mRNA_S-firma_F_contig105.694.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig105.694.1
Unique NamemRNA_S-firma_F_contig105.694.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig105.694.1 vs. uniprot
Match: A0A6H5J8Z2_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J8Z2_9PHAE)

HSP 1 Score: 333 bits (855), Expect = 8.300e-104
Identity = 160/292 (54.79%), Postives = 208/292 (71.23%), Query Frame = 3
Query:   78 FDESVAREIVQLTEAAYCSAELAGWNCTVCQSFPGMTNVSVLQGQSRNVRGFVGVDVRESSREEETSTSPA--------YIRVPKGALPVVEPLLSISSKPRPRIVVTFSGTDPKSLKNWIDDLEAAPISHAYAGEGCPNCKVHRGFLAAYDVVQDQVRAAVAKHLQHNPDAEILITGHSLGGALATLCFLDLQLTLG-------AVPFAPVYIFGAPRVGNEVFAKFSVSHGVPIFRVVHNRDPVPHLPFESWGYRHPPTEVFFDAEQTSYVVCDDSGEDVTCSDQFWVSF 908
            +DE +A  IV+LTEAAYC+ +LA W+C  CQ FPGM NV+V+ G+ RNVRGFVGVD+ ++      +++P         ++R  +G     +     +   +PRIV+TFSGTDP S+KNWIDDLEA  + + Y G  C  C+VHRGFLAAYD+V+DQVR A+ +H+Q+NP  +ILITGHSLG ALA LCFLDL++  G       +V FAP+Y+FG+PRVGNE FA  +   GV IFR+VH+RDPVPHLP E+WGY HPPTEVF+  +Q+SY VC+ SGED TCS+QFW  F
Sbjct:   52 YDEGLASVIVRLTEAAYCTPQLASWSCKACQHFPGMRNVTVINGEKRNVRGFVGVDIGDAEASNRYTSTPRGPGPDDRRHLRAAEGD---DKGAGGAARSGKPRIVITFSGTDPSSVKNWIDDLEATTVPNTYGGL-CEQCQVHRGFLAAYDLVKDQVRYAIGQHMQYNPHVQILITGHSLGAALAVLCFLDLRVNRGLGQGPNSSVSFAPLYLFGSPRVGNEAFATLTTRPGVSIFRLVHHRDPVPHLPLEAWGYHHPPTEVFYTEDQSSYQVCNKSGEDDTCSNQFWAIF 339          
BLAST of mRNA_S-firma_F_contig105.694.1 vs. uniprot
Match: A0A7S2XH34_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XH34_9EUKA)

HSP 1 Score: 171 bits (434), Expect = 1.090e-43
Identity = 110/289 (38.06%), Postives = 150/289 (51.90%), Query Frame = 3
Query:   75 AFDESVAREIVQLTEAAYCSAELA----GWNCTVCQSFPGMTNVSVLQGQ---SRNVRGFVGVDVRESSREEETSTSPAYIRVPKGALPVVEPLLSISSKPRPRIVVTFSGTDPKSLKNWIDDLEAAPISHA-YAGEGCPNCKVHRGFLAAYDVVQDQVRAAVAKHLQHNPDAEILITGHSLGGALATLCFLDLQLTLGAVPFAPVYIFGAPRVGNEVFAK-FSVSHGV--PIFRVVHNRDPVPHLPFES----WGYRHPPTEVFFDAEQTSY--VVCDDSGEDVTCSD 890
            A++E+ ++ +V +  AAYC+  L      W+C VC+ FP + N S    +   + N +GFV  D  +                                     IVV+FSGTDP  ++NWIDDL+   ++   Y   GC  CKV RGF   Y  VQ  VR +VA + + +P A + ITGHSLGGALA    +DL+L    +    VY FG PRVGN+ FA+ FS   G   P +RV H  DPVPHLP ++     G+ H PTEV++  + +    VVCD SGED +CSD
Sbjct:   67 AYNETRSKRMVAMCGAAYCAGTLGHGVGNWDCDVCKQFPDV-NASEFDDKGVLATNGKGFVAFDPHDGKYGS--------------------------------IVVSFSGTDPLQIQNWIDDLDYFAMTPTDYVAAGCSGCKVDRGFYYTYQAVQKHVRESVANYKKSHPKAALWITGHSLGGALAVHAAVDLRLIGNDI--TGVYTFGQPRVGNKAFAQWFSEGLGSSRPHYRVTHRFDPVPHLPMDNKGPIGGFFHVPTEVYYPKQHSDEGAVVCDGSGEDPSCSD 320          
BLAST of mRNA_S-firma_F_contig105.694.1 vs. uniprot
