mRNA_S-firma_F_contig10506.712.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10506.712.1
Unique NamemRNA_S-firma_F_contig10506.712.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10506.712.1 vs. uniprot
Match: A0A6H5K899_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K899_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 7.290e-40
Identity = 82/178 (46.07%), Postives = 110/178 (61.80%), Query Frame = 2 
Query:  371 VRPRASRAVVASTRDCWPG-GVPVACRTTIADVFGGVVNAVGLLILLFASLSCPAMATIRPHTLQVKTCNSTKAGTVGKVLLSFCDGESS-CEMGPPNVYNARGELKTVGTWNTLKFPLEYEPTTMLMTIWGTDAWCVEALVWDNGENLLGRGGKLFLDGNLGETGCEYGVNIRMGWW 898
            V PR +    AS    W G GV V    T+    G +     LL+LL A  +  A A I+P TL+V+TCN T AG++ +V LSFCDG    C MGP NVYN+  EL  +GTW   + PL +EPT M M++ G DAWC + ++W+ G NLLG GG+++LDG+LG+ GC YGV+   GW+
Sbjct:   84 VMPRTANTASAS----WEGSGVVVRASATVKA--GNL-----LLLLLLAGWTITATAAIQPFTLEVRTCNETNAGSLDEVHLSFCDGGGDDCVMGPENVYNSVAELAEIGTWTPFEIPLAFEPTAMSMSMVGIDAWCFDEVIWNGGTNLLGSGGRVYLDGDLGKKGCNYGVHFDTGWF 250
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BLAST of mRNA_S-firma_F_contig10506.712.1 vs. uniprot
Match: D7G1J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J9_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 6.040e-37
Identity = 70/135 (51.85%), Postives = 94/135 (69.63%), Query Frame = 2 
Query:  497 LILLFASLSCPAMATIRPHTLQVKTCNSTKAGTVGKVLLSFCDGESS-CEMGPPNVYNARGELKTVGTWNTLKFPLEYEPTTMLMTIWGTDAWCVEALVWDNGENLLGRGGKLFLDGNLGETGCEYGVNIRMGWW 898
            L+LL A  + PA A I+P+TL+V+T N+T AG++ +V LSFCDG    C MGP NVYN+  EL  +GT  T + PL YEPT M ++I G DAWC +  +W+ G NLLG G +++LDG+LGE GC YGV+   GW+
Sbjct:   32 LLLLLAGWTFPATAAIQPYTLEVRTRNATNAGSLDEVHLSFCDGGGDDCVMGPENVYNSMAELAEIGTRATFEIPLAYEPTAMSISIVGIDAWCFDEAIWNGGTNLLGSGARVYLDGDLGEKGCNYGVHFDTGWF 166
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10506.712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K899_9PHAE7.290e-4046.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J9_ECTSI6.040e-3751.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10506contigS-firma_F_contig10506:403..2806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons5
Model size1110
Cds size771
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10506.712.1prot_S-firma_F_contig10506.712.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10506 740..2806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.594444-UTR-S-firma_F_contig10506:402..7391622815586.594444-UTR-S-firma_F_contig10506:402..739Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10506 403..739 +
