mRNA_S-firma_F_contig1049.688.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI) HSP 1 Score: 236 bits (603), Expect = 2.050e-70 Identity = 138/296 (46.62%), Postives = 156/296 (52.70%), Query Frame = 1
Query: 1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIAEDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPT-----------------CAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVVGEEPT-----------------CAAGIPGILKDDVCCPTSCGACGGSHCNGRNGGDDFTGREACCQSGVTTLGRICS 786
C GI GI DVCC SCG+CGG+GCSGR+GG ACC GGV GR CS T PC+ MC GI GI DVCC SCG+C G+GC+GR+GG ACC GGV GR CS T APC+ PT C GI GI +DVCC SCG+CGG GC+ R+GG ACC GV GR CS T APC+ G PT C GI GI DVCC TSCG+CGG+ C+GR+GG ACC GV GR CS
Sbjct: 46 CDGGIVGIQTSDVCCSASCGSCGGTGCSGRDGG-----SGACCGGGVRASGRYCSVTGEAPCMTVP--MCDGGIVGIQASDVCCSASCGSCAGTGCSGRDGGSG-----ACCGGGVQASGRYCSVTGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQTSDVCCSASCGSCGGTGCSSRDGGSG-----ACCGGGVRASGRYCSVTGEAPCMTGAAPTPEXXXXXXXXXTVEVPMCDGGIVGIQTSDVCCSTSCGSCGGTGCSGRDGGSG-----ACCGGGVRASGRYCS 319
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI) HSP 1 Score: 241 bits (616), Expect = 7.400e-70 Identity = 142/313 (45.37%), Postives = 161/313 (51.44%), Query Frame = 1
Query: 1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIA-----------------EDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPT-----------------CAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVVGEEPT-----------------CAAGIPGILKDDVCCPTSCGACGGSHCNGRNGGDDFTGREACCQSGVTTLGRICS 786
C GI GI + DVCC SCG+CGGSGCS R+GG E+CC GGV GR CS T PC+ + E MC GI GI DVCC SCG+CGGSGC GR+GG E+CC GGV GR CS T APC+ PT C GI GI +DVCC SCG+CGG GC GR+GG E+CC GV GR CS T APC+ G PT C GI GI DVCC SCG+CGGS C+GR+GG E+CC GV GR CS
Sbjct: 77 CDGGIVGIQSSDVCCSASCGSCGGSGCSSRDGG-----SESCCGGGVRASGRYCSVTGEAPCMTSPAPTXXXXXXXXXXXXXEIPMCDGGIVGIQTSDVCCSASCGSCGGSGCTGRDGGS-----ESCCGGGVRASGRYCSITGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCTGRDGGS-----ESCCGGGVRASGRYCSITGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCSGRDGGS-----ESCCGGGVRGSGRYCS 369
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE) HSP 1 Score: 230 bits (586), Expect = 2.920e-67 Identity = 135/296 (45.61%), Postives = 153/296 (51.69%), Query Frame = 1
Query: 1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIAEDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPT-----------------CAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVVGEEPT-----------------CAAGIPGILKDDVCCPTSCGACGGSHCNGRNGGDDFTGREACCQSGVTTLGRICS 786
C I GI + DVCC SCG+CGGSGC+GR+GG E+CC GGV GR CS T PC+ MC I GI + DVCC SCG+CGGSGC R+GG E+CC GGV GR CS T APC+ PT C I GI +DVCC SCG+CGG GC R+GG E+CC GV GR CS T APC+ G PT C I GI DVCC SCG CGGS C GR+GG E+CC GV GR CS
Sbjct: 2 CDGDIVGIQSSDVCCSASCGSCGGSGCTGRDGG-----SESCCGGGVRASGRYCSITGEAPCMTVP--MCDGDIVGIQSSDVCCSASCGSCGGSGCTERDGGS-----ESCCGGGVRASGRYCSITGEAPCMTGPAPTPDXXXXXXXXXTVEVPMCDGDIVGIQSSDVCCSASCGSCGGSGCTERDGGS-----ESCCGGGVRASGRYCSITGEAPCMTGPAPTPDXXXXXXXXXTVEVPMCDGDIVGIQSSDVCCSASCGTCGGSGCTGRDGGS-----ESCCGGGVRASGRYCS 275
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE) HSP 1 Score: 219 bits (558), Expect = 1.700e-64 Identity = 134/320 (41.88%), Postives = 157/320 (49.06%), Query Frame = 1
Query: 13 IPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVC----------SATV---GTPCVIAEDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPT--------------------------------CAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVVGEEPT-----------------CAAGIPGILKDDVCCPTSCGACGGSHCNGRNGGDDFTGREACCQSGVTTLGRICS 786