Match: A0A4D9D459_9STRA (Lipase_3 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D459_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.510e-43
Identity = 87/183 (47.54%), Postives = 113/183 (61.75%), Query Frame = 3
Query:  366 IVVTFSGTDPKSLKNWIDDLEAAPISHAYAGEGCPNCKVHRGFLAAYDVVQDQVRAAVAKHLQHNPDAEILITGHSLGGALATLCFLDLQLTLGAVPFAPVYIFGAPRVGNEVFAKFSVSHG----VPIFRVVHNRDPVPHLPFESWGYRHPPTEVFFDAEQTSYVVCDDSGEDVTCSDQFWV 902
            +VV F+GT    +  W+ +L+       Y  +GC  C+VH GF  AY  ++ QVR  V   LQ +PDA I +TGHSLG A+A  C +DL      V    V  FG PRVGN+ FA F  S       P++R+VHNRDPVPHLP  ++G+ H P EVF++ +QTSY+VC+DSGED  CSDQF V
Sbjct:   40 LVVAFAGTSMDDIVEWMANLDFKKEDFPY--DGCEGCQVHTGFYTAYLELRSQVREFVQYFLQQHPDAPIWVTGHSLGAAIAVHCMVDLMSLSYNV--RRVVNFGQPRVGNKQFATFVASLAESLDFPLYRLVHNRDPVPHLPPRAFGFHHQPFEVFYNEDQTSYIVCNDSGEDPQCSDQFLV 218          
BLAST of mRNA_S-firma_F_contig105.694.1 vs. uniprot
Match: A0A6B2LEG4_9EUKA (Lipase_3 domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LEG4_9EUKA)

HSP 1 Score: 161 bits (407), Expect = 2.000e-41
Identity = 91/241 (37.76%), Postives = 127/241 (52.70%), Query Frame = 3
Query:  177 PGMTNVSVLQGQSRNVRGFVGVDVRESSREEETSTSPAYIRVPKGALPVVEPLLSISSKPRPRIVVTFSGTDPKSLKNWIDDLEAAPISHAYAGEGCPNCKVHRGFLAAYDVVQDQVRAAVAKHLQHNPDAEILITGHSLGGALATLCFLDLQLTLGAVPFAPVYIFGAPRVGNEVFAKFSVSHGVPIFRVVHNRDPVPHLPFESWGYRHPPTEVFFDAEQTSYVVCDDS-GEDVTCSDQF 896
            PG+  V+     + N  G+VGV+            S  YI                        +V F+GT+P S+KNWIDD++  P S++     C  C VH GF   Y  VQD+VR      L   P+  + +TGHSLG  LA L  LDL  T   V  + +Y FG PR+GN+ F ++ +S    ++RV H  DPVPHLP E++G+ H P EVF++ +Q+SY +C  + GED +CSDQF
Sbjct:    3 PGLQMVTAFHNDTTNANGYVGVN-----------PSAGYI------------------------IVAFTGTNPLSIKNWIDDIDTIPTSYS----ACSGCAVHEGFYHTYLSVQDEVRNGFRSILLKYPNLPVQVTGHSLGAVLAELGALDLIQTF-RVRVSSMYHFGGPRLGNDAFTRYLLSSIGEVYRVTHWMDPVPHLPPEAFGFVHNPQEVFYNDDQSSYTLCSSTNGEDPSCSDQF 203          
BLAST of mRNA_S-firma_F_contig105.694.1 vs. uniprot
Match: A0A6T8C1N8_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6T8C1N8_9EUKA)

HSP 1 Score: 162 bits (410), Expect = 4.900e-41
Identity = 94/281 (33.45%), Postives = 140/281 (49.82%), Query Frame = 3
Query:   78 FDESVAREIVQLTEAAYCSAEL----AGWNCTVCQSFPGM-TNVSVLQGQSRNVRGFVGVDVRESSREEETSTSPAYIRVPKGALPVVEPLLSISSKPRPRIVVTFSGTDPKSLKNWIDDLEAAPISHAYAGEGCPNCKVHRGFLAAYDVVQDQVRAAVAKHLQHNPDAEILITGHSLGGALATLCFLDLQLTLGAVPFAPVYIFGAPRVGNEVFAKFSVSH--GVPIFRVVHNRDPVPHLPFESWGYRHPPTEVFFD-AEQTSYVVCDDSGEDVTCSDQF 896
            +D++ +  +V  +  AYC+  L    + W+C  C+ FP +  +    +G+S    G+V  D  + +                                   I+V F+GTDP   + WIDD++   +S+     GC  CKVH+GF   Y  V+ Q+   +      +P + + ITGHSLG A+A    +++     A  FA +Y FG PRVGN  FA ++ S     P FRV H RDPVPHLP E  G+RHP  E+F+  + + SY  CD SGED +CSD++
