mRNA_S-firma_F_contig105.701.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig105.701.1
Unique NamemRNA_S-firma_F_contig105.701.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig105.701.1 vs. uniprot
Match: UPI000CED48D2 (probable protein phosphatase 2C 8 isoform X1 n=4 Tax=Morus notabilis TaxID=981085 RepID=UPI000CED48D2)

HSP 1 Score: 67.8 bits (164), Expect = 5.640e-10
Identity = 39/113 (34.51%), Postives = 57/113 (50.44%), Query Frame = 1
Query:  277 VDVMKQALLDGFRSTQEAFAAREARSGKDSGSTAIVAIVCGRHVVIANLGDSGAMF----------HNDQDTLGESFTAKTEFHTVSNESEKKRVEAAGGIFTANGRLFGKLQ 585
            + V K+A+LDGFR T E+     A  G   G+TA+   + G+ V +AN+GD+ A+           HN            T  H      E+ R++ AGGI +ANGRL G+L+
Sbjct:  145 IKVAKRAILDGFRKTDESLLQESAAGGWQDGATAVCVWIVGKTVFVANIGDAKAVVARSSTSEGSQHNPDGATTMKAIVLTREHKAIYPQERARIQKAGGIVSANGRLQGRLE 257          
BLAST of mRNA_S-firma_F_contig105.701.1 vs. uniprot
Match: A0A0J8BC67_BETVV (PPM-type phosphatase domain-containing protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BC67_BETVV)

HSP 1 Score: 61.6 bits (148), Expect = 7.760e-8
Identity = 39/120 (32.50%), Postives = 61/120 (50.83%), Query Frame = 1
Query:  259 GLDDLLVDVM--KQALLDGFRSTQEAFAAREARSGKDSGSTAIVAIVCGRHVVIANLGDSGAMFHNDQDTLGESFT---------AKTEFHTVSNESEKKRVEAAGGIFTANGRLFGKLQ 585
            GL   L+DV   K+A+L+GFR+T EA     A  G   G+TA+   + G+ V +AN+GD+ A+      T+ ++             T  H      E+ R++ AGG  +  GRL G+L+
Sbjct:  132 GLPRELLDVKAAKKAILEGFRTTDEALLVESAAGGWQDGATAVCVWILGQTVFVANIGDAKAVVARSNSTIDQNDADDFSPLRAIVLTREHKAIYPQERARIQKAGGSVSTTGRLQGRLE 251          
BLAST of mRNA_S-firma_F_contig105.701.1 vs. uniprot
Match: UPI000B789632 (probable protein phosphatase 2C 8 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B789632)

HSP 1 Score: 61.6 bits (148), Expect = 7.910e-8
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  259 GLDDLLVDVM--KQALLDGFRSTQEAFAAREARSGKDSGSTAIVAIVCGRHVVIANLGDSGAMF----HNDQDTLGESFTAK----TEFHTVSNESEKKRVEAAGGIFTANGRLFGKLQ 585
            GL   L+DV   K+A+LDGFR+T EA     A  G   G+TA+   V G+ V +AN+GD+ A+       DQ+    S   +    T  H      E+ R++ AGG  +  GRL G+L+
Sbjct:  140 GLSRELLDVKATKKAILDGFRTTDEALLLDSAAGGWQDGATAVCVWVLGQTVFVANIGDAKAVVARSHSGDQNNSNGSSPLRAIVLTREHKAIYPQERARIQKAGGSVSTTGRLQGRLE 258          
BLAST of mRNA_S-firma_F_contig105.701.1 vs. uniprot
Match: A0A5C7IHM1_9ROSI (Protein-serine/threonine phosphatase n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7IHM1_9ROSI)

