mRNA_S-firma_F_contig10404.588.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10404.588.1
Unique NamemRNA_S-firma_F_contig10404.588.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10404.588.1 vs. uniprot
Match: A0A067CH85_SAPPC (Fe_hyd_SSU domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CH85_SAPPC)

HSP 1 Score: 224 bits (570), Expect = 3.450e-66
Identity = 130/292 (44.52%), Postives = 174/292 (59.59%), Query Frame = 1
Query:    1 QITGTQVKDLFAPAGVTRDKIHHTTIMPCFDKKLEASRVDFTDTLLSARDVDCVLTSAELVDVFTEQAIDFAALPETDIVPSADLAGAGAPSVDLERFLCSVSDDGTQLVGPVAASAGSGGFLDYVFRAAAAALHGVVLEGSLEFKAGRNPDFSEVTLEVDGAVVLQFAKAYGFRNISSVVTKMKRGRSPYHFIEIMACPSGCTNGGGQVKLAAHEDGTLVTPSESRALVSKVDGLLHDRA-HLPAPDSEASKVTYSRVGGGPGSEAARRVLHTQFRAVPKLP-AEALAMKW 870
            QITGT VK LF+      D+++H T+MPC+DKKLEASR DF D     RDVDCVL ++E++D+  E  +D AALP+  + P              ER    V+D  T LVG      G+GG+L+++FR AA  L+ V +EG L +  GRN DF EV+L VDG  VL+FA AYGFRNI +V+ K+KR + PY F+EIMACP GC NGGGQVK  + E         ++ALV KV     DR    P+ +   +++  + +   P  + AR V HT++ AVPKL  A    +KW
Sbjct:  238 QITGTLVKRLFSQP---TDRVYHATVMPCYDKKLEASRNDFLDAATETRDVDCVLAASEVLDMLVEANVDLAALPDAVLTPD-------------ERLWSGVAD--THLVGATEGEIGAGGYLEHIFRFAAKELYNVDVEGPLPYVQGRNADFREVSLVVDGKEVLKFALAYGFRNIQTVLMKIKRNKCPYQFVEIMACPGGCLNGGGQVKPESAE--------ANKALVEKVYATFRDRTLRAPSANPACAQLYATYLDDTPFGQKARSVFHTRYHAVPKLELANPFGIKW 503          
BLAST of mRNA_S-firma_F_contig10404.588.1 vs. uniprot
Match: A0A5D6XLY1_9STRA (Fe_hyd_SSU domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLY1_9STRA)

HSP 1 Score: 221 bits (563), Expect = 8.090e-65
Identity = 131/293 (44.71%), Postives = 175/293 (59.73%), Query Frame = 1
Query:    1 QITGTQVKDLFA-PAGVTRDKIHHTTIMPCFDKKLEASRVDFTDTLLSARDVDCVLTSAELVDVFTEQAIDFAALPETDIVPSADLAGAGAPSVDLERFLCSVSDDGTQLVGPVAASAGSGGFLDYVFRAAAAALHGVVLEGSLEFKAGRNPDFSEVTLEVDGAVVLQFAKAYGFRNISSVVTKMKRGRSPYHFIEIMACPSGCTNGGGQVKLAAHEDGTLVTPSESRALVSKVDGLLHDRAHLPAPDSEASKVTYSRV-GGGPGSEAARRVLHTQFRAVPKLP-AEALAMKW 870
            QI G  +K + +   G+    ++H  +MPCFDKKLEASR DF D     RDVDCVL + E+V++   Q+IDFAAL    + P              E  L  VS+DG  ++G    +A SGG L+++FR AA  L GV + G LE+  GRNPDF EVTL V+G  VL+FA AYGFRNI SV+TK++R + PYH++E+MACPSGC NGGGQ+K  +    TL+     R + S+ + L   R   P  D+   +  Y +  GG P SE AR   HT++ AVPKL  +  L +KW