Sbjct:   25 YDKARSARLVAFSGIAYCTGTLGKGVSNWDCAHCKDFPSVKASTFSAKGESEQ-NGYVAYDPNDGADGS--------------------------------ILVVFTGTDPLKFQQWIDDIDTIAVSYP----GCAGCKVHQGFYDNYKAVRSQMSTLLDSAAVEHPKSPVYITGHSLGAAIALHAAVEVAGGSHASRFAGMYTFGQPRVGNSAFATWAASTLGRSPHFRVTHRRDPVPHLPLEVMGFRHPEREIFYSGSSEGSYKGCDGSGEDSSCSDKY 268          
BLAST of mRNA_S-firma_F_contig105.694.1 vs. uniprot
Match: A0A4D9CWF0_9STRA (Lipase_3 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWF0_9STRA)

HSP 1 Score: 161 bits (408), Expect = 6.840e-41
Identity = 98/270 (36.30%), Postives = 136/270 (50.37%), Query Frame = 3
Query:  126 YC-SAELAGWNCTVCQSFPGMTNVSVLQGQSRNVRGFVGVDVRESSREEETSTSPAYIRVPKGALPVVEPLLSISSKPRPRIVVTFSGTDPKSLKNWIDDLEAAPISHAYAGEGCPNCKVHRGFLAAYDVVQDQVRAAVAKHLQHNPDAEILITGHSLGGALATLCFLDLQLTLGAVPFAPVYIFGAPRVGNEV------FAKF----SVSHGVPIFRVVHNRDPVPHLPFESWGYRHPPTEVFFDAEQTSYVVCDDSGEDVTCSDQFWV 902
            YC ++    W C+ C   P  T V  +     N  GFVG D  E                                     +VV+F+GTD  S+ NWIDDL+   +   +  +GC  CKVH GFL  Y  ++ Q++  V   ++ +P A + +TGHSLG ALA LC +DL L+L + P   V  FG PRVGN+       F+ F    S S  +  +R+VH+RDPVPHLP  S+G+ H P EVF+   +T Y +CD +GED  CSD + +
Sbjct:   10 YCRTSACEAWACSACSRHP-RTEVRRVYDNVHNGNGFVGWDPVEGV-----------------------------------VVVSFAGTDTSSVANWIDDLDE--VKTPWPLQGCQECKVHAGFLTTYSALRPQLQPLVEALVRDHPQAPVWVTGHSLGAALAVLCMVDL-LSL-SYPVRAVVNFGQPRVGNQHVRDAGGFSSFVAAQSASLSLCFYRLVHHRDPVPHLPPASFGFHHSPFEVFYTKNETYYHICDATGEDKHCSDHYLI 239          
BLAST of mRNA_S-firma_F_contig105.694.1 vs. uniprot
Match: A9V5U1_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V5U1_MONBE)

HSP 1 Score: 160 bits (406), Expect = 1.090e-40
Identity = 106/281 (37.72%), Postives = 141/281 (50.18%), Query Frame = 3
Query:   78 FDESVAREIVQLTEAAYCSAE-LAGWNCTVCQSFPGMTNVSVLQGQSRNVRGFVGVDVRESSREEETSTSPAYIRVPKGALPVVEPLLSISSKPRPRIVVTFSGTDPKSLKNWIDDLEAAPISHAYAGEGCPNCKVHRGFLAAYDVVQDQVRAAVAKHLQHNPDAEILITGHSLGGALATLCFLDLQLTLGAVPFAPV--YIFGAPRVGNEVFAKFSVSHGVPI-FRVVHNRDPVPHLPFESWGYRHPPTEVFFDAE---QTSYVVCDDSGEDVTCSDQFW 899
            FD ++A   V L+ AAYC    +  W+C  C                  V   + +DV++     ET T+  YI + +                  RI+V F GT    L  WIDDL+       Y G    + KVH GF  AY  V+  V   V + L +NP+  IL+TGHSLG ALA +C LDL +     P A +  Y +G PRVGN+ FA+F  SH +   +R+ HN DPVPHLP ES G+ H  TEV++  +   Q+S  VCD SGED  CS+Q W
Sbjct:   14 FDYNIALGSVNLSAAAYCDPSVIKAWSCPPC------------------VGTGLALDVKDVFHASETDTN-GYIGIDEAGK---------------RIIVAFQGTH--DLTQWIDDLDFFKADLQYPGASS-DVKVHSGFYKAYRQVKQNVDQVVNQTLFNNPEYTILVTGHSLGAALAAMCSLDLSI---GHPQARILHYTYGQPRVGNQAFAQFYESHNLAQHYRMTHNEDPVPHLPLESMGFYHISTEVYYGEKFEGQSSLKVCDGSGEDPNCSNQHW 254          