HSP 1 Score: 61.6 bits (148), Expect = 9.720e-8
Identity = 57/188 (30.32%), Postives = 89/188 (47.34%), Query Frame = 1
Query:   37 LYGAFDGHGGSSCANFVSRNLPQGVKNSPAWAHLAVRDRDNTTTSDHREDAEEKATT----RPENQRVALGGGARGGGGLDDLLVDVMKQALLDGFRSTQEAFAAREARSGKDSGSTAIVAIVCGRHVVIANLGDSGAMFHNDQDTLGESFTAKTEFHTVSNESEKKRVEAAGG-IFTANG-RLFGKL 582
            ++G +DGHGGS  AN+ S  +   +        +   D  + +T + R++  EK  T    + +++   +GG A    G DD           D   +T EA A          GSTA+VA+VC  H+++AN GDS A+    ++ +  S       H  + E E  R+EA+GG +   NG R+FG L
Sbjct:  258 IFGVYDGHGGSQVANYCSERIHFALAEE---IEIIKNDLADGSTKESRQEQWEKTFTSCFLKVDDE---IGGNAGRSVGSDD----------EDASEATFEAVAPETV------GSTAVVALVCSSHIIVANCGDSRAVLCRGKEPMALSID-----HKPNREDEYARIEASGGKVIQWNGHRVFGVL 418          
BLAST of mRNA_S-firma_F_contig105.701.1 vs. uniprot
Match: A0A0K9PC33_ZOSMR (Protein-serine/threonine phosphatase n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PC33_ZOSMR)

HSP 1 Score: 60.1 bits (144), Expect = 2.100e-7
Identity = 32/87 (36.78%), Postives = 49/87 (56.32%), Query Frame = 1
Query:  289 KQALLDGFRSTQEAFAAREARSGKDSGSTAIVAIVCGRHVVIANLGDSGAMFHNDQDTLGESFTAKTEFHTVSNESEKKRVEAAGGI 549
            K A++D +R T       E    KD+GST+  AI+ GR +++AN+GDS A+   D + +     A T  H  +   E++R+EAAGG 
Sbjct:   95 KSAIVDAYRHTDSELLKIECNQSKDAGSTSSTAILMGRRLLVANVGDSRAVISRDGNAI-----AVTRDHKPNQSDERRRIEAAGGF 176          
BLAST of mRNA_S-firma_F_contig105.701.1 vs. uniprot
Match: UPI000B8B7D5E (probable protein phosphatase 2C 8 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8B7D5E)

HSP 1 Score: 57.8 bits (138), Expect = 2.980e-7
Identity = 39/111 (35.14%), Postives = 56/111 (50.45%), Query Frame = 1
Query:  277 VDVMKQALLDGFRSTQEAFAAREARSGKDSGSTAIVAIVCGRHVVIANLGDSGAMFH-----NDQDTLGESFTAK----TEFHTVSNESEKKRVEAAGGIFTANGRLFGKL 582
            V   K+A+LDGFR+T EA     A  G   G+TA+   V G+ V +AN+GD+ A+       +DQ+        K    T  H      E+ R++ AGG  +  GRL G+L
Sbjct:   20 VKAAKKAILDGFRTTDEALLLDSAAGGWHDGATAVCLWVLGQTVFVANIGDAKAVVARFTSTSDQNDSNGFIPLKAIVLTREHKAIYPQERARIQKAGGSVSTTGRLQGRL 130          
BLAST of mRNA_S-firma_F_contig105.701.1 vs. uniprot
Match: UPI0008F9E421 (protein phosphatase 1L-like n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9E421)

HSP 1 Score: 59.3 bits (142), Expect = 5.370e-7
Identity = 55/172 (31.98%), Postives = 82/172 (47.67%), Query Frame = 1
Query:   37 LYGAFDGHGGSSCANFVSRNLPQGVKNSPAWAHLAVRDRDNTTTSDHREDAEEKATTRPENQ-RVALGGGARGGGGLDDLLVDVMKQALLDGFRSTQEAFAAREARSGKDSGSTAIVAIVCGRHVVIANLGDS-GAMFHNDQDTLGESFTAKTEFHTVSNESEKKRVEAAGG 546
             Y  FDGH     AN+   +L   +KN  A     +  R N ++S   +  + + + R     +     G +   G+D       K+ L D F ST +A        G DSG+TAIVA++ G  +++AN+GDS G M  +D   +  SF  K E     +E EK+R+E AGG
Sbjct:   93 FYAVFDGHVSEYAANYAREHL---IKNIVASYKKQIDLRKNFSSSQASKRYKHQGSQRTSRTLKSTKSFGFQTNEGID------YKKLLNDVFLSTDKALCEELIALGTDSGTTAIVAMIQGTRLIVANVGDSRGVMCDSDGFVVPLSFDHKPE-----SEDEKRRIEEAGG 250          
BLAST of mRNA_S-firma_F_contig105.701.1 vs. uniprot
Match: A0A5B6ZL25_DAVIN (Protein-serine/threonine phosphatase n=2 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6ZL25_DAVIN)