1696949435.8222363-UTR-S-firma_F_contig10506:402..7391696949435.8222363-UTR-S-firma_F_contig10506:402..739Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10506 403..739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.606585-CDS-S-firma_F_contig10506:739..9321622815586.606585-CDS-S-firma_F_contig10506:739..932Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10506 740..932 +
1696949435.8428006-CDS-S-firma_F_contig10506:739..9321696949435.8428006-CDS-S-firma_F_contig10506:739..932Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10506 740..932 +
1622815586.6183941-CDS-S-firma_F_contig10506:1346..15871622815586.6183941-CDS-S-firma_F_contig10506:1346..1587Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10506 1347..1587 +
1696949435.854348-CDS-S-firma_F_contig10506:1346..15871696949435.854348-CDS-S-firma_F_contig10506:1346..1587Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10506 1347..1587 +
1622815586.6296985-CDS-S-firma_F_contig10506:1871..21221622815586.6296985-CDS-S-firma_F_contig10506:1871..2122Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10506 1872..2122 +
1696949435.8810523-CDS-S-firma_F_contig10506:1871..21221696949435.8810523-CDS-S-firma_F_contig10506:1871..2122Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10506 1872..2122 +
1622815586.6414037-CDS-S-firma_F_contig10506:2427..24771622815586.6414037-CDS-S-firma_F_contig10506:2427..2477Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10506 2428..2477 +
1696949435.891282-CDS-S-firma_F_contig10506:2427..24771696949435.891282-CDS-S-firma_F_contig10506:2427..2477Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10506 2428..2477 +
1622815586.6547098-CDS-S-firma_F_contig10506:2770..28061622815586.6547098-CDS-S-firma_F_contig10506:2770..2806Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10506 2771..2806 +
1696949435.8993359-CDS-S-firma_F_contig10506:2770..28061696949435.8993359-CDS-S-firma_F_contig10506:2770..2806Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10506 2771..2806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10506.712.1

>prot_S-firma_F_contig10506.712.1 ID=prot_S-firma_F_contig10506.712.1|Name=mRNA_S-firma_F_contig10506.712.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=257bp
MKRRPKTAKRTVRPRASRAVVASTRDCWPGGVPVACRTTIADVFGGVVNA
VGLLILLFASLSCPAMATIRPHTLQVKTCNSTKAGTVGKVLLSFCDGESS
CEMGPPNVYNARGELKTVGTWNTLKFPLEYEPTTMLMTIWGTDAWCVEAL
VWDNGENLLGRGGKLFLDGNLGETGCEYGVNIRMGWWVIESPPVLRCSTS