BLAST of mRNA_S-firma_F_contig105.694.1 vs. uniprot
Match: W7U0K9_9STRA (Lipase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0K9_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.090e-40
Identity = 105/281 (37.37%), Postives = 144/281 (51.25%), Query Frame = 3
Query:   78 FDESVAREIVQLTEAAYCSAELA--GWNCTVCQSFPGMTNVSVLQGQSRNVRGFVGVDVRESSREEETSTSPAYIRVPKGALPVVEPLLSISSKPRPRIVVTFSGTDPKSLKNWIDDLEAAPISHAYAGEGCPNCKVHRGFLAAYDVVQDQVRAAVAKHLQHNPDAEILITGHSLGGALATLCFLDLQLTLGAVPFAPVYIFGAPRVGNEVFAKFSVSHG----VPIFRVVHNRDPVPHLPFESWGYRHPPTEVFFDAEQTSYVVCDDSGEDVTCSDQFWV 902
            ++ +  R I+   EA+Y     A   WNC+ C   P   +  V +  + +  GFVG +  E                  GAL                 VV F+GT    +  W+ +L+       +  +GC  C+VH GF  AY  ++ QVR  V   LQ +PDA I +TGHSLG A+A  C +DL      V    V  FG PRVGN+ FA F  S       P++R+VH+RDPVPHLP  ++G+ H P EVF++ +QTSY+VC+DSGED+ CSDQF V
Sbjct:  324 YNITAVRTILDYAEASYSCKTSACEAWNCSTCSRHP---DTEVRRISAPDGDGFVGYNSVE------------------GAL-----------------VVAFAGTSMDDIVEWMANLDFK--KEDFPHDGCEGCQVHTGFYTAYLELRSQVREFVQYFLQQHPDAPIWVTGHSLGAAIAVHCMVDLMSLSYNV--RRVVNFGQPRVGNKQFATFVASLAESLDFPLYRLVHHRDPVPHLPPRAFGFHHQPFEVFYNEDQTSYIVCNDSGEDLQCSDQFLV 562          
BLAST of mRNA_S-firma_F_contig105.694.1 vs. uniprot
Match: A0A7S3GUH3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GUH3_9STRA)

HSP 1 Score: 160 bits (404), Expect = 3.310e-40
Identity = 92/274 (33.58%), Postives = 133/274 (48.54%), Query Frame = 3
Query:   93 AREIVQLTEAAYCSA------ELAGWNCTVCQSFPGMTNVSVLQGQSRNVRGFVGVDVRESSREEETSTSPAYIRVPKGALPVVEPLLSISSKPRPRIVVTFSGTDPKSLKNWIDDLEAAPISHAYAGEGCPNCKVHRGFLAAYDVVQDQVRAAVAKHLQHNPDAEILITGHSLGGALATLCFLDLQLTLGAVPFAPVYIFGAPRVGNEVFAKFSVSHGVPIFRVVHNRDPVPHLPFESWGYRHPPTEVFFDAEQTSYVVCDDSGEDVTCSDQF 896
            A   ++L  AAYC+        +  W+C VC +FP MT  S  +    +  GFVG D   +                                    I+++FSGTDP S++NWIDDL+   + + Y    C  C+VH GF  ++  V+D V+  V+      P A + +TGHSLG A+A     +   T   V  +  Y +G PRVG + F ++  S     FRV HNRDPVPHL  ES+ + H P EVF++ +   + +C   GED TC+DQ+
Sbjct:   39 AERYIKLAGAAYCTDPKLRKNSIDDWSCKVCANFPNMTAHS-FKSSKNDANGFVGYDGDANE-----------------------------------IIISFSGTDPTSIRNWIDDLKFRKVKYPY----CDKCEVHDGFYHSFQSVEDDVKKFVSSFQAQYPTATLAVTGHSLGAAMAAHAVAE--YTHMGVTVSTAYAYGMPRVGEDSFEQWYASVVPGTFRVNHNRDPVPHLAPESFDFHHMPYEVFYEDDYKQWKLCSFEGEDKTCADQY 270          
BLAST of mRNA_S-firma_F_contig105.694.1 vs. uniprot
Match: A0A7S1JE99_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JE99_9EUGL)

HSP 1 Score: 160 bits (404), Expect = 3.770e-40
Identity = 103/271 (38.01%), Postives = 142/271 (52.40%), Query Frame = 3