HSP 1 Score: 59.3 bits (142), Expect = 5.600e-7
Identity = 57/192 (29.69%), Postives = 89/192 (46.35%), Query Frame = 1
Query:   37 LYGAFDGHGGSSCANFVSRNLPQGVKNSPAWAHLAVRD-----RDNTTTSDHREDAE---EKATTRPENQRVALGGGARGGGGLDDLLVDVMKQALLDGFRSTQEAFAAREARSGKDSGSTAIVAIVCGRHVVIANLGDSGAMFHNDQDTLGESFTAKTEFHTVSNESEKKRVEAAGG-IFTANG-RLFGKL 582
             +G +DGHGGS  AN+    +           HLA+ +     RDN      RE  +   EKA T     R  L         +DD +   + + +  G      +  + E  + + +GSTA+VA++C  H+++AN GDS A+    ++ +     A +  H  + E E  R+EA+GG I   NG R+FG L
Sbjct:  269 FFGVYDGHGGSQVANYCRDRI-----------HLALEEELNIIRDNLVEGSVRETWQVEWEKAFT-----RCFLK--------VDDEVGGTVSKGIAGGNADASNS--SYEPIAPETAGSTAVVALICSSHIIVANCGDSRAVLFRGKEPM-----ALSSDHKPNREDEYARIEASGGKIIQWNGHRVFGVL 429          
BLAST of mRNA_S-firma_F_contig105.701.1 vs. uniprot
Match: A0A0K9QY57_SPIOL (PPM-type phosphatase domain-containing protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QY57_SPIOL)

HSP 1 Score: 58.5 bits (140), Expect = 9.160e-7
Identity = 43/119 (36.13%), Postives = 61/119 (51.26%), Query Frame = 1
Query:  259 GLDDLLVDVM--KQALLDGFRSTQEAFAAREARSGKDSGSTAIVAIVCGRHVVIANLGDSGAMFH-----NDQDTLGESFTAK----TEFHTVSNESEKKRVEAAGGIFTANGRLFGKL 582
            GL   L+DV   K+A+LDGFR+T EA     A  G   G+TA+   V G+ V +AN+GD+ A+       +DQ+        K    T  H      E+ R++ AGG  +  GRL G+L
Sbjct:  140 GLPRELLDVKAAKKAILDGFRTTDEALLLDSAAGGWHDGATAVCLWVLGQTVFVANIGDAKAVVARFTSTSDQNDSNGFIPLKAIVLTREHKAIYPQERARIQKAGGSVSTTGRLQGRL 258          
BLAST of mRNA_S-firma_F_contig105.701.1 vs. uniprot
Match: A0A811PC72_9POAL (Protein-serine/threonine phosphatase n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811PC72_9POAL)