SASTKLPHVCLAVRSTPDRASSEDRQLPSSTPVRAAGDFSTYRDQTTTRT
RLPQKLA
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mRNA from alignment at S-firma_F_contig10506:403..2806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10506.712.1 ID=mRNA_S-firma_F_contig10506.712.1|Name=mRNA_S-firma_F_contig10506.712.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2404bp|location=Sequence derived from alignment at S-firma_F_contig10506:403..2806+ (Sphaerotrichia firma ET2_F female)
CTTCCGTGGGTCTTCACCGGATTGTTTTCCCGTGCTTCATCGTAATATAT
TTCGATCGGAAAAGTAGCAGCGTGGATATCTAAATGATAGCACCACGGTT
GACCCGCGTGCACAGCAACCCTGAACATCGAGGGTGACATGCTCGTTATG
ATTCGAAGCCACGTAGGAATAAGACAAGGTCAATACGTGGGAGGAACCGG
AGCGAAGAGAGCCGCCCAAACTTCGCATCACCCACAAGCCATTAATTCGA
GGCGTATCCAGCAGGCGCATCATTCCCGCTGACACTTCGCCCTGGCAACA
TTTCGTTTTTCGACAATATCCGATCCGTGGAAATCAGATGAAAAGACGAC
CGAAAACGGCCAAGCGCACGGTTCGACCAAGAGCGTCGAGAGCTGTTGTG
GCCTCGACCCGCGACTGCTGGCCTGGTGGCGTCCCCGTGGCTTGCCGTAC
AACCATCGCCGACGTGTTTGGCGGCGTCGTCAATGCCGTGGGCCTTCTCA
TCCTCCTGTTCGCTTCGCTCTCGTGCCCTGGTGAGTTCTGCTGACGCTAC
CTTGTGGAAAAAGTGTAACGATGCCCCGACACTCCGGGAGGGAAACTGTC
CAACAGCACATTGGCCCCCGTCGGCTTAGTGCTTGCTTGCCTAGGCGGAA
CATGGCAGGTACGGCGATGCGTCGGCGACTCACGACATACTTTTAATCGT
GGTCGTTGACGGTCCAGGAGCCCTCGTGCCCGGCCCCATCTGCTGCAGCG
CTATCCTGGGGTTGACCAATAAACCGACTACAGCTGAAAACCTTTGCCCC
ACCGCACCTAACTCCAAGCTCCCAGCGCAATTAAATAGAAACGCGGCGGG
GGAGCTGGTGTGTACTTCTTTCACGTCCTCTATTCTTTATGATGTATGGC
GCACATCCAACAACGTGCCGAATATCTGTTTTTGTTTTGTGCAGCGATGG
CCACGATACGACCCCACACATTGCAAGTCAAGACCTGCAACAGTACGAAA
GCAGGAACGGTGGGCAAAGTCCTCCTGTCTTTTTGCGACGGGGAAAGCTC
CTGCGAAATGGGGCCGCCCAACGTTTACAACGCCCGAGGCGAGCTGAAAA
CCGTCGGGACATGGAACACCCTCAAATTCCCGCTGGAGTATGAGCCCACC
ACCATGTTAATGACCATTTGGGGAACCGACGCCTGGTGAGCGGGGGGCAG
TTCCAGTTCGTTCTCCGGCAACGTGGTTGCTGCCGATTCCACCCTCATTT
CGCAGCGCTTTTCGCGCAGACCGGGATGTTGTGTGTAGTATCGAATGACA
TGGCGCGATTTCTTACCAGAAAACCAGCCGTGCTGTCCAGAGTTCCAACG
AGATAGCGAGACAGAGTTTTAAGAAGAATAACTTCCATTGGGCCAAGATT
GGATCTGAAACGCGGCTAAGGCATGGTTGCTTAAGCTTGTCCATCGCGCT
TGCCTTTTCCTGCTCACAGGTGCGTGGAAGCTTTGGTTTGGGACAACGGA
GAGAACTTGCTCGGCAGAGGGGGGAAGCTCTTCTTGGACGGAAACCTAGG
GGAAACGGGCTGCGAATATGGCGTGAACATCCGGATGGGGTGGTGGGTAA
TCGAGTCGCCGCCAGTCCTGCGTTGTTCGACGAGCTCGGCGAGCACAAAG
CTCCCTCATGTGTGCCTCGCGGTGCGATCAACACCTGATCGTGCCAGCTC
GGAGGATCGGCAGCTTCCAAGTTAGTTACCGGTTCAACGTTATTCTCCGC
CCCTCCTCTAGTGCCCCCGCCCCCTCCCATGAACCCCAAACACGGGATAA
AGCCTCGAGCGAAAACAATTGCTTCCGGGCTAGGACCGCGTGGGGAAACG
CACGGCTGCCAAGCGTTTTGAAGTTCCGACTCTGGTAGCTTCGCTCCACT
TCCCGTGGACTGCTCGTCGACGGTTGCGACGTGCTCTCGCCATCAAGTCT