Query:  120 AAYCSAE-LAGWNCTVCQ----SFPGMTNVSVLQGQSRNVRGFVGVDVRESSREEETSTSPAYIRVPKGALPVVEPLLSISSKPRPRIVVTFSGTDPKSLKNWIDDLEAAPISHAYAGEGCPNCKVHRGFLAAYDVVQDQVRAAVAKHLQHNPDAEILITGHSLGGALATLCFLDLQLTLGAVPFAPVYIFGAPRVGNEVFAK-FSVSHGVPIFRVVHNRDPVPHLPFESWGYRHPPTEVFFDAEQTSYVVCDDSGEDVTCSDQFWVSFCV 914
            AAYC+A  +  W C  C     SF G   VSV+   + + + ++G              +P     P G                 +I+V F GT  + L NW+ +L    ++      GCPNC VH GF A +  V+++V A V + L+ +  A + ITGHSLGGALA LC  DL     AVP   V+ +G+PRVG+ +F + F  +     +R+ H RDPVPHLP  S GYRHP +EVF+D   T+Y+VC+ SGED  CS QF VS  +
Sbjct:   49 AAYCNASRIRMWVCGPCLQADVSF-GWQPVSVVTNSTTSTQVYIG-----------RLAAPTVFFPPPG-----------------KIIVAFRGT--QDLVNWLYNLSFKTLTGI---PGCPNCMVHSGFWATWSSVRERVAAQVLERLRAHRGAHVFITGHSLGGALAQLCAADLFHNF-AVPIHAVFTYGSPRVGDAIFVRHFETAVPRASWRLTHWRDPVPHLPPTSLGYRHPSSEVFYDENSTNYLVCNRSGEDPDCSAQFSVSLAI 284          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig105.694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8Z2_9PHAE8.300e-10454.79Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S2XH34_9EUKA1.090e-4338.06Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A4D9D459_9STRA1.510e-4347.54Lipase_3 domain-containing protein n=1 Tax=Nannoch... [more]
A0A6B2LEG4_9EUKA2.000e-4137.76Lipase_3 domain-containing protein n=1 Tax=Arcella... [more]
A0A6T8C1N8_9EUKA4.900e-4133.45Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A4D9CWF0_9STRA6.840e-4136.30Lipase_3 domain-containing protein n=3 Tax=Monodop... [more]
A9V5U1_MONBE1.090e-4037.72Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
W7U0K9_9STRA1.090e-4037.37Lipase n=1 Tax=Nannochloropsis gaditana TaxID=7252... [more]
A0A7S3GUH3_9STRA3.310e-4033.58Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1JE99_9EUGL3.770e-4038.01Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig105contigS-firma_F_contig105:2969..5993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LBM6
PFAMsLipase_3
Max annot lvl2759|Eukaryota
Evalue1.54e-91
EggNOG OGsKOG4569@1|root,KOG4569@2759|Eukaryota
Descriptionphospholipase A1 activity
COG categoryG
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLipase domain protein
Ec32 orthologEc-27_003400.1
Exons3
Model size2383
Cds size888
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig105.694.1prot_S-firma_F_contig105.694.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig105 4282..5811 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.5792427-UTR-S-firma_F_contig105:2968..42811622815584.5792427-UTR-S-firma_F_contig105:2968..4281Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig105 2969..4281 -
