mRNA_S-firma_F_contig1049.688.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1049.688.1
Unique NamemRNA_S-firma_F_contig1049.688.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 2.050e-70
Identity = 138/296 (46.62%), Postives = 156/296 (52.70%), Query Frame = 1
Query:    1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIAEDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPT-----------------CAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVVGEEPT-----------------CAAGIPGILKDDVCCPTSCGACGGSHCNGRNGGDDFTGREACCQSGVTTLGRICS 786
            C  GI GI   DVCC  SCG+CGG+GCSGR+GG       ACC GGV   GR CS T   PC+     MC  GI GI   DVCC  SCG+C G+GC+GR+GG       ACC GGV   GR CS T  APC+    PT                 C  GI GI  +DVCC  SCG+CGG GC+ R+GG       ACC  GV   GR CS T  APC+ G  PT                 C  GI GI   DVCC TSCG+CGG+ C+GR+GG       ACC  GV   GR CS
Sbjct:   46 CDGGIVGIQTSDVCCSASCGSCGGTGCSGRDGG-----SGACCGGGVRASGRYCSVTGEAPCMTVP--MCDGGIVGIQASDVCCSASCGSCAGTGCSGRDGGSG-----ACCGGGVQASGRYCSVTGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQTSDVCCSASCGSCGGTGCSSRDGGSG-----ACCGGGVRASGRYCSVTGEAPCMTGAAPTPEXXXXXXXXXTVEVPMCDGGIVGIQTSDVCCSTSCGSCGGTGCSGRDGGSG-----ACCGGGVRASGRYCS 319          
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 7.400e-70
Identity = 142/313 (45.37%), Postives = 161/313 (51.44%), Query Frame = 1
Query:    1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIA-----------------EDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPT-----------------CAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVVGEEPT-----------------CAAGIPGILKDDVCCPTSCGACGGSHCNGRNGGDDFTGREACCQSGVTTLGRICS 786
            C  GI GI + DVCC  SCG+CGGSGCS R+GG      E+CC GGV   GR CS T   PC+ +                 E  MC  GI GI   DVCC  SCG+CGGSGC GR+GG      E+CC GGV   GR CS T  APC+    PT                 C  GI GI  +DVCC  SCG+CGG GC GR+GG      E+CC  GV   GR CS T  APC+ G  PT                 C  GI GI   DVCC  SCG+CGGS C+GR+GG      E+CC  GV   GR CS
Sbjct:   77 CDGGIVGIQSSDVCCSASCGSCGGSGCSSRDGG-----SESCCGGGVRASGRYCSVTGEAPCMTSPAPTXXXXXXXXXXXXXEIPMCDGGIVGIQTSDVCCSASCGSCGGSGCTGRDGGS-----ESCCGGGVRASGRYCSITGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCTGRDGGS-----ESCCGGGVRASGRYCSITGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCSGRDGGS-----ESCCGGGVRGSGRYCS 369          
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 2.920e-67
Identity = 135/296 (45.61%), Postives = 153/296 (51.69%), Query Frame = 1
Query:    1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIAEDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPT-----------------CAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVVGEEPT-----------------CAAGIPGILKDDVCCPTSCGACGGSHCNGRNGGDDFTGREACCQSGVTTLGRICS 786
            C   I GI + DVCC  SCG+CGGSGC+GR+GG      E+CC GGV   GR CS T   PC+     MC   I GI + DVCC  SCG+CGGSGC  R+GG      E+CC GGV   GR CS T  APC+    PT                 C   I GI  +DVCC  SCG+CGG GC  R+GG      E+CC  GV   GR CS T  APC+ G  PT                 C   I GI   DVCC  SCG CGGS C GR+GG      E+CC  GV   GR CS