I GI N DVCCP SCG CG GCS GG +CC V G C S+T TP +E MC GI GI +VCC SCG+CGG GC+GR+GG D ACC GGVT GR+CS T APC+ PT C GI GI +VCC SCG+CGG+GC+GR+GG D ACC GVT GR+C+ T APC+ G PT C GI GI +VCC SCG+CGG C+GR+GG D ACC GVT GR+C+
Sbjct: 66 ISGIQNKDVCCPVSCGMCGDEGCSTAPGG-----AASCCTTNVLDAGIECGEAPCVIDASSSTTPAPATPAPTSEVPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSD-----ACCGGGVTASGRLCSVTGEAPCITGPAPTPAPSPPXTVEGPAPTLEPXXXXXXPPAGEVPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSD-----ACCGGGVTASGRLCAVTGEAPCITGPAPTPEXXXXXXXXXTVEVPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSD-----ACCGGGVTASGRLCA 365
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI) HSP 1 Score: 192 bits (487), Expect = 1.290e-56 Identity = 106/219 (48.40%), Postives = 123/219 (56.16%), Query Frame = 1
Query: 1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIA-----------------EDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPTCAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVV 606
C GI GI D+ C +SCG+CGG+GC+ R+GG EACC GGV GR CS T PC+ E MC GI GI D+CC +SCG+CGG+GC R+GG EACC GGV GR CS T APC+ E P C GI GI ++DVCC SCG+CGG GC R+GG EACC GV GR CS T APCVV
Sbjct: 64 CDGGIVGIQQSDISCSSSCGSCGGTGCTSRDGG-----SEACCGGGVRASGRYCSVTGEAPCMTGPAPTPEXXXXXXXXXTDEVSMCDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGS-----EACCGGGVRASGRYCSVTGEAPCMTNEVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGS-----EACCGGGVRASGRDCSVTGEAPCVV 267
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI) HSP 1 Score: 193 bits (491), Expect = 2.110e-54 Identity = 106/219 (48.40%), Postives = 123/219 (56.16%), Query Frame = 1
Query: 1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIA-----------------EDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPTCAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVV 606
C GI GI D+CC +SCG+CGG+GC+ R+GG EACC GGV GR CS T PC+ E MC GI GI D+CC + CG+CGG+GC R+GG EACC GGV GR CS T APC+ E P C GI GI ++DVCC SCG+CGG GC R+GG EACC GV GR CS T APCVV
Sbjct: 25 CDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGG-----SEACCGGGVRASGRFCSVTGEAPCMTGPAPTPXXXXXXXXXXTDEVPMCDGGIVGIQQSDICCSSRCGSCGGTGCTSRDGGS-----EACCGGGVRASGRYCSVTGEAPCMTNEVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGS-----EACCGGGVRASGRDCSVTGEAPCVV 228
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE) HSP 1 Score: 189 bits (481), Expect = 3.130e-51 Identity = 115/245 (46.94%), Postives = 132/245 (53.88%), Query Frame = 1
Query: 1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIAE---------------DQ----MCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPT-----------------CAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVV--GEEPT 621
C GI GI + DVCC SCG+CGG+GC+GR+GG D ACC GGV + GR CS T PC+ D+ MC GI GI + DVCC +SCG+CGGSGC GR+GG+D ACC GGV GR CS T APC+ PT C GI GI +DVCC SCG+CGG GC R+GG D ACC GV GR CS T APCVV G PT
Sbjct: 53 CDGGIVGIQSSDVCCSLSCGSCGGTGCTGRDGGAD-----ACCGGGVRSSGRFCSVTGEAPCITGPAPTPEPTXXXXXXXXDEGAVPMCDGGIVGIQSSDVCCTSSCGSCGGSGCTGRDGGED-----ACCGGGVRASGRYCSVTGEAPCMTGPAPTPXXXXXXXXXXTEEVPMCDGGIVGIQSSDVCCSLSCGSCGGTGCTVRDGGAD-----ACCGGGVRASGRDCSVTGEAPCVVTSGVPPT 282
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE) HSP 1 Score: 176 bits (447), Expect = 2.030e-49 Identity = 107/236 (45.34%), Postives = 120/236 (50.85%), Query Frame = 1