Sbjct:  267 QIAGALIKHMVSREQGLAATDVYHVAVMPCFDKKLEASRKDFLDAETQVRDVDCVLATTEIVELIAAQSIDFAALELAQLSPQ-------------EILLSGVSEDGAAVLGSNV-NASSGGQLEHIFRYAAKELFGVDVRGPLEYVVGRNPDFREVTLVVNGQEVLKFAIAYGFRNIQSVMTKLRRNKCPYHYVELMACPSGCLNGGGQIKPRS----TLLASELLRDVTSRFEEL---RVRAPT-DNPGCRYVYDKFCGGQPFSEPARATFHTRYHAVPKLELSNPLGIKW 537          
BLAST of mRNA_S-firma_F_contig10404.588.1 vs. uniprot
Match: A0A3R7KXU8_9STRA (Fe_hyd_SSU domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KXU8_9STRA)

HSP 1 Score: 220 bits (561), Expect = 1.200e-64
Identity = 134/294 (45.58%), Postives = 179/294 (60.88%), Query Frame = 1
Query:    1 QITGTQVKDLFA-PAGVTRDKIHHTTIMPCFDKKLEASRVDFTDTLLSARDVDCVLTSAELVDVFTEQAIDFAALPETDIVPSADLAGAGAPSVDLERFLCSVSDDGTQLVGPVAASAGSGGFLDYVFRAAAAALHGVVLEGSLEFKAGRNPDFSEVTLEVDGAVVLQFAKAYGFRNISSVVTKMKRGRSPYHFIEIMACPSGCTNGGGQVKLAAHEDGTLVTPSESRALVSKVDGLLHDRAHLPAPDSE-ASKVTYSR-VGGGPGSEAARRVLHTQFRAVPKLP-AEALAMKW 870
            QI G+ +K   +   GVT   ++H  +MPCFDKKLEASR DF D     +DVDCVL + E++D+     IDFA+L   ++ P              E  L  VS+DG+ ++G    +A SGG L+++FR AA  L  V + G LE+ AGRNPDF EV+L V+G  VL+FA AYGFRNI S++TK++R R PYH++EIMACPSGC NGGGQ+K  +    TL+       + S+   L     H+  P +  A K  Y + +GG P SEAAR VLHTQ+ AVPKL  +  L +KW
Sbjct:  254 QIAGSLIKRFVSGERGVTPIDVYHVAVMPCFDKKLEASRKDFQDPEHETKDVDCVLATTEIIDLIESLGIDFASLELANLSPE-------------EVMLSGVSEDGSSVLGSNL-NATSGGQLEHIFRFAAKELFNVEVNGPLEYMAGRNPDFREVSLVVEGKEVLKFAIAYGFRNIQSIMTKIRRNRCPYHYVEIMACPSGCLNGGGQIKPKS----TLLASELLDNVTSRFQEL-----HVCEPVANLAVKYVYEKYLGGAPFSEAARSVLHTQYHAVPKLEQSNPLGIKW 524          
BLAST of mRNA_S-firma_F_contig10404.588.1 vs. uniprot
Match: A0A662WUJ6_9STRA (Fe_hyd_SSU domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUJ6_9STRA)

HSP 1 Score: 220 bits (561), Expect = 2.070e-64
Identity = 133/293 (45.39%), Postives = 178/293 (60.75%), Query Frame = 1
Query:    1 QITGTQVKDLFAPA-GVTRDKIHHTTIMPCFDKKLEASRVDFTDTLLSARDVDCVLTSAELVDVFTEQAIDFAALPETDIVPSADLAGAGAPSVDLERFLCSVSDDGTQLVGPVAASAGSGGFLDYVFRAAAAALHGVVLEGSLEFKAGRNPDFSEVTLEVDGAVVLQFAKAYGFRNISSVVTKMKRGRSPYHFIEIMACPSGCTNGGGQVKLAAHEDGTLVTPSESRALVSKVDGLLHDRAHLPAPDSEASKVTYSR-VGGGPGSEAARRVLHTQFRAVPKLP-AEALAMKW 870
            QI G+ +K       GVT   ++H  +MPCFDKKLEASR DF D     +DVDCVL + E++D+     IDFA+L   D+                E  L  +S+DG+ ++G  + +A SGG L+++FR AA  L  V ++G LE+ AGRNPDF EV+L V+G  VL+FA AYGFRNI S++TK++R R PYH++EIMACPSGC NGGGQVK  +    TL+    S  L +        R   P  D+ A K  Y + + G P SEAAR+VLHT++ AVPKL  +  L +KW