Sbjct:    2 CDGDIVGIQSSDVCCSASCGSCGGSGCTGRDGG-----SESCCGGGVRASGRYCSITGEAPCMTVP--MCDGDIVGIQSSDVCCSASCGSCGGSGCTERDGGS-----ESCCGGGVRASGRYCSITGEAPCMTGPAPTPDXXXXXXXXXTVEVPMCDGDIVGIQSSDVCCSASCGSCGGSGCTERDGGS-----ESCCGGGVRASGRYCSITGEAPCMTGPAPTPDXXXXXXXXXTVEVPMCDGDIVGIQSSDVCCSASCGTCGGSGCTGRDGGS-----ESCCGGGVRASGRYCS 275          
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 1.700e-64
Identity = 134/320 (41.88%), Postives = 157/320 (49.06%), Query Frame = 1
Query:   13 IPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVC----------SATV---GTPCVIAEDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPT--------------------------------CAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVVGEEPT-----------------CAAGIPGILKDDVCCPTSCGACGGSHCNGRNGGDDFTGREACCQSGVTTLGRICS 786
            I GI N DVCCP SCG CG  GCS   GG       +CC   V   G  C          S+T     TP   +E  MC  GI GI   +VCC  SCG+CGG GC+GR+GG D     ACC GGVT  GR+CS T  APC+    PT                                C  GI GI   +VCC  SCG+CGG+GC+GR+GG D     ACC  GVT  GR+C+ T  APC+ G  PT                 C  GI GI   +VCC  SCG+CGG  C+GR+GG D     ACC  GVT  GR+C+
Sbjct:   66 ISGIQNKDVCCPVSCGMCGDEGCSTAPGG-----AASCCTTNVLDAGIECGEAPCVIDASSSTTPAPATPAPTSEVPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSD-----ACCGGGVTASGRLCSVTGEAPCITGPAPTPAPSPPXTVEGPAPTLEPXXXXXXPPAGEVPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSD-----ACCGGGVTASGRLCAVTGEAPCITGPAPTPEXXXXXXXXXTVEVPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSD-----ACCGGGVTASGRLCA 365          
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 1.290e-56
Identity = 106/219 (48.40%), Postives = 123/219 (56.16%), Query Frame = 1
Query:    1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIA-----------------EDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPTCAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVV 606
            C  GI GI   D+ C +SCG+CGG+GC+ R+GG      EACC GGV   GR CS T   PC+                   E  MC  GI GI   D+CC +SCG+CGG+GC  R+GG      EACC GGV   GR CS T  APC+  E P C  GI GI ++DVCC  SCG+CGG GC  R+GG      EACC  GV   GR CS T  APCVV
Sbjct:   64 CDGGIVGIQQSDISCSSSCGSCGGTGCTSRDGG-----SEACCGGGVRASGRYCSVTGEAPCMTGPAPTPEXXXXXXXXXTDEVSMCDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGS-----EACCGGGVRASGRYCSVTGEAPCMTNEVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGS-----EACCGGGVRASGRDCSVTGEAPCVV 267          
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 2.110e-54
Identity = 106/219 (48.40%), Postives = 123/219 (56.16%), Query Frame = 1
Query:    1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIA-----------------EDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPTCAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVV 606
            C  GI GI   D+CC +SCG+CGG+GC+ R+GG      EACC GGV   GR CS T   PC+                   E  MC  GI GI   D+CC + CG+CGG+GC  R+GG      EACC GGV   GR CS T  APC+  E P C  GI GI ++DVCC  SCG+CGG GC  R+GG      EACC  GV   GR CS T  APCVV