AATCTCGACTTTATTTTTTTGTCTTGCAAGCCCAGCCAGAACTGAACATC
TCCTTCTGATCGGCTGTCCAACCAGGTTCTACCCCTGTCAGAGCAGCTGG
CGATTTTTCAACTTACCGGGATCAGGTGAGTTGAGAAAGAGAGAACAAGA
GACAAGGTATGGTGGTTGGAGACGACCAGCATGAGGACTTTTGATAGGAC
GAAATGAAACAGAGAGTGTGCGAGAGTCGTCCAAGATGTTTGGATTGTGG
ATGCCGGCCAAAGCTACGTGTAAAAAGTGCGGCATCTAGTCTCTATTTCG
ACTTCACCACCACCCGCATCAGATTCCGCGCGGCAACTGTTGGCAGTGAA
CAAACTTCGTGGATGCTCAACTTTCGTTTGGACCAACATAGAAACCCCAT
TTCACTTTCCCCCGACAGACGACTACACGTACGAGGTTGCCACAAAAGCT
TGCA
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Coding sequence (CDS) from alignment at S-firma_F_contig10506:403..2806+

>mRNA_S-firma_F_contig10506.712.1 ID=mRNA_S-firma_F_contig10506.712.1|Name=mRNA_S-firma_F_contig10506.712.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1542bp|location=Sequence derived from alignment at S-firma_F_contig10506:403..2806+ (Sphaerotrichia firma ET2_F female)
ATGAAAAGACGACCGAAAACGGCCAAGCGCACGGTTCGACCAAGAGCGTC
GAGAGCTGTTGTGGCCTCGACCCGCGACTGCTGGCCTGGTGGCGTCCCCG
TGGCTTGCCGTACAACCATCGCCGACGTGTTTGGCGGCGTCGTCAATGCC
GTGGGCCTTCTCATCCTCCTGTTCGCTTCGCTCTCGTGCCCTGATGAAAA
GACGACCGAAAACGGCCAAGCGCACGGTTCGACCAAGAGCGTCGAGAGCT
GTTGTGGCCTCGACCCGCGACTGCTGGCCTGGTGGCGTCCCCGTGGCTTG
CCGTACAACCATCGCCGACGTGTTTGGCGGCGTCGTCAATGCCGTGGGCC
TTCTCATCCTCCTGTTCGCTTCGCTCTCGTGCCCTGCGATGGCCACGATA
CGACCCCACACATTGCAAGTCAAGACCTGCAACAGTACGAAAGCAGGAAC
GGTGGGCAAAGTCCTCCTGTCTTTTTGCGACGGGGAAAGCTCCTGCGAAA
TGGGGCCGCCCAACGTTTACAACGCCCGAGGCGAGCTGAAAACCGTCGGG
ACATGGAACACCCTCAAATTCCCGCTGGAGTATGAGCCCACCACCATGTT
AATGACCATTTGGGGAACCGACGCCTGCGATGGCCACGATACGACCCCAC
ACATTGCAAGTCAAGACCTGCAACAGTACGAAAGCAGGAACGGTGGGCAA
AGTCCTCCTGTCTTTTTGCGACGGGGAAAGCTCCTGCGAAATGGGGCCGC
CCAACGTTTACAACGCCCGAGGCGAGCTGAAAACCGTCGGGACATGGAAC
ACCCTCAAATTCCCGCTGGAGTATGAGCCCACCACCATGTTAATGACCAT
TTGGGGAACCGACGCCTGGTGCGTGGAAGCTTTGGTTTGGGACAACGGAG
AGAACTTGCTCGGCAGAGGGGGGAAGCTCTTCTTGGACGGAAACCTAGGG
GAAACGGGCTGCGAATATGGCGTGAACATCCGGATGGGGTGGTGGGTAAT
CGAGTCGCCGCCAGTCCTGCGTTGTTCGACGAGCTCGGCGAGCACAAAGC
TCCCTCATGTGTGCCTCGCGGTGCGATCAACACCTGATCGTGCCAGCTCG
GAGGATCGGCAGCTTCCAAGTGCGTGGAAGCTTTGGTTTGGGACAACGGA
GAGAACTTGCTCGGCAGAGGGGGGAAGCTCTTCTTGGACGGAAACCTAGG
GGAAACGGGCTGCGAATATGGCGTGAACATCCGGATGGGGTGGTGGGTAA
TCGAGTCGCCGCCAGTCCTGCGTTGTTCGACGAGCTCGGCGAGCACAAAG
CTCCCTCATGTGTGCCTCGCGGTGCGATCAACACCTGATCGTGCCAGCTC
GGAGGATCGGCAGCTTCCAAGTTCTACCCCTGTCAGAGCAGCTGGCGATT
TTTCAACTTACCGGGATCAGGTTCTACCCCTGTCAGAGCAGCTGGCGATT
TTTCAACTTACCGGGATCAGACGACTACACGTACGAGGTTGCCACAAAAG
CTTGCAACGACTACACGTACGAGGTTGCCACAAAAGCTTGCA
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