mRNA_S-firma_F_contig1043.615.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1043.615.1
Unique NamemRNA_S-firma_F_contig1043.615.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1043.615.1 vs. uniprot
Match: D8LJD6_ECTSI (Ribosomal protein L11 methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJD6_ECTSI)

HSP 1 Score: 581 bits (1498), Expect = 2.900e-199
Identity = 306/443 (69.07%), Postives = 338/443 (76.30%), Query Frame = 2
Query:   98 SGWLGFV------PSSSFGTHPH-ITGRARPRWL----RQPQQSRVAPRP----AWLSTDVNEAERQEPVDELWWEEGGGVQSLEIRCRGANGDDLDPWFLSELLMDIGAMSVSVDDSALGTQEESPLLHEHIQSKAFDPRVPLPSTSGRKDMWGGTSRVVALFPVKWDLTGVVASVEEVXXXXXXXXXXXXXXXXXXXATSSQEGWDPIEVGRLRIRFPWHPALPPSELRPDQVELELEGGRAFGTGEHPTTSMCCTWLEGNVEGQRVLDYGSGSGILGLASLSFGAKEAVGVELDLSAIASAATNAARNGLKMDTYHPQEVGSGKGIDLVLTKLAVSEEMDRSLPKDAMDAMEPLSVADGIAISPEELGKFDVTVANILAAPIMRLQPIFAYFTRPGGKLALSGVLEEQADAVLAAYGDKFDLEVTETMGGWVRISGLRRG 1381
            S W  F+      PS+ F  H H +  R+  R      R+P  +   PRP    A    DVN A +Q  VDELWWEEGG VQSLEI CR A G +LDPWFLSELLMD+GAMSVSVDD+ LGT  E PLLHEH  SKAFDP VPLPS SGRKDMWGG+SRVVALFP +WDL GVVA+VEEV                     + QEGWDPIEVGRLRIRFPWH  LPPSEL+P QVELELEGGR+FGTGEHPTTSMCCTWLE NV GQRVLDYGSGSGILGLA+LSFGA EAVGVELDLSAIASAA NAA NGLKMDTY+PQEVG+G G+DLVLTKLAVSE   ++  + + DAMEP SVADG  IS EELG FDVTVANILA PI+RLQP+FAY TRPGGKLALSGVL+EQA AVL+AY + FDLEVTE+MGGWV +SG+RRG
Sbjct:    9 SSWQAFLVSSLILPSTPFVNHAHQLPSRSSSRSCAMNRRRPSPTTAIPRPLPSLATADADVNAAGQQSAVDELWWEEGGAVQSLEIACRDAKGSELDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVATVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHTPLPPSELKPGQVELELEGGRSFGTGEHPTTSMCCTWLEDNVAGQRVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYPQEVGTGDGLDLVLTKLAVSE---KATEEPSEDAMEPPSVADGFPISTEELGAFDVTVANILAGPIIRLQPVFAYLTRPGGKLALSGVLQEQAGAVLSAYAESFDLEVTESMGGWVLLSGVRRG 448          
BLAST of mRNA_S-firma_F_contig1043.615.1 vs. uniprot
Match: A0A835Z7L3_9STRA (Ribosomal protein L11 methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7L3_9STRA)

HSP 1 Score: 268 bits (684), Expect = 2.450e-78
Identity = 156/373 (41.82%), Postives = 209/373 (56.03%), Query Frame = 2
Query:  272 WWEEGGGVQSLEIRCRGANGDDLDPWFLSELLMDIGAMSVSVDDSALGTQEESPLLHEHIQSKAFDPRVPLPSTSGRKDMWGGTSRVVALFPVKWDLTGVVASVEEVXXXXXXXXXXXXXXXXXXXATSSQEGWDPIEVGRLRIRFPWHPALPPSELRPDQVELELEGGRAFGTGEHPTTSMCCTWLEGNVE---GQRVLDYGSGSGILGLASLSFGAKEAVGVELDLSAIASAATNAARNGLKMDTYHPQEVGSGKGIDLVLTKLAVSEEMDRSLPKDAMDAMEPLSVADGIAISPEELGKFDVTVANILAAPIMRLQPIFAYFTRPGGKLALSGVLEEQADAVLAAYGDKF-DLEVTETMGGWVRISGLRR 1378
            WW E   +++L I C    G+ LD   L   L ++GA+SV+ +D+A GT +E PLLHEH  S   +      + +   + W  T+ V A FP  W+L G +  +E+V                     S Q+ W PI +G LRIRFPWH AL        QVEL LEGGRAFGTGEHPTT MCCTWLE  ++   G RVLDYGSGSG+LGLA+L +GA EA+G+E+D+ AI S+  NA  N L +  YHP+EV + +G            +++R   +    A  P   A G  +   E   FD+TVANILA  ++R +P  +  TR GG LA+SGVL  QAD V+ AY   F D+ + E  G WV I+  ++
Sbjct:   59 WWGEDTQLKALRIPCSDCKGNVLDAGTLMGFLSEVGALSVTAEDAARGTDQEIPLLHEHDASLGLE--TTWTNIASGSEYWANTT-VTAHFPRDWELQGTIDMIEQVFNLPCALSFSVDDIQDKDWVKSVQQTWHPITLGNLRIRFPWHDALNEDSAGTGQVELCLEGGRAFGTGEHPTTRMCCTWLERCLQVSPGARVLDYGSGSGLLGLAALKYGASEAIGIEVDVDAILSSLYNAQMNDLDIKFYHPREVLNDEG------------QVERVEFRQIQAAAAPAGFAAGPVVQQLE-HPFDLTVANILAGCLIRTEPAISAMTRSGGLLAMSGVLHYQADEVMKAYSKHFYDIMIAEQDGEWVLITATKK 415          
BLAST of mRNA_S-firma_F_contig1043.615.1 vs. uniprot
Match: A0A6V1NRU4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRU4_HETAK)

HSP 1 Score: 224 bits (572), Expect = 1.700e-61
Identity = 148/416 (35.58%), Postives = 206/416 (49.52%), Query Frame = 2
Query:  290 GVQSLEIRCRGANGDDLDPWFLSELLMDIGAMSVSVDDSALGTQEESPLLHEH---------IQSKAFDPRVPLPSTSGR----KDMWGGTSRVVALFPVKWDLTGVVASVEEVXXXXXXXXXXXXXXXXXXXATSSQEGWDPIEVGRLRIRFPWHPALPPSE-----------------LRP--DQVELE----------------LEGGRAFGTGEHPTTSMCCTWLEGNVE----GQRVLDYGSGSGILGLASLSFGAKEAVGVELDLSAIASAATNAARNGLKMDTYHPQEV-GSGKGIDLVLTKLAVSEEMDRSLPKDAMDAMEPLSVADGIAISPEELGKFDVTVANILAAPIMRLQPIFAYFTRPGGKLALSGVLEEQADAVLAAYGDKFD-LEVTETMGGWVRISGLR 1375
