prot_S-firma_F_contig10578.785.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10578.785.1
Unique Nameprot_S-firma_F_contig10578.785.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length174
Homology
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A4D9CW50_9STRA (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW50_9STRA)

HSP 1 Score: 161 bits (407), Expect = 6.320e-47
Identity = 108/188 (57.45%), Postives = 125/188 (66.49%), Query Frame = 0
Query:    1 MLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPM-APVGAAPAGLAGPVRGVGG--------AMPGMPPMGVP----------GMGM--PPG 167
            MLNY+NYR++VTIQD+RTLVGTFMAFDRHMNLVLGDCEE+R +++KKG+          GG G       N +  VEE+ EKR+LGLVLLRGENVVSL V+GP P  E+   T   GPGM RAAGRG+ + APV  AP GLAGPVRGVGG        A  G PP G+P          GMGM  PPG
Sbjct:    9 MLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGS----------GGSG------PNAI--VEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKAT-PGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTPAAVGFPPRGLPPPXXXXXXXPGMGMAAPPG 177          
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A836CGG1_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGG1_9STRA)

HSP 1 Score: 157 bits (397), Expect = 8.040e-45
Identity = 92/150 (61.33%), Postives = 105/150 (70.00%), Query Frame = 0
Query:    1 MLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPMAPV-GAAPAGLAGPVRGVGG 149
            ML+YVNYR++VTI DSR L+GTFMAFDRHMN+VLGDCEEHR I+SKKG  +                       A EER EKR LGLVL+RGENVVSL V+GP P  E+       GPG+ RAAGRG+P+AP  GAAPAGLAGPVRGVGG
Sbjct:    9 MLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAH----------------------AHEEREEKRTLGLVLVRGENVVSLTVEGPPPP-EEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGG 135          
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A0W8DCY8_PHYNI (Kinesin protein 5 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DCY8_PHYNI)

HSP 1 Score: 150 bits (380), Expect = 1.340e-43
Identity = 86/154 (55.84%), Postives = 106/154 (68.83%), Query Frame = 0
Query:    1 MLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPMAPVGAAPAGLAGPVRGVGGAMPGM 154
            MLNY+NYR+KVT+QDSR L+G FMAFD+HMNLVLGDCEE R +++K   KSA+                       EER EKR LGLVLLRGE+VVSL V+GP P+ ++       GPG+ARAAGRG+P AP+GA P GL  P+RG+GG+ PGM
Sbjct:    9 MLNYINYRMKVTLQDSRVLIGYFMAFDKHMNLVLGDCEEFRTLKAK--VKSAVS----------------------EERVEKRHLGLVLLRGESVVSLTVEGP-PLAKENETVGPSGPGVARAAGRGIPAAPMGAPPMGLMAPMRGIGGSAPGM 137          
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: W7TUE2_9STRA (Small nuclear ribonucleoprotein associated protein b n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUE2_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.070e-42
Identity = 92/148 (62.16%), Postives = 107/148 (72.30%), Query Frame = 0
Query:    1 MLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPM-APVGAAPAGLAGPVRGV 147
            MLNY+NYR++VTIQD+RTLVGTFMAFDRHMNLVLGDCEE+R +++KKG+          GG G            VEE+ EKR+LGLVLLRGENVVSL V+GP P  E+   T   GPGM RAAGRG+ + APV  AP GLAGPVRGV
Sbjct:   43 MLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGS----------GGSGP--------TAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKAT-PGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGV 171          
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A024GJ47_9STRA (Small nuclear ribonucleoprotein-associated protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GJ47_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.710e-42
Identity = 86/154 (55.84%), Postives = 102/154 (66.23%), Query Frame = 0
Query:    1 MLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPMAPVGAAPAGLAGPVRGVGGAMPGM 154
            MLNY+NYR+KVT+QDSR LVG FMAFD+HMN+VLGDCEE R ++SK  T  +                        EER EKR LGLVLLRGE+VVSL V GP P+  +K      GPG+ARAAGRGLP AP+GA P GL  P+RG+GG  PG+
Sbjct:    9 MLNYINYRMKVTLQDSRALVGYFMAFDKHMNIVLGDCEEFRTLKSKIKTNVS------------------------EERVEKRYLGLVLLRGESVVSLTVDGP-PLAPEKETIGPNGPGIARAAGRGLPAAPLGAPPLGLVAPMRGIGGPAPGV 137          
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A196SEW6_BLAHN (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SEW6_BLAHN)

