mRNA_S-firma_F_contig10578.785.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A4D9CW50_9STRA (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW50_9STRA) HSP 1 Score: 169 bits (429), Expect = 4.130e-50 Identity = 113/195 (57.95%), Postives = 132/195 (67.69%), Query Frame = 1
Query: 7 SVSKASKMLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPM-APVGAAPAGLAGPVRGVGG--------AMPGMPPMGVP----------GMGM--PPG 528
S+SK+SKMLNY+NYR++VTIQD+RTLVGTFMAFDRHMNLVLGDCEE+R +++KKG+ GG G N + VEE+ EKR+LGLVLLRGENVVSL V+GP P E+ T GPGM RAAGRG+ + APV AP GLAGPVRGVGG A G PP G+P GMGM PPG
Sbjct: 2 SMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGS----------GGSG------PNAI--VEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKAT-PGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTPAAVGFPPRGLPPPXXXXXXXPGMGMAAPPG 177
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A836CGG1_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGG1_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.230e-46 Identity = 94/157 (59.87%), Postives = 112/157 (71.34%), Query Frame = 1
Query: 7 SVSKASKMLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPMAPV-GAAPAGLAGPVRGVGG 474
+++++SKML+YVNYR++VTI DSR L+GTFMAFDRHMN+VLGDCEEHR I+SKKG + A EER EKR LGLVL+RGENVVSL V+GP P E+ GPG+ RAAGRG+P+AP GAAPAGLAGPVRGVGG
Sbjct: 2 AMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAH----------------------AHEEREEKRTLGLVLVRGENVVSLTVEGPPPP-EEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGG 135
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: W7TUE2_9STRA (Small nuclear ribonucleoprotein associated protein b n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUE2_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.450e-46 Identity = 98/157 (62.42%), Postives = 115/157 (73.25%), Query Frame = 1
Query: 1 TQSVSKASKMLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPM-APVGAAPAGLAGPVRGV 468
T S+SK+SKMLNY+NYR++VTIQD+RTLVGTFMAFDRHMNLVLGDCEE+R +++KKG+ GG G VEE+ EKR+LGLVLLRGENVVSL V+GP P E+ T GPGM RAAGRG+ + APV AP GLAGPVRGV
Sbjct: 34 TMSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGS----------GGSGP--------TAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKAT-PGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGV 171
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A0W8DCY8_PHYNI (Kinesin protein 5 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DCY8_PHYNI) HSP 1 Score: 156 bits (395), Expect = 9.840e-46 Identity = 89/160 (55.62%), Postives = 112/160 (70.00%), Query Frame = 1
Query: 10 VSKASKMLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPMAPVGAAPAGLAGPVRGVGGAMPGM 489
++K+SKMLNY+NYR+KVT+QDSR L+G FMAFD+HMNLVLGDCEE R +++K KSA+ EER EKR LGLVLLRGE+VVSL V+GP P+ ++ GPG+ARAAGRG+P AP+GA P GL P+RG+GG+ PGM
Sbjct: 3 MTKSSKMLNYINYRMKVTLQDSRVLIGYFMAFDKHMNLVLGDCEEFRTLKAK--VKSAVS----------------------EERVEKRHLGLVLLRGESVVSLTVEGP-PLAKENETVGPSGPGVARAAGRGIPAAPMGAPPMGLMAPMRGIGGSAPGM 137
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A024GJ47_9STRA (Small nuclear ribonucleoprotein-associated protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GJ47_9STRA) HSP 1 Score: 156 bits (395), Expect = 7.190e-45 Identity = 90/160 (56.25%), Postives = 108/160 (67.50%), Query Frame = 1
Query: 10 VSKASKMLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPMAPVGAAPAGLAGPVRGVGGAMPGM 489
+SK+SKMLNY+NYR+KVT+QDSR LVG FMAFD+HMN+VLGDCEE R ++SK T + EER EKR LGLVLLRGE+VVSL V GP P+ +K GPG+ARAAGRGLP AP+GA P GL P+RG+GG PG+
Sbjct: 3 MSKSSKMLNYINYRMKVTLQDSRALVGYFMAFDKHMNIVLGDCEEFRTLKSKIKTNVS------------------------EERVEKRYLGLVLLRGESVVSLTVDGP-PLAPEKETIGPNGPGIARAAGRGLPAAPLGAPPLGLVAPMRGIGGPAPGV 137
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A812P4U4_9DINO (SNRPB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812P4U4_9DINO) HSP 1 Score: 153 bits (386), Expect = 5.340e-44 Identity = 88/175 (50.29%), Postives = 117/175 (66.86%), Query Frame = 1
Query: 7 SVSKASKMLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPMAPVGAAPAGLAGPVRGVGG--------AMPGMPPMGVP 507
+++K+SK+LNY++YR++VT+ D+RTL+GTF+AFD+HMNLVL D EE R +R+KK +A EERTE+R LGL+LLRG+ VVSLQV+ P ++ + GPG+A+AAGRG+ AP+G APAGLAGPV GVGG AMPGMPP G+P
