mRNA_S-firma_F_contig10464.656.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A7S2G8M0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G8M0_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.950e-34 Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1
Query: 1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKEV 216
+C RW+NHLDP+IK+ WSD EE IIYDAQ RLGNKWA+IA LLPGRTDNAIKNHWYSTMRRNMRR+AKE+
Sbjct: 93 QCRTRWLNHLDPAIKKEPWSDTEEHIIYDAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRRLAKEI 164
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A7S2ST59_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST59_9STRA) HSP 1 Score: 128 bits (321), Expect = 6.470e-34 Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 1
Query: 1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKEVT 219
+C RW+NHLDP+IK+ WS+ EE IIYDAQ+RLGNKWA+IA LLPGRTDNAIKNHWYSTMRRNMRR+AKE++
Sbjct: 82 QCRTRWLNHLDPAIKKEPWSEHEERIIYDAQQRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRRLAKEIS 154
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A7S3JRY5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRY5_9STRA) HSP 1 Score: 124 bits (312), Expect = 4.670e-33 Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 1
Query: 1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKE 213
+C RW+NHLDP+I+R WSDAEE IIY+AQ+ +GNKWA+IA LLPGRTDNAIKNHWYSTMRRNMRR+AKE
Sbjct: 57 QCRTRWLNHLDPTIRREPWSDAEENIIYNAQQTIGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRRMAKE 127
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A7S3ZTY8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTY8_9STRA) HSP 1 Score: 124 bits (312), Expect = 1.220e-32 Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 1
Query: 1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKEV 216
+C RW+NHLDP IKR WS+ EE +IY+AQ+RLGNKWA+IA LLPGRTDNAIKNHWYSTMRRNMRR+AK++
Sbjct: 80 QCRTRWLNHLDPGIKREPWSEQEENVIYEAQQRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRRLAKDL 151
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: F0Y4P7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4P7_AURAN) HSP 1 Score: 117 bits (293), Expect = 2.550e-32 Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 1
Query: 1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNM 195
+C RW+NHLDP+IKR WS+ EE++IY+AQ RLGNKWA+IA LLPGRTDNAIKNHWYSTMRRNM
Sbjct: 68 QCRTRWLNHLDPAIKREPWSEGEESVIYEAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNM 132
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A835ZPI2_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPI2_9STRA) HSP 1 Score: 116 bits (290), Expect = 4.310e-32 Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1
Query: 1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAK 210
+C RW+NHLDPS++R W+D EE +IY+AQ+RLGNKWA+IA LL GRTDNAIKNHWYSTMR+NMRR K
Sbjct: 45 QCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRRRQK 114
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A7S3NIV5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIV5_9STRA) HSP 1 Score: 121 bits (304), Expect = 4.990e-31 Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 1
Query: 1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKE 213
+C RW+NHLDP IKR WS+AEE IIY+AQ LGNKWA+IA LPGRTDNAIKNHWYSTMRRNMRR+AKE
Sbjct: 64 QCRTRWLNHLDPDIKREPWSEAEENIIYEAQNVLGNKWAEIAKKLPGRTDNAIKNHWYSTMRRNMRRMAKE 134
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A1V9ZB05_9STRA (Myb-like DNA-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZB05_9STRA) HSP 1 Score: 120 bits (302), Expect = 1.220e-30 Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 1
Query: 1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKEVTK 222
+C RW+NHLDPSIK+ W+ EE+II DAQ RLGNKWA+I+ LLPGRTDNAIKNHWYS+MRR MRRIAK+V K
Sbjct: 64 QCRTRWLNHLDPSIKKDPWTTEEESIIEDAQNRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQVNK 137
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A067CEV9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CEV9_SAPPC) HSP 1 Score: 120 bits (302), Expect = 1.230e-30 Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 1
Query: 1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKEVTK 222
+C RW+NHLDPSIK+ W+ EE+II DAQ RLGNKWA+I+ LLPGRTDNAIKNHWYS+MRR MRRIAK+V K
Sbjct: 63 QCRTRWLNHLDPSIKKDPWTTEEESIIEDAQNRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQVNK 136
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A1V9ZMK9_9STRA (Myb-like DNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMK9_9STRA) HSP 1 Score: 120 bits (302), Expect = 1.400e-30 Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 1
Query: 1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKEVTK 222
+C RW+NHLDPSIK+ W+ EE+II DAQ RLGNKWA+I+ LLPGRTDNAIKNHWYS+MRR MRRIAK+V K
Sbjct: 62 QCRTRWLNHLDPSIKKDPWTTEEESIIEDAQNRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQVNK 135 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10464.656.1 >prot_S-firma_F_contig10464.656.1 ID=prot_S-firma_F_contig10464.656.1|Name=mRNA_S-firma_F_contig10464.656.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=74bp RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDback to top mRNA from alignment at S-firma_F_contig10464:4845..5066- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10464.656.1 ID=mRNA_S-firma_F_contig10464.656.1|Name=mRNA_S-firma_F_contig10464.656.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=222bp|location=Sequence derived from alignment at S-firma_F_contig10464:4845..5066- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10464:4845..5066- >mRNA_S-firma_F_contig10464.656.1 ID=mRNA_S-firma_F_contig10464.656.1|Name=mRNA_S-firma_F_contig10464.656.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=444bp|location=Sequence derived from alignment at S-firma_F_contig10464:4845..5066- (Sphaerotrichia firma ET2_F female)back to top |