Sbjct:  279 QIAGSLIKRFVCGEHGVTPSDVYHVAVMPCFDKKLEASRKDFLDPEHQVKDVDCVLATTEIIDLIEALEIDFASLELADLSSE-------------ELMLSGISEDGSSVLGS-SLNASSGGQLEHIFRFAAKELFNVDVDGPLEYVAGRNPDFREVSLVVEGQEVLKFAVAYGFRNIQSIMTKIRRNRCPYHYVEIMACPSGCLNGGGQVKPKS----TLLA---SELLDNATSHFQELRVRAPT-DNPAVKYVYEKHLAGVPFSEAARKVLHTRYHAVPKLELSNPLGIKW 549          
BLAST of mRNA_S-firma_F_contig10404.588.1 vs. uniprot
Match: H3GG46_PHYRM (Fe_hyd_SSU domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=H3GG46_PHYRM)

HSP 1 Score: 219 bits (557), Expect = 4.090e-64
Identity = 132/292 (45.21%), Postives = 178/292 (60.96%), Query Frame = 1
Query:    1 QITGTQVKDLFAPA-GVTRDKIHHTTIMPCFDKKLEASRVDFTDTLLSARDVDCVLTSAELVDVFTEQAIDFAALPETDIVPSADLAGAGAPSVDLERFLCSVSDDGTQLVGPVAASAGSGGFLDYVFRAAAAALHGVVLEGSLEFKAGRNPDFSEVTLEVDGAVVLQFAKAYGFRNISSVVTKMKRGRSPYHFIEIMACPSGCTNGGGQVKLAAHEDGTLVTPSESRALVSKVDGLLHDRAHLPAPDSEASKVTYSRVGGGPGSEAARRVLHTQFRAVPKLP-AEALAMKW 870
            QI G+ +K   +   GV  ++++H  +MPCFDKKLEASR DF D   + +DVDCVL + E++++     IDFA L         +LA   +     E  L  VS+DG  ++G  + SA SGG L+++FR AA  L  V + G LE+ AGRNPDF EV+L V+G  VL+FA AYGFRNI S++TK++R R PYH++EIMACPSGC NGGGQ+K  +    TL+       + S+   L   +   P  +     V    +GG P SEAARRVLHTQ+ AVPKL  +  L +KW
Sbjct:  248 QIAGSIIKRFVSGEHGVAPNEVYHVAVMPCFDKKLEASRKDFQDPEDATKDVDCVLATTEIIELIDSLNIDFATL---------ELASLSSE----EALLSGVSEDGLSVLGS-SLSASSGGQLEHIFRFAAKELFNVEVNGPLEYVAGRNPDFREVSLVVEGKEVLKFAVAYGFRNIQSIMTKIRRNRCPYHYVEIMACPSGCLNGGGQIKPKS----TLLASELLDNVTSRFQEL---QVRDPVANPAVKYVYEKYLGGVPFSEAARRVLHTQYHAVPKLEQSNPLGIKW 518          
BLAST of mRNA_S-firma_F_contig10404.588.1 vs. uniprot
Match: A0A3M6VN20_9STRA (Fe_hyd_SSU domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VN20_9STRA)

HSP 1 Score: 218 bits (554), Expect = 7.230e-64
Identity = 128/293 (43.69%), Postives = 177/293 (60.41%), Query Frame = 1
Query:    1 QITGTQVKD-LFAPAGVTRDKIHHTTIMPCFDKKLEASRVDFTDTLLSARDVDCVLTSAELVDVFTEQAIDFAALPETDIVPSADLAGAGAPSVDLERFLCSVSDDGTQLVGPVAASAGSGGFLDYVFRAAAAALHGVVLEGSLEFKAGRNPDFSEVTLEVDGAVVLQFAKAYGFRNISSVVTKMKRGRSPYHFIEIMACPSGCTNGGGQVKLAAHEDGTLVTPSESRALVSKVDGLLHDRAHLPAPDSEASKVTYSR-VGGGPGSEAARRVLHTQFRAVPKLP-AEALAMKW 870
            QI G+ VK  L    G+  D+++H  +MPCFDKKLEASR DF D   + R+VDCVL + E++++     IDFA +   ++ P              E  L  VS+DG+ ++G  + +A SGG L+++FR AA  L  V + G LE+ AGRNPDF EV+L V+G  VL+FA AYGFRNI S++TK++R R PYH++EIMACPSGC NGGGQ++  +    TL+       L+  V     +        + A K  Y + +GG P SE AR VLHTQ+ AVPK+  +  L +KW