            G+++L I CR  +G+DLDP  LS+ LM+IGA SVS++DS  GT  E+P+  E            + A  P   L +T+      + +W   SRVVA  P  W+   VV  V                       ++ QE W P+ +G +R++FPWH  LP  E                 ++P  DQ   E                  GG AFGTG+HPTT MC  W++   +    G  +LDYG+GSGILG+ ++ FG +  VGVE+D  AI +A  NA  N L+M+ Y P+E+  +  G+ + L KL      D S+     D                   KFD+TVANILA P+ +L PI A FT+ GG L LSG+++ QAD +L  Y   FD ++V E  GGWV +SG+R
Sbjct:   81 GLKALVIECRDDSGNDLDPSLLSDFLMEIGACSVSIEDSNRGTAAETPVYREPPTGGVVFDGADTLAGTPTGALQATAAAAAAPRPLWAA-SRVVAHLPAAWNSEEVVMLVGATFELAVLPAFRVEDIQDRDWVSAVQENWQPMILGSVRVKFPWHSDLPAEEGVTDILLQGSFQSVEEVVKPIADQSRRERAAARMAATRKTYSKGAAGGAAFGTGDHPTTRMCARWVQEQAQRARPGTTLLDYGAGSGILGMIAMKFGIQRVVGVEIDRDAIRTAIENAKLNKLEMEFYLPEEIEANSNGLSVRLNKLKEKYNHDVSVENIQSDE------------------KFDITVANILAGPLKKLAPIIAKFTKEGGVLGLSGIIDHQADIMLEVYSTYFDDMKVVEEEGGWVCVSGVR 477          
BLAST of mRNA_S-firma_F_contig1043.615.1 vs. uniprot
Match: L1JJW5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JJW5_GUITC)

HSP 1 Score: 185 bits (469), Expect = 1.040e-47
Identity = 132/370 (35.68%), Postives = 187/370 (50.54%), Query Frame = 2
Query:  308 IRCRGANGDDLDPWFLSELLMDIGAMSVSVDDSALGTQEESPLLHEHIQSKAFDPRVPLPSTSGRKDMWGGTSRVVALFPVKWDLTGVVASVEEVXXXXXXXXXXXXXXXXXXXATSSQEGWDPIEVGRLRIRFPWHP-------ALPPSELRPDQVELELEGGRAFGTGEHPTTSMCCTWLEGNV---EGQRV--LDYGSGSGILGLASLSFGAKEAVGVELDLSAIASAATNAARNGLK-MDTYHPQEVGSGKGIDLVLTKLAVSEEMDRSLPKDAMDAMEPLSVADGIAISPEELGKFDVTVANILAAPIMRLQPIFAYFTRPGGKLALSGVLEEQADAVLAAYGDKFDLEVTETMGGWVRISGLRR 1378
            +R    NG  +D   LSELLM+ GA+SV V+D+  GT++E P+ +E                 GR + +     V A +P  WD+  V+  V +                        Q+ W PI +  L +RFPWH         L  SE+     EL LEGG AFGTGEHPTT +CC WL+  +    GQRV  +DYG+GSG+LGL SL FGA+ AV       +I +A +NA  NG++    Y P    + K  +L+       E++  +     +  M  LS  D +   P++   +DV V+NILA P++RL P  A  +R  G L LSG+L EQA+ V+ AY + F  ++ E  G WV I+G R+
Sbjct:   96 VRQDDENGRTIDADELSELLMETGALSVIVEDADRGTEQELPIFNE----------------PGRAERYWNNCNVTAFYPHGWDIPAVLEMVVKSMDLPVVPRYAVDEVRDQDWVKLVQQSWKPILIDHLLLRFPWHSKEDIDSVVLQDSEIH----ELMLEGGMAFGTGEHPTTRLCCRWLQQKLALEHGQRVRVMDYGAGSGVLGLTSLRFGAEAAV------DSIVAAHSNARLNGMESFKVYLPSS--TAKDAELI-------EDLRYAAQLRQLSGM--LSWNDMLETLPDDCHGYDVVVSNILAGPLIRLAPELARLSRAQGLLGLSGILHEQAERVIEAY-EPFYEQLREDQG-WVLITGKRK 426          
BLAST of mRNA_S-firma_F_contig1043.615.1 vs. uniprot
Match: A0A6T6NQS7_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6NQS7_9RHOD)

HSP 1 Score: 181 bits (460), Expect = 1.450e-47
Identity = 117/363 (32.23%), Postives = 177/363 (48.76%), Query Frame = 2
Query:  296 QSLEIRCRGANGDDLDPWFLSELLMDIGAMSVSVDDSALGTQEESPLLHEHIQSKAFDPRVPLPSTSGRKDMWGGTSRVVALFPVKWDLTGVVASVEEVXXXXXXXXXXXXXXXXXXXATSSQEGWDPIEVGRLRIRFPWHPALPPSELRP-DQVELELEGGRAFGTGEHPTTSMCCTWLEGNVEG-QRVLDYGSGSGILGLASLSFGAKEAVGVELDLSAIASAATNAARNGLKMDTYHPQEVGSGKGIDLVLTKLAVSEEMDRSLPKDAMDAMEPLSVADGIAISPEELGKFDVTVANILAAPIMRLQPIFAYFTRPGGKLALSGVLEEQADAVLAAYGDKFDLEVTETMGGWVRISGLRR 1378
            Q +++   G   D +D   LS+LLM++GA+SVSV+D+  GT  E PL HE +     +  +P  +  G K  W   + V ALF     +  V+ +V                          Q+ + PI++GR+ I FPWH     + +R    V +++  G AFGTGEH TT +   WL+  +EG ++VLDYG+GSG+L +A L  GA  A  VE+D  A++++ +NA RN                          + +  +  LP++                 PE    FD+TVANILA P+ +L P+ A  TR GGK+ALSG+L  QA  +   Y   FD++      GW  ++G++R
Sbjct:    4 QWVKVDISGEEYDGVDVELLSDLLMELGAVSVSVEDALRGTDAEKPLFHEPLPGNGVEWIMPADAVGG-KTYWPKCT-VKALFTEDAAVESVIMTVGAELNLPRTPQYEAESVRNEDWVVKVQQSFKPIQIGRILITFPWHSDAETASMREASPVIIQMSPGMAFGTGEHWTTQLVLQWLQDAIEGDEKVLDYGAGSGVLAIAGLKLGAARARLVEIDQEALSTSQSNAERN-------------------------TIEDRCEFFLPEN----------------EPEPSAAFDITVANILAEPLRKLAPLLAAHTRCGGKVALSGILAMQASGLCDVYSQWFDMKQAAVDSGWALLTGVKR 323          