1696949434.2678256-UTR-S-firma_F_contig105:2968..42811696949434.2678256-UTR-S-firma_F_contig105:2968..4281Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig105 2969..4281 -
1622815584.6163626-UTR-S-firma_F_contig105:5811..59931622815584.6163626-UTR-S-firma_F_contig105:5811..5993Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig105 5812..5993 -
1696949434.3132892-UTR-S-firma_F_contig105:5811..59931696949434.3132892-UTR-S-firma_F_contig105:5811..5993Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig105 5812..5993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.589202-CDS-S-firma_F_contig105:4281..46621622815584.589202-CDS-S-firma_F_contig105:4281..4662Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig105 4282..4662 -
1696949434.280334-CDS-S-firma_F_contig105:4281..46621696949434.280334-CDS-S-firma_F_contig105:4281..4662Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig105 4282..4662 -
1622815584.598271-CDS-S-firma_F_contig105:4906..50711622815584.598271-CDS-S-firma_F_contig105:4906..5071Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig105 4907..5071 -
1696949434.2910264-CDS-S-firma_F_contig105:4906..50711696949434.2910264-CDS-S-firma_F_contig105:4906..5071Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig105 4907..5071 -
1622815584.6073735-CDS-S-firma_F_contig105:5469..58111622815584.6073735-CDS-S-firma_F_contig105:5469..5811Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig105 5470..5811 -
1696949434.3016539-CDS-S-firma_F_contig105:5469..58111696949434.3016539-CDS-S-firma_F_contig105:5469..5811Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig105 5470..5811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig105.694.1

>prot_S-firma_F_contig105.694.1 ID=prot_S-firma_F_contig105.694.1|Name=mRNA_S-firma_F_contig105.694.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=296bp
MTNVSVLQGQSRNVRGFVGVDVRESSREEETSTSPAYIRVPKGALPVVEP
LLSISSKPRPRIVVTFSGTDPKSLKNWIDDLEAAPISHAYAGEGCPNCKV
HRGFLAAYDVVQDQVRAAVAKHLQHNPDAEILITGHSLGGALATLCFLDL
QLTLGAVPFAPVYIFGAPRVGNEVFAKFSVSHGVPIFRVVHNRDPVPHLP
FESWGYRHPPTEVFFDAEQTSYVVCDDSGEDVTCSDQFWVSFCVVLMSLR
RTVYIRPQRTRRCVTRIHGVLLHDLSVNGTSSAKENICIIGVQIY*
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mRNA from alignment at S-firma_F_contig105:2969..5993-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig105.694.1 ID=mRNA_S-firma_F_contig105.694.1|Name=mRNA_S-firma_F_contig105.694.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3025bp|location=Sequence derived from alignment at S-firma_F_contig105:2969..5993- (Sphaerotrichia firma ET2_F female)