Sbjct:  228 QIAGSIVKRFLSGERGIAPDEVYHVAVMPCFDKKLEASRKDFQDPEHATREVDCVLATTEIIELVESLNIDFAGVKPANLTPE-------------EIMLSGVSEDGSSVLGS-SLNASSGGQLEHIFRFAAKKLFNVEVSGPLEYVAGRNPDFREVSLVVEGKEVLKFAVAYGFRNIQSIMTKIRRNRCPYHYVEIMACPSGCLNGGGQIRPKS----TLLATE----LLDNVTSRFQELQVREPTANPAVKYLYEKYLGGTPFSETAREVLHTQYHAVPKMEQSNPLGIKW 498          
BLAST of mRNA_S-firma_F_contig10404.588.1 vs. uniprot
Match: A0A8K1CNM2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNM2_PYTOL)

HSP 1 Score: 213 bits (543), Expect = 5.110e-62
Identity = 129/293 (44.03%), Postives = 175/293 (59.73%), Query Frame = 1
Query:    1 QITGTQVKDLFA-PAGVTRDKIHHTTIMPCFDKKLEASRVDFTDTLLSARDVDCVLTSAELVDVFTEQAIDFAALPETDIVPSADLAGAGAPSVDLERFLCSVSDDGTQLVGPVAASAGSGGFLDYVFRAAAAALHGVVLEGSLEFKAGRNPDFSEVTLEVDGAVVLQFAKAYGFRNISSVVTKMKRGRSPYHFIEIMACPSGCTNGGGQVKLAAHEDGTLVTPSESRALVSKVDGLLHDRAHLPAPDSEASKVTYSR-VGGGPGSEAARRVLHTQFRAVPKLP-AEALAMKW 870
            QI G  VK L     G   ++++H T+MPCFDKKLEASR DF D    A+DVDCVL + E++D+     + F     TD+    +LA   A  +     L  VS D + ++G    +A SGG L+++FR AA  L  V ++G LE+  GRNPDF EV+L VDG  VL+FA AYGFRNI S++TK++R + PYH++EIMACPSGC NGGGQ+K  +    TLV       L++ V     +       D+ A +  Y + +   P SE+ARR LHTQ+ AVPK+  A  L +KW
Sbjct:  251 QIAGALVKHLVGREKGFNANEVYHVTVMPCFDKKLEASRKDFLDEATEAKDVDCVLATTEVIDLMNSLGVSF-----TDL----ELAELTADEI----LLSGVSSDASTILGSNV-NASSGGHLEHIFRFAAKELFNVEVQGPLEYVVGRNPDFREVSLVVDGQDVLKFAIAYGFRNIQSIMTKIRRNKCPYHYVEIMACPSGCLNGGGQIKPKS----TLVASE----LLANVTSRFQELQVRQPTDNPACRYVYEKYLENQPFSESARRALHTQYHAVPKMEQANPLGIKW 521          
BLAST of mRNA_S-firma_F_contig10404.588.1 vs. uniprot
Match: M4BN82_HYAAE (Fe_hyd_SSU domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BN82_HYAAE)

HSP 1 Score: 212 bits (540), Expect = 2.500e-61
Identity = 125/293 (42.66%), Postives = 176/293 (60.07%), Query Frame = 1
Query:    1 QITGTQVKDLFAPA-GVTRDKIHHTTIMPCFDKKLEASRVDFTDTLLSARDVDCVLTSAELVDVFTEQAIDFAALPETDIVPSADLAGAGAPSVDLERFLCSVSDDGTQLVGPVAASAGSGGFLDYVFRAAAAALHGVVLEGSLEFKAGRNPDFSEVTLEVDGAVVLQFAKAYGFRNISSVVTKMKRGRSPYHFIEIMACPSGCTNGGGQVKLAAHEDGTLVTPSESRALVSKVDGLLHDRAHLPAPDSEASKVTYSR-VGGGPGSEAARRVLHTQFRAVPKLP-AEALAMKW 870
            QI G+ +K   +   G    +++H  +MPCFDKKLEASR DF D   + ++VDCVL + E++++  +  +DF AL    + P              E  L  VSDDG+ ++G  + +A SGG L+++FR A+  L GV + G LE+ AGRNPDF EV+L V+G  VL+FA +YGFRNI S++TK++R + PYH++EIMACPSGC NGGGQ+K  +    TL    ++  L+  V     +        S A K  Y   +GG P SE AR VLHTQ+ AVPK+  +  L +KW