Sbjct: 2 AMNKSSKLLNYISYRMRVTLADTRTLIGTFLAFDKHMNLVLSDTEEFRIVRNKKSGGTA------------------------EERTERRPLGLILLRGDTVVSLQVEAPPASKGRREDARVVGPGVAKAAGRGISAAPMGMAPAGLAGPVAGVGGSAPVPPHGAMPGMPPRGMP 152
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A2I0AW41_9ASPA (Small nuclear ribonucleoprotein-associated protein n=5 Tax=Orchidaceae TaxID=4747 RepID=A0A2I0AW41_9ASPA) HSP 1 Score: 156 bits (394), Expect = 6.470e-44 Identity = 92/165 (55.76%), Postives = 107/165 (64.85%), Query Frame = 1
Query: 7 SVSKASKMLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQK----GPGMARAAGRGLPMAPVGAAPAGLAGPVRGVGGAMPGM 489
S+SK SKML Y+NYR++VTIQD R LVG FMAFDRHMNLVLGDCEE R + KG+K A GGG EER ++R LGLVLLRGE VVS+ V+GP P E + GPG+ RAAGRG+P AP+ A GLAGP+RGVGG PGM
Sbjct: 2 SMSKGSKMLQYINYRMRVTIQDGRMLVGKFMAFDRHMNLVLGDCEEFRKLPPTKGSKKA--------GGG-----------TAEEREDRRTLGLVLLRGEEVVSMTVEGPPPXDESRAKATAASALAGPGIGRAAGRGIPTAPMVQAQPGLAGPIRGVGGPSPGM 147
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A7S2HQ73_9STRA (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQ73_9STRA) HSP 1 Score: 153 bits (386), Expect = 1.380e-43 Identity = 87/152 (57.24%), Postives = 106/152 (69.74%), Query Frame = 1
Query: 7 SVSKASKMLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPMAPVGAAPAGLAGPVR 462
+++K+SKMLN++NYR++VTIQDSR LVGTFMAFD+HMNLVLGDCEE+R I++KKG V EER EKR LGLVL+RGE VVS+ V+GP P + + GPG+ RAAGRGLP AP+G APAGLAGPVR
Sbjct: 2 AMAKSSKMLNFINYRMRVTIQDSRCLVGTFMAFDKHMNLVLGDCEEYRKIKAKKG------------------------VGVQEEREEKRTLGLVLVRGEMVVSMSVEGPPPP-DNEGKEAPGGPGVGRAAGRGLPAAPLGVAPAGLAGPVR 128
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A4P1RS25_LUPAN (Small nuclear ribonucleoprotein-associated protein n=6 Tax=Lupinus TaxID=3869 RepID=A0A4P1RS25_LUPAN) HSP 1 Score: 155 bits (391), Expect = 1.480e-43 Identity = 98/193 (50.78%), Postives = 116/193 (60.10%), Query Frame = 1
Query: 7 SVSKASKMLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQK----GPGMARAAGRGLPMAPVGAAPAGLAGPVRGVGGAMPGM--------PPMGVPGMGMPPGMP--RPP 543
S+SK+SKML ++NYR++VTIQD R LVG FMAFDRHMNLVLGDCEE R + KG K A EER ++R LGLVLLRGE V+S+ V+GP P E + + GPG+ RAAGRG+P APV A GLAGPVRGVGG PGM P + P + PPG P RPP
Sbjct: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPA------------------------EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVNSAALGGPGLGRAAGRGIPAAPVVQAQPGLAGPVRGVGGPAPGMMQPQISRPPQLSAPPVSYPPGAPVMRPP 170
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: D7G689_ECTSI (Small nuclear ribonucleoprotein-associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G689_ECTSI) HSP 1 Score: 152 bits (385), Expect = 2.250e-43 Identity = 89/156 (57.05%), Postives = 107/156 (68.59%), Query Frame = 1
Query: 7 SVSKASKMLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPMAPVGAAPAGLAGPVRGVGG 474
S+S++SKML YVNYR+++TI D R LVGT MAFDRH+NLVLGDCEE+R + KKG+++A G+ EER EKRVLGLVLLRGENV SL V+GP P + T GPG+ RAAGRG+P PV AP GLAGPVRG+GG
Sbjct: 2 SMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRRFKPKKGSEAAA---------GIH-----------EEREEKRVLGLVLLRGENVQSLTVEGPPPAEDTGKAT-PGGPGVGRAAGRGVPTMPVQGAPRGLAGPVRGIGG 136 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10578.785.1 >prot_S-firma_F_contig10578.785.1 ID=prot_S-firma_F_contig10578.785.1|Name=mRNA_S-firma_F_contig10578.785.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=174bp MLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKback to top mRNA from alignment at S-firma_F_contig10578:13..617+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10578.785.1 ID=mRNA_S-firma_F_contig10578.785.1|Name=mRNA_S-firma_F_contig10578.785.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=605bp|location=Sequence derived from alignment at S-firma_F_contig10578:13..617+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10578:13..617+ >mRNA_S-firma_F_contig10578.785.1 ID=mRNA_S-firma_F_contig10578.785.1|Name=mRNA_S-firma_F_contig10578.785.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1044bp|location=Sequence derived from alignment at S-firma_F_contig10578:13..617+ (Sphaerotrichia firma ET2_F female)back to top |