Sbjct:   25 CDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGG-----SEACCGGGVRASGRFCSVTGEAPCMTGPAPTPXXXXXXXXXXTDEVPMCDGGIVGIQQSDICCSSRCGSCGGTGCTSRDGGS-----EACCGGGVRASGRYCSVTGEAPCMTNEVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGS-----EACCGGGVRASGRDCSVTGEAPCVV 228          
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 3.130e-51
Identity = 115/245 (46.94%), Postives = 132/245 (53.88%), Query Frame = 1
Query:    1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIAE---------------DQ----MCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPT-----------------CAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVV--GEEPT 621
            C  GI GI + DVCC  SCG+CGG+GC+GR+GG D     ACC GGV + GR CS T   PC+                  D+    MC  GI GI + DVCC +SCG+CGGSGC GR+GG+D     ACC GGV   GR CS T  APC+    PT                 C  GI GI  +DVCC  SCG+CGG GC  R+GG D     ACC  GV   GR CS T  APCVV  G  PT
Sbjct:   53 CDGGIVGIQSSDVCCSLSCGSCGGTGCTGRDGGAD-----ACCGGGVRSSGRFCSVTGEAPCITGPAPTPEPTXXXXXXXXDEGAVPMCDGGIVGIQSSDVCCTSSCGSCGGSGCTGRDGGED-----ACCGGGVRASGRYCSVTGEAPCMTGPAPTPXXXXXXXXXXTEEVPMCDGGIVGIQSSDVCCSLSCGSCGGTGCTVRDGGAD-----ACCGGGVRASGRDCSVTGEAPCVVTSGVPPT 282          
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 2.030e-49
Identity = 107/236 (45.34%), Postives = 120/236 (50.85%), Query Frame = 1
Query:    1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIA-----------------EDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPT-----------------CAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVV 606
            C  GI GI   DVCC  SCG+CGGSGCSGR+GG D     ACC GGV   GR CS T   PC+                   E  MC   I GI   DVCC  SCG+CGGSGC+GR+GG D     ACC GGV   GR CS T  APC+    PT                 C  GI GI  +DVCC  SCG+     C GR+GG D     ACC  GV   G +CS T  APC++
Sbjct:  180 CEGGIAGIQASDVCCSVSCGSCGGSGCSGRDGGSD-----ACCGGGVRASGRFCSITEEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGEIVGIQASDVCCSASCGSCGGSGCSGRDGGSD-----ACCGGGVRASGRFCSVTGEAPCMTGPAPTTEPTXXXXXXXTVEVPMCDGGIVGIQASDVCCSASCGSXXXXXCTGRDGGPD-----ACCGGGVRASGLLCSVTGEAPCLL 400          
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: H6WBB4_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB4_VAULI)

HSP 1 Score: 115 bits (287), Expect = 3.270e-26
Identity = 95/277 (34.30%), Postives = 124/277 (44.77%), Query Frame = 1
Query:   40 CCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIAEDQMCAAGIPGI-------LNDDV---CCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVA-----------EEPTCAAGIPGILKNDV----CCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVVGEE------PTCAAGIP-GILKDDV---CCPTSCGACGGSHCNGRNGGDDFTGREACCQSGVT 765
            CCP+SCG CGG GC  R GGD      +CC   + T    CS   G PC IA+  M    +P +       ++D     CCP++CG CGG+GC+ R GGD       CC G VT     CS     PC+++            +P  +   P     D     CCP +CGACGG GC+ R GG        CC   +T   + CS +   PC+  ++      P  +   P G + D     CCP  CG CGG  C+ R GG       +CC   VT
Sbjct:   40 CCPSSCGTCGGEGCYMRPGGD-----MSCCTSKIETP---CSKGSGPPCKIADYNMPPPPMPPMDKCPKESISDSTGKYCCPSTCGQCGGAGCDKRPGGD-----VKCCTGKVTNS---CS-MAKPPCMISGGHTPPTPPPTNKPPASGKCPHESIPDSSGMKCCPATCGACGGFGCDKRPGG-----AMMCCTGNIT---KSCSMSAP-PCIASDDKPYPPMPPSSGKCPDGSIPDASGMKCCPMKCGTCGGLGCDMRPGG-----AASCCTGSVT 285          