CGCGAGTAGCTCTCCAAGCCCCGGCTTTGCTGTTCGTCCTTTTCACCACC ATCCTCGGTGCTGCGTCGGAGCCCGCTTTCGACGAGAGTGTCGCGAGAGA GATAGTCCAGCTAACCGAGGCGGCCTACTGCTCAGCGGAGCTGGCGGGAT GGAACTGCACCGTATGCCAGTCCTTCCCGGGGATGACGAACGTCTCCGTC CTCCAGGGGCAGTCGCGCAACGTCCGAGGCTTTGTCGGTGTTGACGTCCG AGAAAGCAGCAGAGAAGAGGAGACTTCAACTTCACCAGCCTACATTCGGG TGCCGAAAGGCGCCCTTCCTGTAGTAGAGCCACTGCTGTCTATTAGCAGC AAACCTAGACCGCGCATCGTGGTGACATTTTCGGGAACCGACCCGAAATC CCTCAAGAACTGGATCGATGACCTCGAGGCGGCACCCATCTCGCACGCCT ACGCAGGCGAGGGCTGCCCAAACTGCAAGGTTCACCGAGGTTTTCTCGCC GCGTACGATGTTGTCCAGGATCAGGTGGGTGGTGACGTCGTGATGGAGTG TGAGTGTGTTGTGCCTCGGATGTGCCTTTCGCTGCATGGGATACCTGCAT TCGTACACCACGCAAGCTGGAGCGTATTTGAAGTGATGTGACAGAGTAGT CTACCCGTGTGTACCCGACTCGGCCTGGACCGTCGCCGCTTTGCTGCCTG CCGTAACACTGCAACCCTTCATGTCACTCGCTCCCCGATTAGCCCGGCTT CCAGGAATAATTCTTTGTTACAGCATGCCATTGAGGTCAGAGTAGCTCCT ACCAAACCTCTTATGGCAAGAGCCCTTGTTCCAAACAGCAGTTCCTGCCG GGCGTGCCGTCGACGCGTGCGTCCTCTTCCTCTTATCCCCGTCGATCACA TCCCCACACGGTTCTCTTGCAGGTTCGCGCGGCGGTCGCCAAGCACCTCC AACACAACCCGGACGCAGAAATCCTCATCACGGGCCACTCCTTGGGGGGC GCGCTAGCAACGCTGTGCTTTTTGGATCTCCAGCTGACGTTGGGCGCCGT GCCCTTCGCGCCTGTGTACATTTTCGGTGCTCCTCGGGTAAGGGTCTTTA CCGTTTAAAACCCTGTGTTTTGTGTGTACCACGCAACGTTCTCTCACAGA GGGGCAACATCGGCATACGAAGATGGCGTTTTGCGCGCCCTCAGGCACTT GGTTGTGCTTGCCAGCAGCAGGCCGAGAATGTTGCGAACGGCACACACTC ACGGCTGAAGACCACCTACGCTAGGTTTCATGTTACGATTGTGCACATTC CCCGCCGCCCCGTTTTTTCGTCCCTATCCAGGTTGGGAACGAAGTGTTTG CCAAGTTCTCTGTCTCGCACGGGGTGCCCATCTTCCGGGTTGTGCACAAC CGCGACCCTGTGCCACACCTGCCGTTCGAGTCCTGGGGGTACCGCCACCC GCCAACGGAGGTGTTTTTCGACGCAGAGCAGACGAGCTACGTGGTTTGCG ATGACAGCGGGGAGGACGTGACGTGCTCGGACCAGTTCTGGGTGAGTTTT TGCGTGGTGCTGATGAGTCTAAGGCGTACCGTATACATTAGACCGCAGCG AACACGACGGTGCGTGACCCGCATTCATGGTGTGCTGCTCCACGATCTGT CAGTGAACGGTACAAGCTCTGCCAAAGAGAATATATGTATCATCGGTGTT CAGATTTATTGAAAGAACGCGAACTGGACGTGCGATCACGGAAGCGTGGA TCTGCTGTTGTTTTGTTCGTTTTCCTGTCTAGAAAGCCCTCTGTAGACGG ACCTCTTGAATGCCGCCGTCATGCGCGCATCTTCTGGTCGACTTTCTCGA CGTGGCGACCGGCCGAAACGTCTTTACGTTTGTACCACCGCTCGCAGGTG ATCTTCGGCGCCCTGCACGTTTCGGACCACCTCGCGTACCTGGAGGTGGA CTACACCAAGGCCTATTTGCAGTGCTTGGTAACCGGAGAAAGAGGGAGCA GCAAAGCCGCGGCCGTGGTCCCGGCTTCCTCTGCGATGATCGCTTAGAAA GGACTTCATCAAGGGAAAATGGAAGGATCGGCAAGATGCGCCGGAGGCAA AACACAACGGTGTCGGCCGTGGCAGCGCCAGATGCCGCGATAGTCTCGTT TGAAGCCGGGATGACAGCTGAAGAACGGGTGGAACTATAGGCTCTGATTG CACGCATAGGCAGGAGCAGGAGCTGTCGAATCGAAGCATGGCCGTGGACG GAGTAAAGACGCCCTCGAGTTGTATATTGGCGGAAAAGAAGGCATCTTGT TGGTTTGGCGGGGAGCTTTCGGCTCTTGTTTGTCTCGGCGGCTTTTTTGT AAATACTTCGGAGATACATGCCGGTATATCCCCGACCGACGCGTACTCTA CCCACCCAATTCTGCGCTCTTTCGTGTCCATGCCTTACATACGTTTCAGT TGTTGGGTTGTGACCACGAATAAGGTGATTGTGGTTGTAGTTGTTTTGGA TCGTTTGAGGCCTCCTCGGTGATCCATCCGCTAGAGTCTTCCGATGCTTA TGGAGTTTTTCGGCGGGCTGGGAAACACTTTGGGTGCCTGCCTGAGTGGT CTGAGGTTGCCGACGCTCTTGCGGAGGAAGTTCAAGTTCTTCGCACCAGG GGTATTGCGGGTGCTCTGTAAATAATTGAGTGAATAACTACGGACGCTCT TTGCCGAGCGATAGCGCTGCTGTACATTGTGAACTACTTACGCCCGACGG TAGCAAAATGAGAAGAGATGTTTGACGTTCCTTCGACTTTCGCTCTTGTT CGTTGCGAGCCTTCATGGGCAACGCGAAAAGTCAGGCTGTATTGTGGTTT CAGGAGAAGCAAGACATGGCCAGCAACGCTGGCTTGGTTCAAACACACGC GTAAATCGCTCCGATCGGTGTCCACTATTGAGTGTCTTCAGTTCGGCGGA ATCCAAATGGAACGAAAGGTGGCAAAAAAAAAACGCCTCGAAGGACAACC AGGGGCGAATTCACCACCATTGAAC
