mRNA_S-firma_F_contig10464.656.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10464.656.1
Unique NamemRNA_S-firma_F_contig10464.656.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A7S2G8M0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G8M0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.950e-34
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1
Query:    1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKEV 216
            +C  RW+NHLDP+IK+  WSD EE IIYDAQ RLGNKWA+IA LLPGRTDNAIKNHWYSTMRRNMRR+AKE+
Sbjct:   93 QCRTRWLNHLDPAIKKEPWSDTEEHIIYDAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRRLAKEI 164          
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A7S2ST59_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST59_9STRA)

HSP 1 Score: 128 bits (321), Expect = 6.470e-34
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 1
Query:    1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKEVT 219
            +C  RW+NHLDP+IK+  WS+ EE IIYDAQ+RLGNKWA+IA LLPGRTDNAIKNHWYSTMRRNMRR+AKE++
Sbjct:   82 QCRTRWLNHLDPAIKKEPWSEHEERIIYDAQQRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRRLAKEIS 154          
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A7S3JRY5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRY5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.670e-33
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 1
Query:    1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKE 213
            +C  RW+NHLDP+I+R  WSDAEE IIY+AQ+ +GNKWA+IA LLPGRTDNAIKNHWYSTMRRNMRR+AKE
Sbjct:   57 QCRTRWLNHLDPTIRREPWSDAEENIIYNAQQTIGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRRMAKE 127          
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A7S3ZTY8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTY8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.220e-32
Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 1
Query:    1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKEV 216
            +C  RW+NHLDP IKR  WS+ EE +IY+AQ+RLGNKWA+IA LLPGRTDNAIKNHWYSTMRRNMRR+AK++
Sbjct:   80 QCRTRWLNHLDPGIKREPWSEQEENVIYEAQQRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRRLAKDL 151          
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: F0Y4P7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4P7_AURAN)

HSP 1 Score: 117 bits (293), Expect = 2.550e-32
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 1
Query:    1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNM 195
            +C  RW+NHLDP+IKR  WS+ EE++IY+AQ RLGNKWA+IA LLPGRTDNAIKNHWYSTMRRNM
Sbjct:   68 QCRTRWLNHLDPAIKREPWSEGEESVIYEAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNM 132          
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A835ZPI2_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPI2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.310e-32
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAK 210
            +C  RW+NHLDPS++R  W+D EE +IY+AQ+RLGNKWA+IA LL GRTDNAIKNHWYSTMR+NMRR  K
Sbjct:   45 QCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRRRQK 114          
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A7S3NIV5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIV5_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.990e-31
Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 1
Query:    1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKE 213
            +C  RW+NHLDP IKR  WS+AEE IIY+AQ  LGNKWA+IA  LPGRTDNAIKNHWYSTMRRNMRR+AKE
Sbjct:   64 QCRTRWLNHLDPDIKREPWSEAEENIIYEAQNVLGNKWAEIAKKLPGRTDNAIKNHWYSTMRRNMRRMAKE 134          
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A1V9ZB05_9STRA (Myb-like DNA-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZB05_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.220e-30
Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 1
Query:    1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKEVTK 222
            +C  RW+NHLDPSIK+  W+  EE+II DAQ RLGNKWA+I+ LLPGRTDNAIKNHWYS+MRR MRRIAK+V K
Sbjct:   64 QCRTRWLNHLDPSIKKDPWTTEEESIIEDAQNRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQVNK 137          
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A067CEV9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CEV9_SAPPC)