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: A0A6H5JVK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK3_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.920e-19
Identity = 54/118 (45.76%), Postives = 59/118 (50.00%), Query Frame = 1
Query:    1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIA-----------------EDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNG 303
            C  GI GI   DVCC  SCG+CGGSGCSGR+GG D     ACC GGV   GR CS T   PC+                   E  MC  GI GI   DVCC  SCG+       GR+G
Sbjct:    2 CDGGIVGIQASDVCCSASCGSCGGSGCSGRDGGSD-----ACCGGGVRASGRFCSVTGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQASDVCCSASCGSXXXXXXXGRDG 114          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3U7_ECTSI2.050e-7046.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4E0_ECTSI7.400e-7045.37N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5JTV1_9PHAE2.920e-6745.61Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JWJ0_9PHAE1.700e-6441.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5D5_ECTSI1.290e-5648.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3T6_ECTSI2.110e-5448.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVC9_9PHAE3.130e-5146.94AMOP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K3Y1_9PHAE2.030e-4945.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
H6WBB4_VAULI3.270e-2634.30Uncharacterized protein n=1 Tax=Vaucheria litorea ... [more]
A0A6H5JVK3_9PHAE3.920e-1945.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1049contigS-firma_F_contig1049:20792..24703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FJ68
Preferred nameMTPAP
PFAMsFKBP_C,GOLGA2L5,PAP_assoc
Max annot lvl2759|Eukaryota
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Evalue1.56e-51
EggNOG OGsCOG0086@1|root,KOG4725@1|root,KOG0260@2759|Eukaryota,KOG4725@2759|Eukaryota
EC2.7.7.19
Descriptionimportin-alpha family protein binding
COG categoryS
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons8
Model size789
Cds size786
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1049.688.1prot_S-firma_F_contig1049.688.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1049 20794..24703 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.9323242-CDS-S-firma_F_contig1049:20793..208881622815583.9323242-CDS-S-firma_F_contig1049:20793..20888Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 20794..20888 -
1696949433.9327624-CDS-S-firma_F_contig1049:20793..208881696949433.9327624-CDS-S-firma_F_contig1049:20793..20888Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 20794..20888 -
1622815583.9427269-CDS-S-firma_F_contig1049:21043..211211622815583.9427269-CDS-S-firma_F_contig1049:21043..21121Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 21044..21121 -
1696949433.9457052-CDS-S-firma_F_contig1049:21043..211211696949433.9457052-CDS-S-firma_F_contig1049:21043..21121Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 21044..21121 -