Sbjct:  278 QIAGSIIKRFVSGEHGAAPHEVYHVAVMPCFDKKLEASRKDFQDAENATKEVDCVLATTEIIELIEKLDVDFVALELAKLTPE-------------EIMLSGVSDDGSSVLGS-SLNASSGGQLEHIFRFASKELFGVDVNGPLEYVAGRNPDFREVSLAVEGKEVLKFAISYGFRNIQSIMTKIRRNKCPYHYVEIMACPSGCLNGGGQIKPKS----TL----QATGLLDNVTSRFQELQVRQPNASPAVKHVYETYLGGMPFSEVAREVLHTQYHAVPKMEQSNPLGIKW 548          
BLAST of mRNA_S-firma_F_contig10404.588.1 vs. uniprot
Match: A0A2D4BNQ6_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNQ6_PYTIN)

HSP 1 Score: 217 bits (552), Expect = 1.530e-60
Identity = 130/293 (44.37%), Postives = 177/293 (60.41%), Query Frame = 1
Query:    1 QITGTQVKDLFAPA-GVTRDKIHHTTIMPCFDKKLEASRVDFTDTLLSARDVDCVLTSAELVDVFTEQAIDFAALPETDIVPSADLAGAGAPSVDLERFLCSVSDDGTQLVGPVAASAGSGGFLDYVFRAAAAALHGVVLEGSLEFKAGRNPDFSEVTLEVDGAVVLQFAKAYGFRNISSVVTKMKRGRSPYHFIEIMACPSGCTNGGGQVKLAAHEDGTLVTPSESRALVSKVDGLLHDRAHLPAPDSEASKVTYSR-VGGGPGSEAARRVLHTQFRAVPKLP-AEALAMKW 870
            QI G  VK + A   G+  ++++H  +MPCFDKKLEASR DF D    ++DVDCVL + E++D+     +D  AL         +LA   A     E  L  +S DGT ++G  + +AGSGG L+++FR AA  L GV +EG LE+ AGRN DF EVTL V+G  VL+FA AYGFRNI S++TK++R +  YH++EIMACPSGC NGGGQ+K  +          E+ AL+  V     +       D+ A +  Y + + G P S +ARR LHTQ+ AVPKL  +  L +KW
Sbjct:  249 QIAGALVKHVVAREHGIAPNEVYHVAVMPCFDKKLEASRKDFLDEETESKDVDCVLATTEIIDLMQTLNVDLNAL---------ELAQLTAD----ELMLSGISPDGTSVLG-TSLNAGSGGQLEHIFRYAAKELFGVTVEGPLEYVAGRNSDFREVTLVVEGQEVLKFAIAYGFRNIQSIMTKIRRNKCQYHYVEIMACPSGCLNGGGQIKPKSS--------LEANALLENVTARFQELQVRSPLDNPACRYVYDKYLEGEPFSASARRALHTQYHAVPKLEQSNPLGIKW 519          
BLAST of mRNA_S-firma_F_contig10404.588.1 vs. uniprot
Match: F0WK24_9STRA (Nuclear prelamin A recognition factorlike protein pu n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WK24_9STRA)

HSP 1 Score: 209 bits (532), Expect = 1.960e-60
Identity = 127/292 (43.49%), Postives = 168/292 (57.53%), Query Frame = 1
Query:    1 QITGTQVKDLFAPAG-VTRDKIHHTTIMPCFDKKLEASRVDFTDTLLSARDVDCVLTSAELVDVFTEQAIDFAALPETDIVPSADLAGAGAPSVDLERFLCSVSDDGTQLVGPVAASAGSGGFLDYVFRAAAAALHGVVLEGSLEFKAGRNPDFSEVTLEVDGAVVLQFAKAYGFRNISSVVTKMKRGRSPYHFIEIMACPSGCTNGGGQVKLAAHEDGTLVTPSESRALVSKVDGLLHDRAHLPAPDSEASKVTYSRVGGGPGSEAARRVLHTQFRAVPKLP-AEALAMKW 870
            QI GT VKD  +    +  D++ H T+MPCFDKKLEASR DF  +    RDVDCVL ++EL+D+F  Q I+F  L E  +                E  +  +S DG Q+V   +  A SGG L+++FR AA  L  V + G LE+  GRNPDF EV+L + G VVL FA AYGFRNI SV+TK++RG+  YH++E+MACPSGC NGGGQ+K ++          ES  LVS V     +            K  Y +    P S+ A+R LHT++R VPKL  A  L ++W