BLAST of mRNA_S-firma_F_contig1043.615.1 vs. uniprot
Match: A0A2I6S8S3_9RHOO (Ribosomal protein L11 methyltransferase n=1 Tax=Aromatoleum pumilum TaxID=2067960 RepID=A0A2I6S8S3_9RHOO)

HSP 1 Score: 171 bits (433), Expect = 3.650e-44
Identity = 125/345 (36.23%), Postives = 163/345 (47.25%), Query Frame = 2
Query:  353 LSELLMDIGAMSVSVDDSALGTQEESPLLHEHIQSKAFDPRVPLPSTSGRKDMWGGTSRVVALFPVKWDLTGVVASVEEVXXXXXXXXXXXXXXXXXXXATSSQEGWDPIEV-GRLRIRFPWHPALPPSELRPDQ--VELELEGGRAFGTGEHPTTSMCCTWLEGNVE-GQRVLDYGSGSGILGLASLSFGAKEAVGVELDLSAIASAATNAARNGLKMDTYHPQEVGSGKGIDLVLTKLAVSEEMDRSLPKDAMDAMEPLSVADGIAISPEELGKFDVTVANILAAPIMRLQPIFAYFTRPGGKLALSGVLEEQADAVLAAYGDKFDLEVTETMGGWVRISGLR 1375
            LSE LMD GA+SVS++D+  GT  E+P   E   + A               +W   SRV+ALF     L   +A                           +Q  ++PI +  RL I   WH A       PD   + +EL+ G AFGTG HPTT +C  WL   V  G RVLDYG GSGILG+A+L  GA++ +GV++D  A+A+A  NAARNG+ M   H     SG+ ++                                         +FD+ VANIL  P+  L P+ A    PGG++ALSGVL EQADAV+AAY     LEV  T  GW R+ G R
Sbjct:   17 LSEALMDAGALSVSIEDADAGTAAETPQFGEPGLAPA--------------GLWDH-SRVIALFDADAALERALAEAAAAAGFDTVPPFTCEPVAEQNWVQLTQRQFEPIRIDARLWIVPSWHEA-------PDAGAINIELDPGMAFGTGSHPTTRLCLQWLCDTVTPGARVLDYGCGSGILGIAALMLGARDVLGVDIDDKALAAAQDNAARNGVTMRVQH-----SGETLE----------------------------------------ERFDIVVANILTNPLCVLAPLLAARVAPGGRIALSGVLGEQADAVIAAYAPWITLEVGATHEGWARLEGRR 294          
BLAST of mRNA_S-firma_F_contig1043.615.1 vs. uniprot
Match: W7TM81_9STRA (Ribosomal protein l11 methyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM81_9STRA)

HSP 1 Score: 176 bits (445), Expect = 6.470e-44
Identity = 138/399 (34.59%), Postives = 202/399 (50.63%), Query Frame = 2
Query:  272 WWEEGGGVQSLEI-----RCRGANGDDLDPWFLSELLMDIGAMSVSVDDSALGTQEESPLLHEHIQSKAFDPRVPLPSTSGRKDMWGGTSRVVALFPVKWDLTGVVASVEEVXXXXXXXXXXXXXXXXXXXATSS--QEGWDPIEVG-RLRIRFPWHP-----ALPPSELRPDQVE-LELEGGRAFGTGEHPTTSMCCTWLEGNV------------EGQRVLDYGSGSGILGLASLSFGAKEAVGVELDLSAIASAATNAARNGLKMDTYHPQEV---GSGKGIDLVLTKLAVSEEMDRSLPKDAMDAMEPLSVADGIAISPEELGKFDVTVANILAAPIMRLQPIFAYFTR-PGGKLALSGVLEEQADAVLAAYGDKF-DLEVTETMGGWVRISGLR 1375
            W E   G +S ++      C   +   +DPW LSELL++ GA S  ++D+A  T++E+P+  EH +          P+ S +  +W   S V+A + +  D+  V++ ++E                          QE W P+ +G RL ++F WH      AL  S    + V+ L LEGG AFG+GEHPTT MCC WL+ ++            EG  V DYG+GSGIL +A+L FGA  A GVE+D+ AI SA  NA  NGL+M    P E    G+  GI  V  +L    + D S+ ++  +          + I+P      DV +ANIL  P++ L    +  T+  GGK+AL+G+LEEQA+ V+AAY   F D+   +  G WV + G R
Sbjct:  109 WTEPWTGAESNDLVRIIFDCYEKDRMLIDPWLLSELLLETGAYSSQIEDAAKDTRDETPIFGEHGE----------PACSEK--IWN-RSLVMADYGLDVDVGSVLSLIKEAFQLGASYPVRYRLERIVDRDWQKEVQESWKPLLLGDRLLVKFTWHEEEDVKALLASRTAVEDVKVLALEGGAAFGSGEHPTTVMCCAWLQSHLAAESAKAGTDGGEGLSVCDYGAGSGILAMAALLFGAGTAFGVEIDVFAIQSAYRNAEMNGLQMAFVQPVETRTEGTEGGIACVTYQLV---QPDGSVDEEDEE----------VQIAPT-----DVMLANILKRPLIELSKQISSLTKLEGGKVALAGLLEEQAEDVMAAYRPYFPDIAPADQEGEWVLLVGTR 476          
BLAST of mRNA_S-firma_F_contig1043.615.1 vs. uniprot
Match: A0A4R6E0I3_9RHOO (Ribosomal protein L11 methyltransferase n=2 Tax=Azoarcus TaxID=12960 RepID=A0A4R6E0I3_9RHOO)

HSP 1 Score: 167 bits (422), Expect = 1.090e-42
Identity = 118/345 (34.20%), Postives = 165/345 (47.83%), Query Frame = 2
Query:  353 LSELLMDIGAMSVSVDDSALGTQEESPLLHE--HIQSKAFDPRVPLPSTSGRKDMWGGTSRVVALFPVKWDLTGVVASVEEVXXXXXXXXXXXXXXXXXXXATSSQEGWDPIEV-GRLRIRFPWHPALPPSELRPDQVELELEGGRAFGTGEHPTTSMCCTWLEGNVE-GQRVLDYGSGSGILGLASLSFGAKEAVGVELDLSAIASAATNAARNGLKMDTYHPQEVGSGKGIDLVLTKLAVSEEMDRSLPKDAMDAMEPLSVADGIAISPEELGKFDVTVANILAAPIMRLQPIFAYFTRPGGKLALSGVLEEQADAVLAAYGDKFDLEVTETMGGWVRISGLR 1375
            LS+ LM+ GA+SVS++D+  GT+ E P   E  H+ +  +D                  SRV+AL     DL  ++A+                          +Q  ++PI +  R+ I   WH A  P     D + +EL+ G AFGTG HPTT +C  WL   V+ GQ VLDYG GSGILG+A+   GA E +GV++D  AI +AA NA+RN +++   H +E                                 PL  A            FD+ VANIL  P+  L P  A    PGG++ALSGVLE QA+ V+AA+    +L+V  ++ GWVR+ G R