1622815583.9524598-CDS-S-firma_F_contig1049:21734..218631622815583.9524598-CDS-S-firma_F_contig1049:21734..21863Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 21735..21863 -
1696949433.9560695-CDS-S-firma_F_contig1049:21734..218631696949433.9560695-CDS-S-firma_F_contig1049:21734..21863Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 21735..21863 -
1622815584.0002809-CDS-S-firma_F_contig1049:22020..220981622815584.0002809-CDS-S-firma_F_contig1049:22020..22098Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 22021..22098 -
1696949433.9667158-CDS-S-firma_F_contig1049:22020..220981696949433.9667158-CDS-S-firma_F_contig1049:22020..22098Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 22021..22098 -
1622815584.0169232-CDS-S-firma_F_contig1049:23373..235021622815584.0169232-CDS-S-firma_F_contig1049:23373..23502Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 23374..23502 -
1696949433.980577-CDS-S-firma_F_contig1049:23373..235021696949433.980577-CDS-S-firma_F_contig1049:23373..23502Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 23374..23502 -
1622815584.032068-CDS-S-firma_F_contig1049:23661..237391622815584.032068-CDS-S-firma_F_contig1049:23661..23739Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 23662..23739 -
1696949433.9932377-CDS-S-firma_F_contig1049:23661..237391696949433.9932377-CDS-S-firma_F_contig1049:23661..23739Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 23662..23739 -
1622815584.0430675-CDS-S-firma_F_contig1049:24341..244701622815584.0430675-CDS-S-firma_F_contig1049:24341..24470Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 24342..24470 -
1696949434.0019352-CDS-S-firma_F_contig1049:24341..244701696949434.0019352-CDS-S-firma_F_contig1049:24341..24470Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 24342..24470 -
1622815584.0542264-CDS-S-firma_F_contig1049:24633..247031622815584.0542264-CDS-S-firma_F_contig1049:24633..24703Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 24634..24703 -
1696949434.013129-CDS-S-firma_F_contig1049:24633..247031696949434.013129-CDS-S-firma_F_contig1049:24633..24703Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 24634..24703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1049.688.1

>prot_S-firma_F_contig1049.688.1 ID=prot_S-firma_F_contig1049.688.1|Name=mRNA_S-firma_F_contig1049.688.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=262bp
CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTL
GRVCSATVGTPCVIAEDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRN
GGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPTCAAGIPGILKND
VCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPC
VVGEEPTCAAGIPGILKDDVCCPTSCGACGGSHCNGRNGGDDFTGREACC
QSGVTTLGRICS
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mRNA from alignment at S-firma_F_contig1049:20792..24703-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1049.688.1 ID=mRNA_S-firma_F_contig1049.688.1|Name=mRNA_S-firma_F_contig1049.688.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3912bp|location=Sequence derived from alignment at S-firma_F_contig1049:20792..24703- (Sphaerotrichia firma ET2_F female)
