGACAACGCCCCGGCCGCGGAGCGGGTGAAGGACCCCGTGGT
GCTCATCACCCTCGGCTGGATAGTCGGCATCTTCCTCCTGGTCGTGGGGC
TCATCCTAAACGGCGTCAACTGAAGCGAGCTCGACAACGCCCCGGCCGCG
GAGCGGGTGAAGGACCCCGTGGTGCTCATCACCCTCGGCTGGATAGTCGG
CATCTTCCTCCTGGTCGTGGGGCTCATCCTAAACGGCGTCAACTGA
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