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Coding sequence (CDS) from alignment at S-firma_F_contig105:2969..5993-

>mRNA_S-firma_F_contig105.694.1 ID=mRNA_S-firma_F_contig105.694.1|Name=mRNA_S-firma_F_contig105.694.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1776bp|location=Sequence derived from alignment at S-firma_F_contig105:2969..5993- (Sphaerotrichia firma ET2_F female)
ATGACGAACGTCTCCGTCCTCCAGGGGCAGTCGCGCAACGTCCGAGGCTT
TGTCGGTGTTGACGTCCGAGAAAGCAGCAGAGAAGAGGAGACTTCAACTT
CACCAGCCTACATTCGGGTGCCGAAAGGCGCCCTTCCTGTAGTAGAGCCA
CTGCTGTCTATTAGCAGCAAACCTAGACCGCGCATCGTGGTGACATTTTC
GGGAACCGACCCGAAATCCCTCAAGAACTGGATCGATGACCTCGAGGCGG
CACCCATCTCGCACGCCTACGCAGGCGAGGGCTGCCCAAACTGCAAGGTT
CACCGAGGTTTTCTCGCCGCGTACGATGTTGTCCAGGATCAGATGACGAA
CGTCTCCGTCCTCCAGGGGCAGTCGCGCAACGTCCGAGGCTTTGTCGGTG
TTGACGTCCGAGAAAGCAGCAGAGAAGAGGAGACTTCAACTTCACCAGCC
TACATTCGGGTGCCGAAAGGCGCCCTTCCTGTAGTAGAGCCACTGCTGTC
TATTAGCAGCAAACCTAGACCGCGCATCGTGGTGACATTTTCGGGAACCG
ACCCGAAATCCCTCAAGAACTGGATCGATGACCTCGAGGCGGCACCCATC
TCGCACGCCTACGCAGGCGAGGGCTGCCCAAACTGCAAGGTTCACCGAGG
TTTTCTCGCCGCGTACGATGTTGTCCAGGATCAGGTTCGCGCGGCGGTCG
CCAAGCACCTCCAACACAACCCGGACGCAGAAATCCTCATCACGGGCCAC
TCCTTGGGGGGCGCGCTAGCAACGCTGTGCTTTTTGGATCTCCAGCTGAC
GTTGGGCGCCGTGCCCTTCGCGCCTGTGTACATTTTCGGTGCTCCTCGGG
TTCGCGCGGCGGTCGCCAAGCACCTCCAACACAACCCGGACGCAGAAATC
CTCATCACGGGCCACTCCTTGGGGGGCGCGCTAGCAACGCTGTGCTTTTT
GGATCTCCAGCTGACGTTGGGCGCCGTGCCCTTCGCGCCTGTGTACATTT
TCGGTGCTCCTCGGGTTGGGAACGAAGTGTTTGCCAAGTTCTCTGTCTCG
CACGGGGTGCCCATCTTCCGGGTTGTGCACAACCGCGACCCTGTGCCACA
CCTGCCGTTCGAGTCCTGGGGGTACCGCCACCCGCCAACGGAGGTGTTTT
TCGACGCAGAGCAGACGAGCTACGTGGTTTGCGATGACAGCGGGGAGGAC
GTGACGTGCTCGGACCAGTTCTGGGTGAGTTTTTGCGTGGTGCTGATGAG
TCTAAGGCGTACCGTATACATTAGACCGCAGCGAACACGACGGTGCGTGA
CCCGCATTCATGGTGTGCTGCTCCACGATCTGTCAGTGAACGGTACAAGC
TCTGCCAAAGAGAATATATGTATCATCGGTGTTCAGATTTATTGAGTTGG
GAACGAAGTGTTTGCCAAGTTCTCTGTCTCGCACGGGGTGCCCATCTTCC
GGGTTGTGCACAACCGCGACCCTGTGCCACACCTGCCGTTCGAGTCCTGG
GGGTACCGCCACCCGCCAACGGAGGTGTTTTTCGACGCAGAGCAGACGAG
CTACGTGGTTTGCGATGACAGCGGGGAGGACGTGACGTGCTCGGACCAGT
TCTGGGTGAGTTTTTGCGTGGTGCTGATGAGTCTAAGGCGTACCGTATAC
ATTAGACCGCAGCGAACACGACGGTGCGTGACCCGCATTCATGGTGTGCT
GCTCCACGATCTGTCAGTGAACGGTACAAGCTCTGCCAAAGAGAATATAT
GTATCATCGGTGTTCAGATTTATTGA
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