TGCGCCGCCGGCATTCCCGGGATTCTTAACGACGACGTCTGCTGCCCAAC CAGCTGTGGTGCTTGCGGAGGTACGTGGATCAAACGCCGTAGTCTGTCCT TGAATAGATACTGTAGGTCGGGTTATCATCATGCAGGGTCGGTGCCATGT TGCACGCCTATGCTTACTGCTACAGTACCACCGCTGATGCTGCGTGCATT CCCTTGTACCCCGCACATACATGTTGCGTTCAGGCTCCGGTTGTAGTGGA AGAAACGGCGGTGACGACTTCACCGGTAAGGAAGCCTGCTGCGTAGGAGG CGTCACAACGCTGGGGCGCGTATGCTCAGCTACCGTCGGAACTCCCTGTG TCATCGCGGAAGGTACGTTTTCTTCGTATATTCGCCTACAAGGACAACAT TTAGTCTAGGAGTCGGCAAGTGGTGTTGTTCTTCTTGTGGTTTGCGAACG CGTGCACACTCCAACTTTGAATGTCGCAGTATTGACAATGAGGACATGCA CCGTCAAAGGTCAGCGGTGTTGGTATTGGCCGGTAAAGTCAGAAATCGTC TGTCTGCTGCTCCAGAGAACGATCACCTTTGGTGGAAGTGACTGCAGTAC CGAGCATCTTTTTTCATCCTTCACTTCGCTGATCTTTCAAACCTGGAACA ATGAAACCCCTGCACACGGACCAATTTACGCATCTCCCGTCTCTGTGTAG TAGATGTTGTTGTTGGTGGTGGTGCCATTTGCTCCTTTTTGCTGGGCACC CTGCGGGGTCGGCAATGCTGCATGCTGCCGGTGCGCGTACCACAGACCCA CCACCAGCACACACCACTGCACCGGTCCCGAAGGTACATCAGGTTGACGG TAGTTCTTGCTTGACCACTGAGTTCCCGTTTCAAGCTTTGCAAAATACAG CCATATTGAACCCTCTCATGTACATGTGCTGAAGTTGCTTCCGCCTTGTG GTCGAAATGAGCAGACCAAATGTGCGCCGCCGGCATTCCCGGGATTCTTA ACGACGACGTCTGCTGCCCGACCAGCTGTGGTGCTTGCGGAGGTACGTGG ATCAAACGCCGTAGTCTGTCCTTGAATACATACTGCAGGGCGGGTTATCA TCATGCAGGGTCGGTGTCATGTTGCACGCCTATGCTTACTGCCACAGTAC CACCGCTGATGCTGCGTGCATTCCCTTGTACCCCGCACATATTGCGTTCA GGTTCCGGTTGTAATGGAAGAAACGGCGGTGACGACTTCACCGGCAGAGA AGCCTGCTGCGTAGGAGGCGTCACAACGCTGGGGCGCGTATGCTCAGCTA CCGTCGGAGCCCCTTGTGTCGTCGCGGAAGGTGCGGTTTCGGATTCGCGT GCAGGGACAGCATTGAAGGCGTCGACAATGTGGCAATGTCTTCTTGTGGT TTGCGAATGAGTGCAAACTACCATTTGAACTTCGCAGTAGCAACAAGCAG TGGACATACACCGTTCAAGGTTACCGGTGTTGGTGTTGGCCGGTAGAGTC AGAAATCTCTGTCTGCTGCTCCGAAGAACGACAAAGTTTGTTGGAAGTGA CCGTCAGGTTTCGAGTATGGTACTGAGCAATGGAGACTAACATTCAGGTC AACTTTCATCCTTCGGTTAATTCACTGATCGTTCAAACCTGGAACGACGA CGAACCCCATGCACACCGAACAATTCCGAACAACTCACGTATATTCCTGC CTGTGTGTAGTCTGGCTGTTGTTGTTGGTGCAGTGGTGGTGATGTTGGTG GCGGTGGTGTCTTCTGCTCCCTTTGGTTAGATGTCGAGAATATCGACGCT GCATGTAGCCGGTGCGTATACAATAGACACACCATCACCCACCCCTGCAC CCGTCACGGAACGTCGTACAGAAGGCGTCCCCATGTGGGAAATTTCAAAG CAAGAAGTGTAGGCTCAGATCCGTGAAAGTTTCTGTAAGAAATTTGTAAT TTCGGCAAAGAAACAGCTCAATCTGGGCTGCCAACTAAGGAACACCCCAA TAGGTAACTGTGGGCAGGAGCAATCCAAACAAGAAACGAAGCGCACCAGG AGAGGGCGTGAAATATAAGAAACCGTCGTTTGCCGGTGCCCACCTATACC CCCCGGGTGGGTGTACGTTTTGGTAGGTGGGTATGGGTGGATATCTCGTT AGCGAACCCTCGTTTTCGGCCACACTTCCTGGTCACGTGTTTGAAAGACA CATGCGGGCGTGATGGTCCTTCACACCACCTCGATCGGAAGCTTGAATGA CTTGTTGGCCATATACCATCAGCTTAAGAGCGACCAAGTCGCACATTCCA AACAGCACCTCCTCAACGGAAAATAATTCAAGAAACAAGTAACACAAGGG AGAGGTCCCGAAATAATAGAGAAACGGCGAACAAGAAACCCAGCAACATC GGCTGGCAGGTCGGTCGAACATAAGAAATTGAGGCTTCACCCATATCTTA CGTTTCTTGCTTGCGGGCACCTTCTGTACATTAAGCTGGCCGTGGTTCTT GCTTGGCAATTGAGTTCCCGTCTCAAGCTTTGCAAATACAGCAACACCTA ACCTTCTCAGAATCGTGGGCTGAACTAGCTGCCGCGTTTTCGTCGAAATG AACAGAGCCAACGTGCGCCGCCGGCATTCCCGGGATTCTTAAAAACGACG TCTGCTGCCCGACCAGCTGTGGTGCTTGCGGAGGTACGTGGATCACCTTC GTCTGTCCTTGACTGCCTAGGTCGGGTCATCAACGTGCAGGGTCAGTGTC GCGTGTCATGTTCACATGGGCCACGCCTAATCGTCGTTGTACCCTGCACA AGCTCTGCCGCTGCGTTCATCCCGCACATATTTTGTTCAGGTATCGGCTG TAATGGAAGAAACGGCGGTGACGACTTCACCGGCAGAGAAGCCTGCTGCC AAAGTGGAGTCACAACGCTGGGGCGCATATGCTCAGCCACCGTCGGAGCC