Sbjct:   17 LSDALMEAGALSVSIEDADAGTEAEKPQFGEPGHLPTALWD-----------------HSRVIALLDADADLPALLAAASAAAGLASVPSYTTETVAEQNWVQLTQSQFEPIRITDRMWIVPSWHEA--PDG---DAINIELDPGMAFGTGSHPTTRLCLEWLCDAVQPGQTVLDYGCGSGILGIAAARLGAAEVLGVDIDDKAIEAAADNASRNQVRLRLQHSRE---------------------------------PLDTA------------FDIVVANILTNPLCVLAPAIAAHVAPGGRVALSGVLEPQAEQVIAAWAPYIELKVGASLDGWVRLEGQR 294          
BLAST of mRNA_S-firma_F_contig1043.615.1 vs. uniprot
Match: A0A4S4APV2_9RHOO (Ribosomal protein L11 methyltransferase n=1 Tax=Azoarcus rhizosphaerae TaxID=2565932 RepID=A0A4S4APV2_9RHOO)

HSP 1 Score: 167 bits (422), Expect = 1.280e-42
Identity = 119/343 (34.69%), Postives = 163/343 (47.52%), Query Frame = 2
Query:  353 LSELLMDIGAMSVSVDDSALGTQEESPLLHE--HIQSKAFDPRVPLPSTSGRKDMWGGTSRVVALFPVKWDLTGVVASVEEVXXXXXXXXXXXXXXXXXXXATSSQEGWDPIEV-GRLRIRFPWHPALPPSELRPDQVELELEGGRAFGTGEHPTTSMCCTWLEGNVE-GQRVLDYGSGSGILGLASLSFGAKEAVGVELDLSAIASAATNAARNGLKMDTYHPQEVGSGKGIDLVLTKLAVSEEMDRSLPKDAMDAMEPLSVADGIAISPEELGKFDVTVANILAAPIMRLQPIFAYFTRPGGKLALSGVLEEQADAVLAAYGDKFDLEVTETMGGWVRISG 1369
            LS+ LM+ GA+SV ++D+  GT+ E+P   E  H  ++ ++                  SRVVALF  + DLT  +A                           +Q  ++PI +  RL I   WH     S   P+ + +EL+ G AFGTG HPTT +C  WL   V+ G  VLDYG GSGILG+A+   GA + +GV++D  A+ +A  NAARNG+ +   H +                         P DA                     +FDV VANIL  P+  L P+ A    PGG++ALSGVLE QA+ V+AAY     LEV +T  GWVR+ G
Sbjct:   17 LSDALMEAGALSVGIEDADAGTEAETPQFGEPGHHPTRLWE-----------------HSRVVALFDAEADLTVALAQAAGSAGFDAVPPFTVDQVAEQNWVQLTQSQFEPIRITDRLWIVPSWH-----SAPDPEAINIELDPGMAFGTGSHPTTRLCLQWLCETVQPGASVLDYGCGSGILGIAAAKLGAADVLGVDIDDKALVAARDNAARNGVTLRLQHSRA------------------------PLDA---------------------RFDVVVANILTNPLCVLAPLLAGRVAPGGRMALSGVLETQAEQVIAAYAPFIRLEVGDTHEGWVRLEG 292          
BLAST of mRNA_S-firma_F_contig1043.615.1 vs. uniprot
Match: UPI001BB8F8E2 (50S ribosomal protein L11 methyltransferase n=1 Tax=Sulfuritalea sp. TaxID=2480090 RepID=UPI001BB8F8E2)

HSP 1 Score: 166 bits (421), Expect = 1.500e-42
Identity = 122/342 (35.67%), Postives = 163/342 (47.66%), Query Frame = 2
Query:  356 SELLMDIGAMSVSVDDSALGTQEESPLLHEHIQSKAFDPRVPLPSTSGRKDMWGGTSRVVALFPVKWDLTGVVASVEEVXXXXXXXXXXXXXXXXXXXATSSQEGWDPIEV-GRLRIRFPWHPALPPSELRPDQVELELEGGRAFGTGEHPTTSMCCTWLEGNVE-GQRVLDYGSGSGILGLASLSFGAKEAVGVELDLSAIASAATNAARNGLKMDTYHPQEVGSGKGIDLVLTKLAVSEEMDRSLPKDAMDAMEPLSVADGIAISPEELGKFDVTVANILAAPIMRLQPIFAYFTRPGGKLALSGVLEEQADAVLAAYGDKFDLEVTETMGGWVRISGLR 1375
            ++ LM  GA+SVS++D+  GT  E+P   E        P  PL         W   SRVV LF    DL   + +                          +Q  +DPI + GRL I   WH A  P       V L L+ G AFGTG HPTT +C  WLE NV  G+ VLDYG GSGILG+A+L  GA++A+GV++D +A+A+AA NAARNG+ +     +  GSG  ++                                          FD  VANIL  P++ L P+     + GG+LALSGVLE QA+ V+AAY     L V  T  GW+R+ G++
Sbjct:   18 ADALMAAGAISVSIEDALAGTALETPQFGE-----PGSPNAPL---------WA-KSRVVGLFEPVVDLRARICAALGAARLAVPAEIACAEVAEQDWVRLTQSQFDPIRISGRLWIVPSWHVAPDPRA-----VNLVLDPGLAFGTGSHPTTRLCLEWLEANVAPGRCVLDYGCGSGILGIAALRLGAQDALGVDIDPAALAAAAANAARNGVAL-----RLAGSGDRVE----------------------------------------ESFDCVVANILTHPLVLLAPLLCARLKAGGRLALSGVLEAQAEQVIAAYAPHIGLRVGATHEGWIRLEGMQ 294          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1043.615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJD6_ECTSI2.900e-19969.07Ribosomal protein L11 methyltransferase n=2 Tax=Ec... [more]
A0A835Z7L3_9STRA2.450e-7841.82Ribosomal protein L11 methyltransferase n=1 Tax=Tr... [more]
A0A6V1NRU4_HETAK1.700e-6135.58Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
L1JJW5_GUITC1.040e-4735.68Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A6T6NQS7_9RHOD1.450e-4732.23Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A2I6S8S3_9RHOO3.650e-4436.23Ribosomal protein L11 methyltransferase n=1 Tax=Ar... [more]