Sbjct:  249 QIAGTIVKDFLSREFLIESDQVFHVTLMPCFDKKLEASRKDFQRSE-DNRDVDCVLATSELIDLFQAQKIEFKDLKEASLTQK-------------EAQMSGISPDG-QIVYGSSPFASSGGQLEHIFRYAAKNLFNVDICGPLEYSIGRNPDFREVSLSIQGKVVLHFAIAYGFRNIQSVITKLRRGKCSYHYVEVMACPSGCLNGGGQIKPSSS--------LESSTLVSSVTKRFQELREYDPQKDAFCKYIYEKYFDKPFSQVAQRALHTKYRRVPKLEQANPLGIRW 517          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10404.588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067CH85_SAPPC3.450e-6644.52Fe_hyd_SSU domain-containing protein n=2 Tax=Sapro... [more]
A0A5D6XLY1_9STRA8.090e-6544.71Fe_hyd_SSU domain-containing protein n=1 Tax=Pythi... [more]
A0A3R7KXU8_9STRA1.200e-6445.58Fe_hyd_SSU domain-containing protein n=3 Tax=Phyto... [more]
A0A662WUJ6_9STRA2.070e-6445.39Fe_hyd_SSU domain-containing protein n=2 Tax=Notho... [more]
H3GG46_PHYRM4.090e-6445.21Fe_hyd_SSU domain-containing protein n=19 Tax=Phyt... [more]
A0A3M6VN20_9STRA7.230e-6443.69Fe_hyd_SSU domain-containing protein n=1 Tax=Peron... [more]
A0A8K1CNM2_PYTOL5.110e-6244.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4BN82_HYAAE2.500e-6142.66Fe_hyd_SSU domain-containing protein n=1 Tax=Hyalo... [more]
A0A2D4BNQ6_PYTIN1.530e-6044.37Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
F0WK24_9STRA1.960e-6043.49Nuclear prelamin A recognition factorlike protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10404contigS-firma_F_contig10404:3077..4074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog112098.XP_008610635.1
PFAMsFe_hyd_SSU,Fe_hyd_lg_C
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0009628,GO:0016491,GO:0016651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050896,GO:0051536,GO:0051540,GO:0055114,GO:0070482
Evalue1.03e-67
EggNOG OGsCOG4624@1|root,KOG2439@2759|Eukaryota
Descriptioniron-sulfur cluster assembly
COG categoryC
Hectar predicted targeting categoryother localisation
Exons3
Model size873
Cds size873
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10404.588.1prot_S-firma_F_contig10404.588.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10404 3077..4074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.3277972-CDS-S-firma_F_contig10404:3076..34131622815574.3277972-CDS-S-firma_F_contig10404:3076..3413Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10404 3077..3413 +
1696949427.3887405-CDS-S-firma_F_contig10404:3076..34131696949427.3887405-CDS-S-firma_F_contig10404:3076..3413Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10404 3077..3413 +