CCTTGTGTCGTCGGGGAAGGTGCGGTGTCGGATTCACATGCAAGCACTCA CATCGAGGCGTGAGCAAGAGAGCAAGTGGCATTGTTCTGCTTCGGTTCGG AAAAATATGCAAACTTTGATGCCGCAGTAGTGACAACGAGGACATACACC GTCGAAGGTTACCGGTGTTGGTATTGGCCAGTAGAGTCAGAAATCGTCTG TCCGCTGCACCGAAGATCGACAAACTTCGTTCTTAGTCATGGTCGAGTTT CGAATGTAGCACTGAGCAACGGAGTACTAACGTTCAGTTGAAACCTGGAA CGACGAACCCCATGCACAACACAGGCACTTCACGTGTCTTCACGCCTCTG TGCACTACTTTCTGGCTGTTCTTGTTTTGTTGTTGCGGTCATCTGCTCCA TTCGGTTGGAACCCCTGCGGTCTCTAGAAAATGCTGATACTGTAATGCCA ATGAATGGACAACAGCCTCACCAGCGCACCCCAGCACGCGTCACGGAACG TCGTATGTGAGGTTGGCCGTAGTTCTTGCTTGACAACTGAGTTCCCGTCT CAAGCAAAATGCAGCAATACTTCACCCTCTCAAAATATTGCGCTGAACTA CGTAGCCTCCGCTTTGCTGTCGAGATAAACAGAGCCAACGTGCGCCGCCG GCATTCCCGGGATTCTTAAAGACGACGTCTGCTGTCCAACCAGCTGTGGT GCTTGCGGAGGTACGTGGGTCAACGTTGTCTGTCCTTGACAGCCGAGGTC GGGTCATCAACATGCAGGGTCAGTGTCGTGTCATGTTCACCTGGTTCACG CCTAATCGTCGTTGTACCCTGCACAAGCTCTGCCGCTGCGTACATCCTGC ACATATTGGGTTCAGGTTCCCACTGTAATGGAAGAAACGGCGGTGACGAC TTCACCGGCAGAGAAGCCTGCTGCCAAAGTGGAGTAACCACGCTGGGGCG CATATGCTCAGC
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Coding sequence (CDS) from alignment at S-firma_F_contig1049:20792..24703-

>mRNA_S-firma_F_contig1049.688.1 ID=mRNA_S-firma_F_contig1049.688.1|Name=mRNA_S-firma_F_contig1049.688.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1572bp|location=Sequence derived from alignment at S-firma_F_contig1049:20792..24703- (Sphaerotrichia firma ET2_F female)
TGCGCCGCCGGCATTCCCGGGATTCTTAACGACGACGTCTGCTGCCCAAC
CAGCTGTGGTGCTTGCGGAGTGCGCCGCCGGCATTCCCGGGATTCTTAAC
GACGACGTCTGCTGCCCAACCAGCTGTGGTGCTTGCGGAGGCTCCGGTTG
TAGTGGAAGAAACGGCGGTGACGACTTCACCGGTAAGGAAGCCTGCTGCG
TAGGAGGCGTCACAACGCTGGGGCGCGTATGCTCAGCTACCGTCGGAACT
CCCTGTGTCATCGCGGAAGGCTCCGGTTGTAGTGGAAGAAACGGCGGTGA
CGACTTCACCGGTAAGGAAGCCTGCTGCGTAGGAGGCGTCACAACGCTGG
GGCGCGTATGCTCAGCTACCGTCGGAACTCCCTGTGTCATCGCGGAAGAC
CAAATGTGCGCCGCCGGCATTCCCGGGATTCTTAACGACGACGTCTGCTG
CCCGACCAGCTGTGGTGCTTGCGGAGACCAAATGTGCGCCGCCGGCATTC
CCGGGATTCTTAACGACGACGTCTGCTGCCCGACCAGCTGTGGTGCTTGC
GGAGGTTCCGGTTGTAATGGAAGAAACGGCGGTGACGACTTCACCGGCAG
AGAAGCCTGCTGCGTAGGAGGCGTCACAACGCTGGGGCGCGTATGCTCAG
CTACCGTCGGAGCCCCTTGTGTCGTCGCGGAAGGTTCCGGTTGTAATGGA
AGAAACGGCGGTGACGACTTCACCGGCAGAGAAGCCTGCTGCGTAGGAGG
CGTCACAACGCTGGGGCGCGTATGCTCAGCTACCGTCGGAGCCCCTTGTG
TCGTCGCGGAAGAGCCAACGTGCGCCGCCGGCATTCCCGGGATTCTTAAA
AACGACGTCTGCTGCCCGACCAGCTGTGGTGCTTGCGGAGAGCCAACGTG
CGCCGCCGGCATTCCCGGGATTCTTAAAAACGACGTCTGCTGCCCGACCA
GCTGTGGTGCTTGCGGAGGTATCGGCTGTAATGGAAGAAACGGCGGTGAC
GACTTCACCGGCAGAGAAGCCTGCTGCCAAAGTGGAGTCACAACGCTGGG
GCGCATATGCTCAGCCACCGTCGGAGCCCCTTGTGTCGTCGGGGAAGGTA
TCGGCTGTAATGGAAGAAACGGCGGTGACGACTTCACCGGCAGAGAAGCC
TGCTGCCAAAGTGGAGTCACAACGCTGGGGCGCATATGCTCAGCCACCGT
CGGAGCCCCTTGTGTCGTCGGGGAAGAGCCAACGTGCGCCGCCGGCATTC
CCGGGATTCTTAAAGACGACGTCTGCTGTCCAACCAGCTGTGGTGCTTGC
GGAGAGCCAACGTGCGCCGCCGGCATTCCCGGGATTCTTAAAGACGACGT
CTGCTGTCCAACCAGCTGTGGTGCTTGCGGAGGTTCCCACTGTAATGGAA
GAAACGGCGGTGACGACTTCACCGGCAGAGAAGCCTGCTGCCAAAGTGGA
GTAACCACGCTGGGGCGCATATGCTCAGTTCCCACTGTAATGGAAGAAAC
GGCGGTGACGACTTCACCGGCAGAGAAGCCTGCTGCCAAAGTGGAGTAAC
CACGCTGGGGCGCATATGCTCA
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