W7TM81_9STRA6.470e-4434.59Ribosomal protein l11 methyltransferase n=2 Tax=Mo... [more]
A0A4R6E0I3_9RHOO1.090e-4234.20Ribosomal protein L11 methyltransferase n=2 Tax=Az... [more]
A0A4S4APV2_9RHOO1.280e-4234.69Ribosomal protein L11 methyltransferase n=1 Tax=Az... [more]
UPI001BB8F8E21.500e-4235.6750S ribosomal protein L11 methyltransferase n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1043contigS-firma_F_contig1043:11928..18485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LJD6
PFAMsPrmA
Max annot lvl2759|Eukaryota
KEGG koko:K03301
KEGG TC2.A.12
Evalue9.46e-206
EggNOG OGsCOG2264@1|root,2QQTZ@2759|Eukaryota
DescriptionRibosomal protein L11 methyltransferase (PrmA)
COG categoryJ
BRITEko00000
Ec32 ortholog descriptionribosomal protein L11 methyltransferase
Ec32 orthologEc-17_001920.1
Exons10
Model size2370
Cds size1317
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1043.615.1prot_S-firma_F_contig1043.615.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1043 12908..18412 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.2449229-UTR-S-firma_F_contig1043:11927..129071622815577.2449229-UTR-S-firma_F_contig1043:11927..12907Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1043 11928..12907 -
1696949429.5258815-UTR-S-firma_F_contig1043:11927..129071696949429.5258815-UTR-S-firma_F_contig1043:11927..12907Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1043 11928..12907 -
1622815577.3646219-UTR-S-firma_F_contig1043:18412..184851622815577.3646219-UTR-S-firma_F_contig1043:18412..18485Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1043 18413..18485 -
1696949429.6618059-UTR-S-firma_F_contig1043:18412..184851696949429.6618059-UTR-S-firma_F_contig1043:18412..18485Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1043 18413..18485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.2595499-CDS-S-firma_F_contig1043:12907..130501622815577.2595499-CDS-S-firma_F_contig1043:12907..13050Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 12908..13050 -
1696949429.5503926-CDS-S-firma_F_contig1043:12907..130501696949429.5503926-CDS-S-firma_F_contig1043:12907..13050Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 12908..13050 -
1622815577.268586-CDS-S-firma_F_contig1043:13570..137201622815577.268586-CDS-S-firma_F_contig1043:13570..13720Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 13571..13720 -
1696949429.561932-CDS-S-firma_F_contig1043:13570..137201696949429.561932-CDS-S-firma_F_contig1043:13570..13720Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 13571..13720 -
1622815577.2779882-CDS-S-firma_F_contig1043:13977..140561622815577.2779882-CDS-S-firma_F_contig1043:13977..14056Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 13978..14056 -
1696949429.5747395-CDS-S-firma_F_contig1043:13977..140561696949429.5747395-CDS-S-firma_F_contig1043:13977..14056Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 13978..14056 -
1622815577.2877078-CDS-S-firma_F_contig1043:14255..143511622815577.2877078-CDS-S-firma_F_contig1043:14255..14351Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 14256..14351 -
1696949429.5911274-CDS-S-firma_F_contig1043:14255..143511696949429.5911274-CDS-S-firma_F_contig1043:14255..14351Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 14256..14351 -
1622815577.297045-CDS-S-firma_F_contig1043:14721..148271622815577.297045-CDS-S-firma_F_contig1043:14721..14827Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 14722..14827 -
1696949429.60148-CDS-S-firma_F_contig1043:14721..148271696949429.60148-CDS-S-firma_F_contig1043:14721..14827Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 14722..14827 -
1622815577.3094034-CDS-S-firma_F_contig1043:15060..151221622815577.3094034-CDS-S-firma_F_contig1043:15060..15122Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 15061..15122 -