Query: 1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIA-----------------EDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVAEEPT-----------------CAAGIPGILKNDVCCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVV 606
C GI GI DVCC SCG+CGGSGCSGR+GG D ACC GGV GR CS T PC+ E MC I GI DVCC SCG+CGGSGC+GR+GG D ACC GGV GR CS T APC+ PT C GI GI +DVCC SCG+ C GR+GG D ACC GV G +CS T APC++
Sbjct: 180 CEGGIAGIQASDVCCSVSCGSCGGSGCSGRDGGSD-----ACCGGGVRASGRFCSITEEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGEIVGIQASDVCCSASCGSCGGSGCSGRDGGSD-----ACCGGGVRASGRFCSVTGEAPCMTGPAPTTEPTXXXXXXXTVEVPMCDGGIVGIQASDVCCSASCGSXXXXXCTGRDGGPD-----ACCGGGVRASGLLCSVTGEAPCLL 400
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: H6WBB4_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB4_VAULI) HSP 1 Score: 115 bits (287), Expect = 3.270e-26 Identity = 95/277 (34.30%), Postives = 124/277 (44.77%), Query Frame = 1
Query: 40 CCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIAEDQMCAAGIPGI-------LNDDV---CCPTSCGACGGSGCNGRNGGDDFTGREACCVGGVTTLGRVCSATVGAPCVVA-----------EEPTCAAGIPGILKNDV----CCPTSCGACGGIGCNGRNGGDDFTGREACCQSGVTTLGRICSATVGAPCVVGEE------PTCAAGIP-GILKDDV---CCPTSCGACGGSHCNGRNGGDDFTGREACCQSGVT 765
CCP+SCG CGG GC R GGD +CC + T CS G PC IA+ M +P + ++D CCP++CG CGG+GC+ R GGD CC G VT CS PC+++ +P + P D CCP +CGACGG GC+ R GG CC +T + CS + PC+ ++ P + P G + D CCP CG CGG C+ R GG +CC VT
Sbjct: 40 CCPSSCGTCGGEGCYMRPGGD-----MSCCTSKIETP---CSKGSGPPCKIADYNMPPPPMPPMDKCPKESISDSTGKYCCPSTCGQCGGAGCDKRPGGD-----VKCCTGKVTNS---CS-MAKPPCMISGGHTPPTPPPTNKPPASGKCPHESIPDSSGMKCCPATCGACGGFGCDKRPGG-----AMMCCTGNIT---KSCSMSAP-PCIASDDKPYPPMPPSSGKCPDGSIPDASGMKCCPMKCGTCGGLGCDMRPGG-----AASCCTGSVT 285
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Match: A0A6H5JVK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK3_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 3.920e-19 Identity = 54/118 (45.76%), Postives = 59/118 (50.00%), Query Frame = 1
Query: 1 CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLGRVCSATVGTPCVIA-----------------EDQMCAAGIPGILNDDVCCPTSCGACGGSGCNGRNG 303
C GI GI DVCC SCG+CGGSGCSGR+GG D ACC GGV GR CS T PC+ E MC GI GI DVCC SCG+ GR+G
Sbjct: 2 CDGGIVGIQASDVCCSASCGSCGGSGCSGRDGGSD-----ACCGGGVRASGRFCSVTGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQASDVCCSASCGSXXXXXXXGRDG 114 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1049.688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1049.688.1 >prot_S-firma_F_contig1049.688.1 ID=prot_S-firma_F_contig1049.688.1|Name=mRNA_S-firma_F_contig1049.688.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=262bp CAAGIPGILNDDVCCPTSCGACGGSGCSGRNGGDDFTGKEACCVGGVTTLback to top mRNA from alignment at S-firma_F_contig1049:20792..24703- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1049.688.1 ID=mRNA_S-firma_F_contig1049.688.1|Name=mRNA_S-firma_F_contig1049.688.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3912bp|location=Sequence derived from alignment at S-firma_F_contig1049:20792..24703- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1049:20792..24703- >mRNA_S-firma_F_contig1049.688.1 ID=mRNA_S-firma_F_contig1049.688.1|Name=mRNA_S-firma_F_contig1049.688.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1572bp|location=Sequence derived from alignment at S-firma_F_contig1049:20792..24703- (Sphaerotrichia firma ET2_F female)back to top |