prot_S-firma_F_contig10506.712.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10506.712.1
Unique Nameprot_S-firma_F_contig10506.712.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length257
Homology
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BLAST of mRNA_S-firma_F_contig10506.712.1 vs. uniprot
Match: A0A6H5K899_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K899_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 4.410e-41
Identity = 82/178 (46.07%), Postives = 110/178 (61.80%), Query Frame = 0 
Query:   12 VRPRASRAVVASTRDCWPG-GVPVACRTTIADVFGGVVNAVGLLILLFASLSCPAMATIRPHTLQVKTCNSTKAGTVGKVLLSFCDGESS-CEMGPPNVYNARGELKTVGTWNTLKFPLEYEPTTMLMTIWGTDAWCVEALVWDNGENLLGRGGKLFLDGNLGETGCEYGVNIRMGWW 187
            V PR +    AS    W G GV V    T+    G +     LL+LL A  +  A A I+P TL+V+TCN T AG++ +V LSFCDG    C MGP NVYN+  EL  +GTW   + PL +EPT M M++ G DAWC + ++W+ G NLLG GG+++LDG+LG+ GC YGV+   GW+
Sbjct:   84 VMPRTANTASAS----WEGSGVVVRASATVKA--GNL-----LLLLLLAGWTITATAAIQPFTLEVRTCNETNAGSLDEVHLSFCDGGGDDCVMGPENVYNSVAELAEIGTWTPFEIPLAFEPTAMSMSMVGIDAWCFDEVIWNGGTNLLGSGGRVYLDGDLGKKGCNYGVHFDTGWF 250
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BLAST of mRNA_S-firma_F_contig10506.712.1 vs. uniprot
Match: D7G1J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J9_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 2.800e-38
Identity = 70/135 (51.85%), Postives = 94/135 (69.63%), Query Frame = 0 
Query:   54 LILLFASLSCPAMATIRPHTLQVKTCNSTKAGTVGKVLLSFCDGESS-CEMGPPNVYNARGELKTVGTWNTLKFPLEYEPTTMLMTIWGTDAWCVEALVWDNGENLLGRGGKLFLDGNLGETGCEYGVNIRMGWW 187
            L+LL A  + PA A I+P+TL+V+T N+T AG++ +V LSFCDG    C MGP NVYN+  EL  +GT  T + PL YEPT M ++I G DAWC +  +W+ G NLLG G +++LDG+LGE GC YGV+   GW+
Sbjct:   32 LLLLLAGWTFPATAAIQPYTLEVRTRNATNAGSLDEVHLSFCDGGGDDCVMGPENVYNSMAELAEIGTRATFEIPLAYEPTAMSISIVGIDAWCFDEAIWNGGTNLLGSGARVYLDGDLGEKGCNYGVHFDTGWF 166
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10506.712.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K899_9PHAE4.410e-4146.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J9_ECTSI2.800e-3851.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 47..67
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..46
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 68..257
NoneNo IPR availableTMHMMTMhelixcoord: 47..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10506contigS-firma_F_contig10506:740..2806 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10506.712.1mRNA_S-firma_F_contig10506.712.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10506 403..2806 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10506.712.1 ID=prot_S-firma_F_contig10506.712.1|Name=mRNA_S-firma_F_contig10506.712.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=257bp
MKRRPKTAKRTVRPRASRAVVASTRDCWPGGVPVACRTTIADVFGGVVNA
VGLLILLFASLSCPAMATIRPHTLQVKTCNSTKAGTVGKVLLSFCDGESS
CEMGPPNVYNARGELKTVGTWNTLKFPLEYEPTTMLMTIWGTDAWCVEAL
VWDNGENLLGRGGKLFLDGNLGETGCEYGVNIRMGWWVIESPPVLRCSTS
SASTKLPHVCLAVRSTPDRASSEDRQLPSSTPVRAAGDFSTYRDQTTTRT
RLPQKLA
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