1696949429.6098418-CDS-S-firma_F_contig1043:15060..151221696949429.6098418-CDS-S-firma_F_contig1043:15060..15122Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 15061..15122 -
1622815577.3200517-CDS-S-firma_F_contig1043:15503..156651622815577.3200517-CDS-S-firma_F_contig1043:15503..15665Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 15504..15665 -
1696949429.6187813-CDS-S-firma_F_contig1043:15503..156651696949429.6187813-CDS-S-firma_F_contig1043:15503..15665Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 15504..15665 -
1622815577.329013-CDS-S-firma_F_contig1043:16649..167811622815577.329013-CDS-S-firma_F_contig1043:16649..16781Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 16650..16781 -
1696949429.6279616-CDS-S-firma_F_contig1043:16649..167811696949429.6279616-CDS-S-firma_F_contig1043:16649..16781Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 16650..16781 -
1622815577.3424416-CDS-S-firma_F_contig1043:17517..176591622815577.3424416-CDS-S-firma_F_contig1043:17517..17659Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 17518..17659 -
1696949429.6388113-CDS-S-firma_F_contig1043:17517..176591696949429.6388113-CDS-S-firma_F_contig1043:17517..17659Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 17518..17659 -
1622815577.3533216-CDS-S-firma_F_contig1043:18167..184121622815577.3533216-CDS-S-firma_F_contig1043:18167..18412Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 18168..18412 -
1696949429.650518-CDS-S-firma_F_contig1043:18167..184121696949429.650518-CDS-S-firma_F_contig1043:18167..18412Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1043 18168..18412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1043.615.1

>prot_S-firma_F_contig1043.615.1 ID=prot_S-firma_F_contig1043.615.1|Name=mRNA_S-firma_F_contig1043.615.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=439bp
MTALRNLWSGWLGFVPSSSFGTHPHITGRARPRWLRQPQQSRVAPRPAWL
STDVNEAERQEPVDELWWEEGGGVQSLEIRCRGANGDDLDPWFLSELLMD
IGAMSVSVDDSALGTQEESPLLHEHIQSKAFDPRVPLPSTSGRKDMWGGT
SRVVALFPVKWDLTGVVASVEEVXXXXXXXXXXXXXXXXXXXATSSQEGW
DPIEVGRLRIRFPWHPALPPSELRPDQVELELEGGRAFGTGEHPTTSMCC
TWLEGNVEGQRVLDYGSGSGILGLASLSFGAKEAVGVELDLSAIASAATN
AARNGLKMDTYHPQEVGSGKGIDLVLTKLAVSEEMDRSLPKDAMDAMEPL
SVADGIAISPEELGKFDVTVANILAAPIMRLQPIFAYFTRPGGKLALSGV
LEEQADAVLAAYGDKFDLEVTETMGGWVRISGLRRGET*
back to top

mRNA from alignment at S-firma_F_contig1043:11928..18485-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1043.615.1 ID=mRNA_S-firma_F_contig1043.615.1|Name=mRNA_S-firma_F_contig1043.615.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=6558bp|location=Sequence derived from alignment at S-firma_F_contig1043:11928..18485- (Sphaerotrichia firma ET2_F female)
CTTCGCTTGGGATGCACTTGTGCTGCGTGGGAGAGAGAGGGGGGGGGGGC GAGAGAGACGACATAGTTCCGGTATGACAGCTTTGCGGAACCTTTGGTCT GGTTGGTTAGGTTTCGTTCCGTCGTCAAGCTTTGGAACCCATCCTCACAT CACAGGCAGAGCAAGGCCGCGGTGGTTGCGGCAACCACAGCAGTCGCGGG TTGCTCCTCGGCCTGCCTGGCTGTCAACGGATGTCAACGAGGCTGAGCGT CAGGAGCCAGTGGATGAGCTTTGGTGGGAGGAGGGTGGTGGTGTGCAGTC GCTGGAGATCCGCTGCAGGTGTGGCCTTGTGCGTTTGAATGATACTGCTG TTTGCATGCTGCAGCTTGTGTTGGATGCGGATATGCTCTTGACTCCCGAC GTTGAGCGGTCGCGGGTTCCCCTGCCCATCTCAACAATCTCAATAACGTT TTATGTAGTGAGGCCGGCAGTCTGGTTCGCGCATTTGAAGAATATTTTGT GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGGAGCGGCAGGCTACCTACTTACTGTAACAGCAGCCCGTTCACCTGTTG CCACCGCACCGCTCGGTACATTGCTGATGGTACTACTGCTGCTGTAGTCT AGTCTAGACCAGCATCTCACGGATGAAGGCAGGACGAAGAGGTGCTTTTA TACAAAGCCGACTGGACGGGGTTGTATTCTCAAACGCATACCAACGAATG GGCACACAGAGCAGTTTCCCCACGCACACGTTTCTTCGCATGCCTCTGCT GTGTGCACGTGTGCACGTGTCTACAGGGGTGCGAACGGAGATGACCTGGA TCCTTGGTTCCTGAGCGAACTCCTGATGGACATCGGCGCCATGAGCGTGT CTGTGGACGACTCTGCCCTCGGCACCCAGGAAGAGTCTCCATTGCTCCAC GAGCACATTCAGTCGAAGGTTTGTCCCACGCTACCGCAGCAAGTACATTC TGGCGCCTCCGGTTCTTGGTGGATCTCGTGCTGCCGCCACACCCATACCC GACCCACGGCGGTAGTGCTGTCGTACAGGCCTTTTCAATCAGACAATTAA TGTCACTATTTAGCCCCCGAGTCAGGGGGTGCTCGCTTACGGGACGACTC