1622815574.341769-CDS-S-firma_F_contig10404:3473..37381622815574.341769-CDS-S-firma_F_contig10404:3473..3738Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10404 3474..3738 +
1696949427.399421-CDS-S-firma_F_contig10404:3473..37381696949427.399421-CDS-S-firma_F_contig10404:3473..3738Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10404 3474..3738 +
1622815574.3545773-CDS-S-firma_F_contig10404:3803..40741622815574.3545773-CDS-S-firma_F_contig10404:3803..4074Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10404 3804..4074 +
1696949427.4087608-CDS-S-firma_F_contig10404:3803..40741696949427.4087608-CDS-S-firma_F_contig10404:3803..4074Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10404 3804..4074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10404.588.1

>prot_S-firma_F_contig10404.588.1 ID=prot_S-firma_F_contig10404.588.1|Name=mRNA_S-firma_F_contig10404.588.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=291bp
QITGTQVKDLFAPAGVTRDKIHHTTIMPCFDKKLEASRVDFTDTLLSARD
VDCVLTSAELVDVFTEQAIDFAALPETDIVPSADLAGAGAPSVDLERFLC
SVSDDGTQLVGPVAASAGSGGFLDYVFRAAAAALHGVVLEGSLEFKAGRN
PDFSEVTLEVDGAVVLQFAKAYGFRNISSVVTKMKRGRSPYHFIEIMACP
SGCTNGGGQVKLAAHEDGTLVTPSESRALVSKVDGLLHDRAHLPAPDSEA
SKVTYSRVGGGPGSEAARRVLHTQFRAVPKLPAEALAMKW*
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mRNA from alignment at S-firma_F_contig10404:3077..4074+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10404.588.1 ID=mRNA_S-firma_F_contig10404.588.1|Name=mRNA_S-firma_F_contig10404.588.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=998bp|location=Sequence derived from alignment at S-firma_F_contig10404:3077..4074+ (Sphaerotrichia firma ET2_F female)
CAGATCACTGGGACCCAGGTGAAGGACCTGTTCGCCCCAGCTGGCGTCAC CCGCGACAAAATCCACCACACCACCATCATGCCCTGCTTTGACAAGAAGC TTGAGGCCTCCAGGGTGGACTTCACGGACACCCTGCTGTCCGCTCGTGAC GTTGACTGCGTGTTGACCAGTGCAGAGCTGGTGGACGTCTTTACGGAGCA GGCCATTGACTTTGCGGCCCTGCCGGAGACGGACATTGTGCCCAGCGCGG ACCTTGCAGGAGCCGGGGCTCCTTCGGTAGACCTGGAGCGCTTCCTGTGC AGTGTGTCTGACGACGGCACGCAGCTCGTTGGGCCAGGTGTGTGTGTTGT GCGTGCGTGTGTGCCTCCATGCCGGCGCCTTGACGCACGTCCTCCAGTGG CTGCTTCTGCTGGGTCCGGTGGGTTCTTGGATTACGTGTTCCGGGCGGCG GCCGCGGCCCTGCACGGCGTTGTGTTGGAGGGCTCGCTGGAGTTCAAGGC GGGGCGCAACCCAGACTTTTCAGAGGTGACGCTGGAGGTCGACGGCGCCG TCGTCCTCCAGTTTGCCAAGGCGTACGGCTTCCGCAACATTTCGTCCGTG GTGACCAAGATGAAGCGGGGCCGCTCCCCGTACCACTTTATTGAGATTAT GGCTTGCCCAAGGTGTGTAGTGTTTAGTGTTTGTGCGCGTCCAGGTGTCC CGTTGTACCTGACCTCGGTGTCTGCAGTGGCTGCACCAACGGCGGCGGGC AGGTCAAGCTGGCGGCCCACGAGGACGGCACGCTTGTGACGCCCTCAGAG TCCCGGGCGTTGGTGTCCAAGGTGGACGGCCTCCTCCACGACCGCGCCCA CTTGCCGGCGCCTGACTCGGAAGCGTCAAAGGTCACGTACAGCAGGGTAG GGGGCGGCCCGGGGTCAGAAGCCGCCCGCCGGGTGCTGCACACCCAGTTC CGGGCGGTGCCCAAGCTGCCTGCGGAGGCGCTGGCCATGAAGTGGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10404:3077..4074+