HSP 1 Score: 149 bits (375), Expect = 6.800e-42
Identity = 98/191 (51.31%), Postives = 118/191 (61.78%), Query Frame = 0
Query:    1 MLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPMAPVGAAPAGLAGPVRGVGG---------------------AMP-GMPPMGVPGMGMPPGMP 169
            MLNYVNYR++V I+++RTLVGT MAFD+HMNL+LGDCEE R I+SK                    A  AN V  +EER EK  LGLVLLRGEN++SLQ++GP P  +        GPGM+R AGRG+P AP+ AAP GLAGPVRG+GG                     ++P GMPP   PGM MPPGMP
Sbjct:    9 MLNYVNYRMRVVIKENRTLVGTLMAFDKHMNLILGDCEEFRRIKSKSA------------------AVDANGV--IEEREEKNTLGLVLLRGENIISLQIEGPPP-QDLPTQMAAAGPGMSRIAGRGMPAAPLNAAPQGLAGPVRGLGGPGASLMTGQVIANAPVTGSRASVPMGMPPR--PGM-MPPGMP 175          
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A812P4U4_9DINO (SNRPB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812P4U4_9DINO)

HSP 1 Score: 147 bits (370), Expect = 1.020e-41
Identity = 85/168 (50.60%), Postives = 110/168 (65.48%), Query Frame = 0
Query:    1 MLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPMAPVGAAPAGLAGPVRGVGG--------AMPGMPPMGVP 160
            +LNY++YR++VT+ D+RTL+GTF+AFD+HMNLVL D EE R +R+KK   +A                        EERTE+R LGL+LLRG+ VVSLQV+ P     ++ +    GPG+A+AAGRG+  AP+G APAGLAGPV GVGG        AMPGMPP G+P
Sbjct:    9 LLNYISYRMRVTLADTRTLIGTFLAFDKHMNLVLSDTEEFRIVRNKKSGGTA------------------------EERTERRPLGLILLRGDTVVSLQVEAPPASKGRREDARVVGPGVAKAAGRGISAAPMGMAPAGLAGPVAGVGGSAPVPPHGAMPGMPPRGMP 152          
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: D8M6R0_BLAHO (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M6R0_BLAHO)

HSP 1 Score: 148 bits (373), Expect = 1.700e-41
Identity = 84/149 (56.38%), Postives = 100/149 (67.11%), Query Frame = 0
Query:    1 MLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPMAPVGAAPAGLAGPVRGVGG 149
            MLNYVNYR++V I+++R LVGT MAFD+HMNL+LGDCEE R IRSK G                   A+ N V  +EER EK  LGLVLLRGEN+VSLQ++GP P  +        GPG  R AGRG+P AP+ AAP GLAGPVRG+GG
Sbjct:    1 MLNYVNYRMRVVIRENRVLVGTLMAFDKHMNLILGDCEEFRKIRSKSGV------------------AVVNGV--IEEREEKNTLGLVLLRGENIVSLQIEGPPP-QDLPTQIAAAGPGTVRVAGRGMPAAPLTAAPQGLAGPVRGLGG 128          
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A7S2HQ73_9STRA (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQ73_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.590e-41
Identity = 84/145 (57.93%), Postives = 99/145 (68.28%), Query Frame = 0
Query:    1 MLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPMAPVGAAPAGLAGPVR 145
            MLN++NYR++VTIQDSR LVGTFMAFD+HMNLVLGDCEE+R I++KKG                        V   EER EKR LGLVL+RGE VVS+ V+GP P  + +      GPG+ RAAGRGLP AP+G APAGLAGPVR
Sbjct:    9 MLNFINYRMRVTIQDSRCLVGTFMAFDKHMNLVLGDCEEYRKIKAKKG------------------------VGVQEEREEKRTLGLVLVRGEMVVSMSVEGPPPP-DNEGKEAPGGPGVGRAAGRGLPAAPLGVAPAGLAGPVR 128          
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Match: A0A418AMR8_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AMR8_9STRA)