HSP 1 Score: 58.5 bits (140), Expect = 9.570e-7
Identity = 50/185 (27.03%), Postives = 76/185 (41.08%), Query Frame = 1
Query:   37 LYGAFDGHGGSSCANFVSRNLPQGVKNSPAWAHLAVRDRDNTTTSDHREDAEEKATTRPENQRVALGGGARGGGGLDDLLVDVMKQALLDGFRSTQEAF---------------AAREARSGKDSGSTAIVAIVCGRHVVIANLGDSGAMFHNDQDTLGESFTAKTEFHTVSNESEKKRVEAAGG 546
            L+G +DGHGGS  AN+    +           H+ +R+                A +R    R   G G  GG      + ++ ++A  + F+   +                 A RE  +  D GSTA+VA+VC  HV++AN GDS  +    ++ +  S       H    E E  R+EAAGG
Sbjct:   97 LFGVYDGHGGSEVANYCGDRI-----------HVVLRE----------------ALSRAAGARGLSGSGELGG------IQELWEKAFCECFQRVDDEVSGEASRFMFADGVSEARREPVAADDVGSTAVVALVCSSHVIVANCGDSRVVLCRGKEPMALSVD-----HKPDREDEHARIEAAGG 243          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig105.701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000CED48D25.640e-1034.51probable protein phosphatase 2C 8 isoform X1 n=4 T... [more]
A0A0J8BC67_BETVV7.760e-832.50PPM-type phosphatase domain-containing protein n=1... [more]
UPI000B7896327.910e-836.13probable protein phosphatase 2C 8 n=1 Tax=Chenopod... [more]
A0A5C7IHM1_9ROSI9.720e-830.32Protein-serine/threonine phosphatase n=1 Tax=Acer ... [more]
A0A0K9PC33_ZOSMR2.100e-736.78Protein-serine/threonine phosphatase n=1 Tax=Zoste... [more]
UPI000B8B7D5E2.980e-735.14probable protein phosphatase 2C 8 n=1 Tax=Spinacia... [more]
UPI0008F9E4215.370e-731.98protein phosphatase 1L-like n=1 Tax=Bemisia tabaci... [more]
A0A5B6ZL25_DAVIN5.600e-729.69Protein-serine/threonine phosphatase n=2 Tax=David... [more]
A0A0K9QY57_SPIOL9.160e-736.13PPM-type phosphatase domain-containing protein n=2... [more]
A0A811PC72_9POAL9.570e-727.03Protein-serine/threonine phosphatase n=1 Tax=Misca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig105contigS-firma_F_contig105:40683..41755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog71139.XP_010036914.1
PFAMsPP2C
Max annot lvl35493|Streptophyta
KEGG koko:K17500
Evalue8.55e-11
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota,37KWY@33090|Viridiplantae,3GFY0@35493|Streptophyta
EC3.1.3.16
Descriptionphosphatase 2C
COG categoryT
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons2
Model size586
Cds size585
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.4973896-CDS-S-firma_F_contig105:40682..407751622815585.4973896-CDS-S-firma_F_contig105:40682..40775Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig105 40683..40775 -
1696949434.9641583-CDS-S-firma_F_contig105:40682..407751696949434.9641583-CDS-S-firma_F_contig105:40682..40775Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig105 40683..40775 -
1622815585.5089922-CDS-S-firma_F_contig105:41263..417551622815585.5089922-CDS-S-firma_F_contig105:41263..41755Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig105 41264..41755 -
1696949434.978884-CDS-S-firma_F_contig105:41263..417551696949434.978884-CDS-S-firma_F_contig105:41263..41755Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig105 41264..41755 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig105.701.1prot_S-firma_F_contig105.701.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig105 40683..41755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig105.701.1

>prot_S-firma_F_contig105.701.1 ID=prot_S-firma_F_contig105.701.1|Name=mRNA_S-firma_F_contig105.701.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=195bp
MACVSGVVGKVGLYGAFDGHGGSSCANFVSRNLPQGVKNSPAWAHLAVRD
RDNTTTSDHREDAEEKATTRPENQRVALGGGARGGGGLDDLLVDVMKQAL
LDGFRSTQEAFAAREARSGKDSGSTAIVAIVCGRHVVIANLGDSGAMFHN
DQDTLGESFTAKTEFHTVSNESEKKRVEAAGGIFTANGRLFGKLQ
back to top

mRNA from alignment at S-firma_F_contig105:40683..41755-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig105.701.1 ID=mRNA_S-firma_F_contig105.701.1|Name=mRNA_S-firma_F_contig105.701.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1073bp|location=Sequence derived from alignment at S-firma_F_contig105:40683..41755- (Sphaerotrichia firma ET2_F female)
ATGGCCTGTGTTTCTGGGGTCGTGGGGAAAGTGGGACTCTACGGCGCGTT TGATGGGCACGGAGGATCCAGTTGTGCCAACTTCGTGTCGCGAAACCTCC CGCAAGGGGTCAAGAACAGCCCCGCTTGGGCACACCTTGCTGTTCGCGAC CGCGACAACACCACCACCAGTGACCACAGAGAAGACGCGGAAGAGAAAGC CACAACTCGCCCTGAAAATCAACGGGTAGCACTGGGAGGAGGAGCACGCG GCGGTGGTGGTCTCGACGATCTCTTGGTAGACGTGATGAAACAGGCCCTC CTCGACGGCTTTCGAAGCACGCAGGAGGCCTTTGCTGCCCGAGAGGCGCG TTCGGGCAAGGACAGCGGCTCCACAGCAATCGTCGCCATTGTCTGCGGGC GGCATGTGGTCATCGCTAACCTGGGCGATTCCGGCGCGATGTTCCACAAC GATCAAGATACGCTGGGGGAATCGTTCACGGCCAAGACTGAGGTATGCGC GAGGGGCGACAGACACTAGATAACACGGGGTTGCAAACACACAACATAGA CTGCATCGTGCTGCTGTATAAGGTGTTTACACGCTGCTAAATAGTCAAGG GGTCACGCACATAGCCGTAGCAGGAGGTGGGATACTTCGGGGAACTGTGT CGAACGCATTCTTCCTTTGTTGTCCATTTTCTACAAAATTTCTTGTCGGA CACCTATTGCGCTCCAATACCCTCAACGATCATGCACGTTTGATTCCAAG CATCACATCAAGCCAACGCACGACAAATGCCCTTGGCCCGTTTCTGTTTT AGAAGGATTACATAATATACGCGTACACAAGATATTTCAAAGAACATACA CGCTGCTTGAAGCATGGATACCTGTGGTTCGGTTTGTATTTCGGCTTGCG CAAGCGTATTCGTGCAAGGCATGCGGTTCACTTGCTGTTGCACGCCCGCG GTCTGTGTGTGCCATTGTACCTCTTTGCAGTTCCATACCGTGAGCAACGA AAGCGAGAAGAAACGCGTGGAGGCCGCCGGTGGTATTTTCACGGCGAACG GGAGGTTGTTTGGGAAGCTTCAG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig105:40683..41755-