GAAACAGGACGTTAGTCAATCTACGACATAACGGTAACAACCACGTAGAT TGTCCAAAGCTACCAGCATGTGTGTCTTTCGGAAAACTTTGGCGATGCTC ACAGATGAGGTGCAGTACTGTGCACCAACAATCAGATTGAATCTGAAGCC ACTGAGAGTGGCTCCTGGAGGCGATGACCTGCTTGTACTGTACACCGCTG AATCAGATTGATTCTGAAGCCGCTGAGAGTGGATCCTGGAGGCGATGACC TGCTTCTGTACACCGCTGACCTCTTCAACTAAACAGTACCTGGTGCCGTA TGCTTGTACTGGCAACTTTACGCCAGCCCTGCATTGTTTGTACCAGAACA GAATACACATTCCCTCGCCGCAGCATGTTGACGGTGGCTGGAATAGAAGG CTTGCTACCCCATACACGTTTACCTTGCTGAGCTAAATTGAAATACTCTA CGCTGCTGTTTTTGCGTGTTGCTCTGTGTTATATTCCACGGTTGATTCCG GTCAACACCAACATGAACACGAAACGAACACGAACATGAACATGGACCCA ACAGGCATTTGACCCGAGAGTCCCGTTACCCTCAACTTCCGGGCGGAAAG ACATGTGGGGGGGTACCAGCAGGGTGGTGGCGCTCTTTCCGGTCAAGTGG GACCTGACAGGAGTGGTGGCCAGCGTCGAAGAGGTAATGTAGCGTGAAAG AAAGGAATCCTGGGTTGCCGTCGTTTTCTTCCAGGCTTTGCGTAGGGTGT ACCTGCCGCTGCGAAGATGTTTTGTGTGAAGACTCGTCGTTTGCAACACG TTGCTCGAGGTTTTCCGCACTTACNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNGCGACATCGTCACAGGAAGGTTG GGACCCTATCGAGGTCGGGCGATTGCGCATTCGATTTCCCTGGCATCCGG CTCTGCCTCCCTCCGAACTTCGGCCTGACCAGGTTTGTCACTTGTGACTT GTCACTTTGTCTTTTTGGTTGGCTTCGGAGCTGAATAGACAACTTCTTCA ACGGGTATGACATGCTGCAAGAGTATCGTGGGTAGTGTGTTGTAGTGTTC TTGCCTTCGTGCTGGTCGACGCGGTGATGTTCAGATACCTATCCCAGAGT CAACCCAAACCGCACGTGTGGGTGCGGTGATTGATTGTTTAGCGTGCTTC ACACGTGATGTCATGTCGGCACATGTGCGGGCTAGTCGTCTGTTTGTTTG TTACGAACGATCCGAACAGCTTGCGTGTTGACGCCATCGCACCGTCGTGT CGTCATGTATTGTGACTGCGTTGCGTTGGTTTCCTTTGTTTGATTTCTTT GTTGGCACGCCAGGTGGAGCTAGAGCTGGAGGGCGGCAGGGCGTTTGGGA CAGGCGAGCACCCGACAACCTCCATGTACGTATCAAGGGGATGATGGAGA GTGTGTTCTCGTGTACAGATACTGCAGATTTGATGTGAATATCCGGGGTA CAATACCTTGATATGTTTTGCGACCATCGAACGAGCTTTCGGGTGCGAAC ATAAAACCACATTCGGAAATGAGCGTGAGCACTTAAGTTGCGCTAAGATG CCCCAGTCACCCGGTCTTGCGTTCCGCTCAAAGCTCGTTTTCTATTTCAT CCATTCAGGTGCTGCACGTGGCTGGAAGGCAACGTCGAGGGGCAGCGTGT GTTGGACTACGGCAGCGGCAGCGGGATACTGGGTTTGGCGTCGCTTTCCT TTGGCGCCAAAGAGGTAAAAGAGGTGCCCTTGACCGTTCGCTCCGTCTCT CGCCTTGCTGCGTATGTAGGCTCTCCCTCCAAACAGTTCACGGTTGCTCT ACCCGCGTGTGTACCTTCCCATCCGCACTCAGAAGAAGGTTGGTCTCAAA CGGACGTTCTAGGTCGACTGTTTTTCTGCGAGCCTTACAACTCGGTACAA ACCCGTAGCAGACGCGCTCGACGGATTGCCAGAAAACAGAAGAGAAGGGG CCACATGCTGCGATATGCATGCATCGGTGCAAAAATATAGTGATTGTTGC CCCGGCCGGAAATTGCTGTTGTTCTGGGCACCAAAGGACATCAGTTTGCT TGTCTCCGTCTCGTGGCTTGTCTTTTTTTGCCAGGCAGTCGGGGTGGAGC TAGACTTGAGTGCTATCGCAAGCGCTGCCACAAACGCCGCCAGAAACGGC CTAAAAATGGACACCTACCACCCACAAGAGGTACTCTATGGACGTGGCAC CAGCAGAGCTGGGGGAGGGATTTTGCACATCTTGCACTTGTTTGTTGTGA ACTCAATAATGCCAGCCGGTTCAAGCGCGTACGTGGAAAAGCATTGACGT CATGCTGCATGTTTTGCCCGGCGTTGATGCAGTCCTTCCGCTGAACCTCT ACTGTTGCACTGTTTTGATATTGTTGAAGGTGGGCAGCGGTAAAGGCATA GACCTGGTCTTGACCAAGCTGGCTGTGTCTGAGGAAATGGATAGAAGCCT TCCTAAAGGTAATGTAGTATCTCTTTGGTAGTCACGCCATGCATGGCTGT TGTTATCGGGTATCGGGCCTATGTACATCCACCTTGCCTCTTTCTGTCGG GTGTGCTTTGTCTAGGCTACTGTGCATGCGTGCTGCCGTGCACCTGGTAT ATCACCTCGTCGGCCTGCGCATTCTGTTGCATGCACTCTATTATATTGCA GTGTTCTGGCCTAACCCTCTGCGATGTTCACCTTGTCCTCTGGTGCGACC GGTGCGAAAATGCAGACGCGATGGACGCGATGGAGCCACTGTCGGTCGCA GACGGGATTGCTATTTCTCCTGAAGAGTTGGGCAAGTTTGACGTCACGGT TGCCAACATCCTTGCAGCCCCCATCATGAGGCTTCAGCCCATCTTCGCGT ATTTCACGCGCCCAGGTGAGAAGCAATGACAATCAACGGCATAATTGAAA TGGGGGCGGAAACTACCTTCGCCACGATGCATGCTTCCAATCGGCGGAAC AACACAGTACAATATTCAAGTGCGATCTCTAGCGCGGAGGAAGTATTCCC TGCGCACAGCCTTTGCTGCGGAATGCTACCGCGATGACTGGTGGGGACAC CGGCTCTTGCTGTTGTTGAGCCGTTGTGTCGCGAACCCGCGTGGTAGGTA CCAGTGTTTGGTTAGCAGAGAAAAAATAAGAGTGAGGTTGGGCAAAGCGA TCACCTTGCTAAAGCGCGCAGTTGTTGTGGCGTGTGGAAGAAGGTACAAC ACCTACGTACAGTACCAAATCGCTCGTGTGCTCGTTCAGGACCCGTCCAG GAGAGCGAAGGGAAGTACAATTAGGAATAACGTGTCTAACTCGATGGCAT CCGCCACAATATTACCTTTAACTCCCCCCACAACTTGAATCAAACGAGTT ATTTCGTTGCTTTCCACGTTGGTCGCGGTATGCAGGGGGAAAGCTGGCCC TGTCAGGGGTGCTCGAAGAGCAGGCGGATGCTGTTCTCGCCGCGTACGGC GACAAGTTTGACCTCGAAGTCACGGAGACAATGGGGGGCTGGGTACGCAT CTCTGGCCTGAGACGAGGCGAGACGTAGCCGATAGCACATCAAAGCATGA ACGGAGGGGGCGACGCTTTCGCCAGGCGATTCGTGTTGTGCAGCGCCGCC CGGAGCATCGTAAAAACACCCCCCAGTTGTTTCAGTCCTCCTACAACCGC TGGGATTTTGATCAGATAATACGAAGTACAAGTTCTACACCGGCAGCCAG