HSP 1 Score: 144 bits (363), Expect = 5.510e-41
Identity = 84/150 (56.00%), Postives = 101/150 (67.33%), Query Frame = 0
Query:    1 MLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSK-KGTKSALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQVQGPAPVMEKKLNTLQKGPGMARAAGRGLPMAPVGAAPAGLAGPVRGVGG 149
            MLNY+NYR+KVT+ D RTLVGTFMAFD+HMNLVLGDCEE R +++K KG  ++++                      EER +KR+LGLVLLRGENVVSL V+ P P  E +      GPG  RAAGRGLP AP+G  P GLA P+RGVGG
Sbjct:    1 MLNYINYRMKVTLADGRTLVGTFMAFDKHMNLVLGDCEEFRTLKNKLKGAAASVK----------------------EERVQKRMLGLVLLRGENVVSLTVESPPPAHEAE-GLGNMGPGFGRAAGRGLPAAPIGI-PMGLAAPMRGVGG 126          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10578.785.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9CW50_9STRA6.320e-4757.45Small nuclear ribonucleoprotein-associated protein... [more]
A0A836CGG1_9STRA8.040e-4561.33Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A0W8DCY8_PHYNI1.340e-4355.84Kinesin protein 5 n=1 Tax=Phytophthora nicotianae ... [more]
W7TUE2_9STRA1.070e-4262.16Small nuclear ribonucleoprotein associated protein... [more]
A0A024GJ47_9STRA2.710e-4255.84Small nuclear ribonucleoprotein-associated protein... [more]
A0A196SEW6_BLAHN6.800e-4251.31Small nuclear ribonucleoprotein-associated protein... [more]
A0A812P4U4_9DINO1.020e-4150.60SNRPB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
D8M6R0_BLAHO1.700e-4156.38Small nuclear ribonucleoprotein-associated protein... [more]
A0A7S2HQ73_9STRA2.590e-4157.93Small nuclear ribonucleoprotein-associated protein... [more]
A0A418AMR8_9STRA5.510e-4156.00Sm domain-containing protein n=1 Tax=Aphanomyces i... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 1..100
e-value: 2.0E-17
score: 73.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 3..99
e-value: 4.0E-19
score: 68.1
NoneNo IPR availableGENE3D2.30.30.100coord: 1..108
e-value: 4.5E-29
score: 102.0
NoneNo IPR availablePANTHERPTHR10701SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND Ncoord: 1..158
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 77..173
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..55
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..76
NoneNo IPR availableTMHMMTMhelixcoord: 55..77
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 1..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10578contigS-firma_F_contig10578:40..617 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10578.785.1mRNA_S-firma_F_contig10578.785.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10578 13..617 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10578.785.1 ID=prot_S-firma_F_contig10578.785.1|Name=mRNA_S-firma_F_contig10578.785.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=174bp
MLNYVNYRVKVTIQDSRTLVGTFMAFDRHMNLVLGDCEEHRAIRSKKGTK
SALRGLFFWGGGGLWFAALANLVLAVEERTEKRVLGLVLLRGENVVSLQV
QGPAPVMEKKLNTLQKGPGMARAAGRGLPMAPVGAAPAGLAGPVRGVGGA
MPGMPPMGVPGMGMPPGMPRPPM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR001163LSM_dom_euk/arc