>mRNA_S-firma_F_contig105.701.1 ID=mRNA_S-firma_F_contig105.701.1|Name=mRNA_S-firma_F_contig105.701.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1170bp|location=Sequence derived from alignment at S-firma_F_contig105:40683..41755- (Sphaerotrichia firma ET2_F female)
ATGGCCTGTGTTTCTGGGGTCGTGGGGAAAGTGGGACTCTACGGCGCGTT
TGATGGGCACGGAGGATCCAGTTGTGCCAACTTCGTGTCGCGAAACCTCC
CGCAAGGGGTCAAGAACAGCCCCGCTTGGGCACACCTTGCTGTTCGCGAC
CGCGACAACACCACCACCAGTGACCACAGAGAAGACGCGGAAGAGAAAGC
CACAACTCGCCCTGAAAATCAACGGGTAGCACTGGGAGGAGGAGCACGCG
GCGGTGGTGGTCTCGACGATCTCTTGGTAGACGTGATGAAACAGGCCCTC
CTCGACGGCTTTCGAAGCACGCAGGAGGCCTTTGCTGCCCGAGAGGCGCG
TTCGGGCAAGGACAGCGGCTCCACAGCAATCGTCGCCATTGTCTGCGGGC
GGCATGTGGTCATCGCTAACCTGGGCGATTCCGGCGCGATGTTCCACAAC
GATCAAGATACGCTGGGGGAATCGTTCACGGCCAAGACTGAGATGGCCTG
TGTTTCTGGGGTCGTGGGGAAAGTGGGACTCTACGGCGCGTTTGATGGGC
ACGGAGGATCCAGTTGTGCCAACTTCGTGTCGCGAAACCTCCCGCAAGGG
GTCAAGAACAGCCCCGCTTGGGCACACCTTGCTGTTCGCGACCGCGACAA
CACCACCACCAGTGACCACAGAGAAGACGCGGAAGAGAAAGCCACAACTC
GCCCTGAAAATCAACGGGTAGCACTGGGAGGAGGAGCACGCGGCGGTGGT
GGTCTCGACGATCTCTTGGTAGACGTGATGAAACAGGCCCTCCTCGACGG
CTTTCGAAGCACGCAGGAGGCCTTTGCTGCCCGAGAGGCGCGTTCGGGCA
AGGACAGCGGCTCCACAGCAATCGTCGCCATTGTCTGCGGGCGGCATGTG
GTCATCGCTAACCTGGGCGATTCCGGCGCGATGTTCCACAACGATCAAGA
TACGCTGGGGGAATCGTTCACGGCCAAGACTGAGTTCCATACCGTGAGCA
ACGAAAGCGAGAAGAAACGCGTGGAGGCCGCCGGTGGTATTTTCACGGCG
AACGGGAGGTTGTTTGGGAAGCTTCAGTTCCATACCGTGAGCAACGAAAG
CGAGAAGAAACGCGTGGAGGCCGCCGGTGGTATTTTCACGGCGAACGGGA
GGTTGTTTGGGAAGCTTCAG
back to top