CGCTTCCCGCCTCGGTTTGACACGTATCTCCGATGTAATGGGCACGTGAT ACTGTGTGTATTTTGCCCTTAACTGAGCTGTAGGTTGGCTGAAGAAGTCG AGAAAACATGATGGGTTTCGATCGAGTAGCGCGTGTGTTCTACTGTAGCT GTGGTAGCCGTCTTTTTTTACGAGCCTTGAGATATCCCAATCTCGGTATG ACGGGTTTAGATACATTTAAGAAATAGAGGGCAATGTACTTCGCCATGGT GAAGGAACCCCGCATGGCGTTTTGCCCACCGTGCGTGTTAACCACACGCT CGAGACAGCTACTGTGGTGTACGTGTAGTAGAAGCACGTGCGATTGTTGC ATGTCACACTGCATTGCTTCCTGGGGCTTCTGCACGTAGACGACACATTT GTGATGAAAACGATATACATGTGTCTAGCGTCCCGCGAGCGCACTGTTGA CTTAATTTCGATGACGACCACGGTGTGCTACAGTAGTCCTAGGGCTTTAC GAGGATGCGATTTTAGGGTTTAGGGTCCGTCAGGGATACACGCCGAAATG ATATTTGGCAGTTGGTAGATATTGCTCTCCCGCATGCTGGCTTTCTAGGA AGTCCTCTGTGAGCTACGAAGTACGTATGAGCGCGAAAGGGCTTGAAGCG CGGTGTCCCTGGCGCCTGTAGAGTGCCGCTCCGACTCACTCACGCACGCA CACGCGCCATCCCGCGTGCTAGCGGTGAAATAGTGAGGTAACGAAATCGA ATGACATCATGTAACATGACCCGGTTTTGGGGTTCAGCACAAATCTCCCG TTTTCGAG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1043:11928..18485-

>mRNA_S-firma_F_contig1043.615.1 ID=mRNA_S-firma_F_contig1043.615.1|Name=mRNA_S-firma_F_contig1043.615.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2634bp|location=Sequence derived from alignment at S-firma_F_contig1043:11928..18485- (Sphaerotrichia firma ET2_F female)
ATGACAGCTTTGCGGAACCTTTGGTCTGGTTGGTTAGGTTTCGTTCCGTC
GTCAAGCTTTGGAACCCATCCTCACATCACAGGCAGAGCAAGGCCGCGGT
GGTTGCGGCAACCACAGCAGTCGCGGGTTGCTCCTCGGCCTGCCTGGCTG
TCAACGGATGTCAACGAGGCTGAGCGTCAGGAGCCAGTGGATGAGCTTTG
GTGGGAGGAGGGTGGTGGTGTGCAGTCGCTGGAGATCCGCTGCAGATGAC
AGCTTTGCGGAACCTTTGGTCTGGTTGGTTAGGTTTCGTTCCGTCGTCAA
GCTTTGGAACCCATCCTCACATCACAGGCAGAGCAAGGCCGCGGTGGTTG
CGGCAACCACAGCAGTCGCGGGTTGCTCCTCGGCCTGCCTGGCTGTCAAC
GGATGTCAACGAGGCTGAGCGTCAGGAGCCAGTGGATGAGCTTTGGTGGG
AGGAGGGTGGTGGTGTGCAGTCGCTGGAGATCCGCTGCAGGGGTGCGAAC
GGAGATGACCTGGATCCTTGGTTCCTGAGCGAACTCCTGATGGACATCGG
CGCCATGAGCGTGTCTGTGGACGACTCTGCCCTCGGCACCCAGGAAGAGT
CTCCATTGCTCCACGAGCACATTCAGTCGAAGGGGTGCGAACGGAGATGA
CCTGGATCCTTGGTTCCTGAGCGAACTCCTGATGGACATCGGCGCCATGA
GCGTGTCTGTGGACGACTCTGCCCTCGGCACCCAGGAAGAGTCTCCATTG
CTCCACGAGCACATTCAGTCGAAGGCATTTGACCCGAGAGTCCCGTTACC
CTCAACTTCCGGGCGGAAAGACATGTGGGGGGGTACCAGCAGGGTGGTGG
CGCTCTTTCCGGTCAAGTGGGACCTGACAGGAGTGGTGGCCAGCGTCGAA
GAGGTAGCATTTGACCCGAGAGTCCCGTTACCCTCAACTTCCGGGCGGAA
AGACATGTGGGGGGGTACCAGCAGGGTGGTGGCGCTCTTTCCGGTCAAGT
GGGACCTGACAGGAGTGGTGGCCAGCGTCGAAGAGGTANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGAC
ATCGTCACAGGAAGGTTGGGACCCTATCGAGGTCGGGCGATTGCGCATTC
GATTTCCCTGGCATCCGGCTCTGCCTCCCTCCGAACTTCGGCCTGACCAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGCGACATCGTCACAGGAAGGTTGGGACCCTATCGAGGTCGGGC
GATTGCGCATTCGATTTCCCTGGCATCCGGCTCTGCCTCCCTCCGAACTT
CGGCCTGACCAGGTGGAGCTAGAGCTGGAGGGCGGCAGGGCGTTTGGGAC
AGGCGAGCACCCGACAACCTCCATGTGGAGCTAGAGCTGGAGGGCGGCAG
GGCGTTTGGGACAGGCGAGCACCCGACAACCTCCATGTGCTGCACGTGGC
TGGAAGGCAACGTCGAGGGGCAGCGTGTGTTGGACTACGGCAGCGGCAGC
GGGATACTGGGTTTGGCGTCGCTTTCCTTTGGCGCCAAAGAGGTGCTGCA
CGTGGCTGGAAGGCAACGTCGAGGGGCAGCGTGTGTTGGACTACGGCAGC
GGCAGCGGGATACTGGGTTTGGCGTCGCTTTCCTTTGGCGCCAAAGAGGC
AGTCGGGGTGGAGCTAGACTTGAGTGCTATCGCAAGCGCTGCCACAAACG
CCGCCAGAAACGGCCTAAAAATGGACACCTACCACCCACAAGAGGCAGTC
GGGGTGGAGCTAGACTTGAGTGCTATCGCAAGCGCTGCCACAAACGCCGC
CAGAAACGGCCTAAAAATGGACACCTACCACCCACAAGAGGTGGGCAGCG
GTAAAGGCATAGACCTGGTCTTGACCAAGCTGGCTGTGTCTGAGGAAATG
GATAGAAGCCTTCCTAAAGGTGGGCAGCGGTAAAGGCATAGACCTGGTCT
TGACCAAGCTGGCTGTGTCTGAGGAAATGGATAGAAGCCTTCCTAAAGAC
GCGATGGACGCGATGGAGCCACTGTCGGTCGCAGACGGGATTGCTATTTC
TCCTGAAGAGTTGGGCAAGTTTGACGTCACGGTTGCCAACATCCTTGCAG
CCCCCATCATGAGGCTTCAGCCCATCTTCGCGTATTTCACGCGCCCAGAC
GCGATGGACGCGATGGAGCCACTGTCGGTCGCAGACGGGATTGCTATTTC
TCCTGAAGAGTTGGGCAAGTTTGACGTCACGGTTGCCAACATCCTTGCAG
CCCCCATCATGAGGCTTCAGCCCATCTTCGCGTATTTCACGCGCCCAGGG
GGAAAGCTGGCCCTGTCAGGGGTGCTCGAAGAGCAGGCGGATGCTGTTCT
CGCCGCGTACGGCGACAAGTTTGACCTCGAAGTCACGGAGACAATGGGGG
GCTGGGTACGCATCTCTGGCCTGAGACGAGGCGAGACGTAGGGGGAAAGC
TGGCCCTGTCAGGGGTGCTCGAAGAGCAGGCGGATGCTGTTCTCGCCGCG
TACGGCGACAAGTTTGACCTCGAAGTCACGGAGACAATGGGGGGCTGGGT
ACGCATCTCTGGCCTGAGACGAGGCGAGACGTAG
back to top