HSP 1 Score: 120 bits (302), Expect = 1.230e-30
Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 1
Query:    1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKEVTK 222
            +C  RW+NHLDPSIK+  W+  EE+II DAQ RLGNKWA+I+ LLPGRTDNAIKNHWYS+MRR MRRIAK+V K
Sbjct:   63 QCRTRWLNHLDPSIKKDPWTTEEESIIEDAQNRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQVNK 136          
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Match: A0A1V9ZMK9_9STRA (Myb-like DNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMK9_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.400e-30
Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 1
Query:    1 RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTDNAIKNHWYSTMRRNMRRIAKEVTK 222
            +C  RW+NHLDPSIK+  W+  EE+II DAQ RLGNKWA+I+ LLPGRTDNAIKNHWYS+MRR MRRIAK+V K
Sbjct:   62 QCRTRWLNHLDPSIKKDPWTTEEESIIEDAQNRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQVNK 135          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10464.656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2G8M0_9STRA1.950e-3479.17Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A7S2ST59_9STRA6.470e-3476.71Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3JRY5_9STRA4.670e-3377.46Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3ZTY8_9STRA1.220e-3275.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y4P7_AURAN2.550e-3276.92Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A835ZPI2_9STRA4.310e-3271.43Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A7S3NIV5_9STRA4.990e-3177.46Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1V9ZB05_9STRA1.220e-3072.97Myb-like DNA-binding protein n=1 Tax=Thraustotheca... [more]
A0A067CEV9_SAPPC1.230e-3072.97Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZMK9_9STRA1.400e-3072.97Myb-like DNA-binding protein n=1 Tax=Achlya hypogy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10464contigS-firma_F_contig10464:4845..5066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog112098.XP_008608150.1
PFAMsMyb_DNA-binding
Max annot lvl2759|Eukaryota
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
Evalue1.96e-31
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
BRITEko00000,ko00001,ko03000
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.0299077-CDS-S-firma_F_contig10464:4844..50661622815581.0299077-CDS-S-firma_F_contig10464:4844..5066Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10464 4845..5066 -
1696949432.0395699-CDS-S-firma_F_contig10464:4844..50661696949432.0395699-CDS-S-firma_F_contig10464:4844..5066Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10464 4845..5066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10464.656.1prot_S-firma_F_contig10464.656.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10464 4845..5066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10464.656.1

>prot_S-firma_F_contig10464.656.1 ID=prot_S-firma_F_contig10464.656.1|Name=mRNA_S-firma_F_contig10464.656.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=74bp
RCPPRWINHLDPSIKRGAWSDAEEAIIYDAQKRLGNKWAQIAALLPGRTD
NAIKNHWYSTMRRNMRRIAKEVTK
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mRNA from alignment at S-firma_F_contig10464:4845..5066-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10464.656.1 ID=mRNA_S-firma_F_contig10464.656.1|Name=mRNA_S-firma_F_contig10464.656.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=222bp|location=Sequence derived from alignment at S-firma_F_contig10464:4845..5066- (Sphaerotrichia firma ET2_F female)
CGTTGTCCCCCCAGATGGATCAACCACTTGGACCCGTCCATCAAGAGGGG GGCGTGGTCTGACGCCGAGGAGGCCATAATTTACGACGCCCAAAAGAGGC TGGGGAACAAGTGGGCACAAATTGCGGCGCTGCTGCCCGGCCGCACGGAC AACGCGATTAAGAACCACTGGTACTCCACCATGCGCCGCAACATGCGGCG GATTGCAAAGGAGGTCACGAAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10464:4845..5066-

>mRNA_S-firma_F_contig10464.656.1 ID=mRNA_S-firma_F_contig10464.656.1|Name=mRNA_S-firma_F_contig10464.656.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=444bp|location=Sequence derived from alignment at S-firma_F_contig10464:4845..5066- (Sphaerotrichia firma ET2_F female)
CGTTGTCCCCCCAGATGGATCAACCACTTGGACCCGTCCATCAAGAGGGG
GGCGTGGTCTGACGCCGAGGAGGCCATAATTTACGACGCCCAAAAGAGGC
TGGGGAACAAGTGGGCACAAATTGCGGCGCTGCTGCCCGGCCGCACGGAC
AACGCGATTAAGAACCACTGGTACTCCACCATGCGCCGCAACATGCGGCG
GATTGCAAAGGAGGTCACGAAACGTTGTCCCCCCAGATGGATCAACCACT
TGGACCCGTCCATCAAGAGGGGGGCGTGGTCTGACGCCGAGGAGGCCATA
ATTTACGACGCCCAAAAGAGGCTGGGGAACAAGTGGGCACAAATTGCGGC
GCTGCTGCCCGGCCGCACGGACAACGCGATTAAGAACCACTGGTACTCCA
CCATGCGCCGCAACATGCGGCGGATTGCAAAGGAGGTCACGAAA
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