>mRNA_S-firma_F_contig10404.588.1 ID=mRNA_S-firma_F_contig10404.588.1|Name=mRNA_S-firma_F_contig10404.588.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1746bp|location=Sequence derived from alignment at S-firma_F_contig10404:3077..4074+ (Sphaerotrichia firma ET2_F female)
CAGATCACTGGGACCCAGGTGAAGGACCTGTTCGCCCCAGCTGGCGTCAC
CCGCGACAAAATCCACCACACCACCATCATGCCCTGCTTTGACAAGAAGC
TTGAGGCCTCCAGGGTGGACTTCACGGACACCCTGCTGTCCGCTCGTGAC
GTTGACTGCGTGTTGACCAGTGCAGAGCTGGTGGACGTCTTTACGGAGCA
GGCCATTGACTTTGCGGCCCTGCCGGAGACGGACATTGTGCCCAGCGCGG
ACCTTGCAGGAGCCGGGGCTCCTTCGGTAGACCTGGAGCGCTTCCTGTGC
AGTGTGTCTGACGACGGCACGCAGCTCGTTGGGCCAGCAGATCACTGGGA
CCCAGGTGAAGGACCTGTTCGCCCCAGCTGGCGTCACCCGCGACAAAATC
CACCACACCACCATCATGCCCTGCTTTGACAAGAAGCTTGAGGCCTCCAG
GGTGGACTTCACGGACACCCTGCTGTCCGCTCGTGACGTTGACTGCGTGT
TGACCAGTGCAGAGCTGGTGGACGTCTTTACGGAGCAGGCCATTGACTTT
GCGGCCCTGCCGGAGACGGACATTGTGCCCAGCGCGGACCTTGCAGGAGC
CGGGGCTCCTTCGGTAGACCTGGAGCGCTTCCTGTGCAGTGTGTCTGACG
ACGGCACGCAGCTCGTTGGGCCAGTGGCTGCTTCTGCTGGGTCCGGTGGG
TTCTTGGATTACGTGTTCCGGGCGGCGGCCGCGGCCCTGCACGGCGTTGT
GTTGGAGGGCTCGCTGGAGTTCAAGGCGGGGCGCAACCCAGACTTTTCAG
AGGTGACGCTGGAGGTCGACGGCGCCGTCGTCCTCCAGTTTGCCAAGGCG
TACGGCTTCCGCAACATTTCGTCCGTGGTGACCAAGATGAAGCGGGGCCG
CTCCCCGTACCACTTTATTGAGATTATGGCTTGCCCAAGTGGCTGCTTCT
GCTGGGTCCGGTGGGTTCTTGGATTACGTGTTCCGGGCGGCGGCCGCGGC
CCTGCACGGCGTTGTGTTGGAGGGCTCGCTGGAGTTCAAGGCGGGGCGCA
ACCCAGACTTTTCAGAGGTGACGCTGGAGGTCGACGGCGCCGTCGTCCTC
CAGTTTGCCAAGGCGTACGGCTTCCGCAACATTTCGTCCGTGGTGACCAA
GATGAAGCGGGGCCGCTCCCCGTACCACTTTATTGAGATTATGGCTTGCC
CAAGTGGCTGCACCAACGGCGGCGGGCAGGTCAAGCTGGCGGCCCACGAG
GACGGCACGCTTGTGACGCCCTCAGAGTCCCGGGCGTTGGTGTCCAAGGT
GGACGGCCTCCTCCACGACCGCGCCCACTTGCCGGCGCCTGACTCGGAAG
CGTCAAAGGTCACGTACAGCAGGGTAGGGGGCGGCCCGGGGTCAGAAGCC
GCCCGCCGGGTGCTGCACACCCAGTTCCGGGCGGTGCCCAAGCTGCCTGC
GGAGGCGCTGGCCATGAAGTGGTAGTGGCTGCACCAACGGCGGCGGGCAG
GTCAAGCTGGCGGCCCACGAGGACGGCACGCTTGTGACGCCCTCAGAGTC
CCGGGCGTTGGTGTCCAAGGTGGACGGCCTCCTCCACGACCGCGCCCACT
TGCCGGCGCCTGACTCGGAAGCGTCAAAGGTCACGTACAGCAGGGTAGGG
GGCGGCCCGGGGTCAGAAGCCGCCCGCCGGGTGCTGCACACCCAGTTCCG
GGCGGTGCCCAAGCTGCCTGCGGAGGCGCTGGCCATGAAGTGGTAG
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