mRNA_S-firma_F_contig10393.564.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10393.564.1
Unique NamemRNA_S-firma_F_contig10393.564.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10393.564.1 vs. uniprot
Match: A0A6H5JTW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW2_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.330e-34
Identity = 79/125 (63.20%), Postives = 93/125 (74.40%), Query Frame = 1 
Query:  607 FSFAAVEDELQSRSGAKT-TTPGDGAGDG----ADD-ESRWLPRLFPPR------EDGDVVQPLVELPLDGVLLQLFPALLIGVVGLLLTIAVQVETSRFDGMVGEDGGAVVVTDLRDMTTEQQP 945
            FS +A+EDELQ+R+  K  TT  DGA  G    AD+ E  WLPR FPP       E+GD +QPL+ELPLDG+LLQLFPALLIGV+GL LT+ +QVE  RFDGMVGEDGG VVVTDLRD  T++QP
Sbjct:  161 FSVSALEDELQARAAQKAATTQRDGARSGGGTTADEGEDAWLPRFFPPPLPTQDDEEGDAIQPLIELPLDGILLQLFPALLIGVLGLFLTVVIQVEAGRFDGMVGEDGGVVVVTDLRDTRTQEQP 285
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10393.564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTW2_9PHAE2.330e-3463.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10393contigS-firma_F_contig10393:3001..4775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size1775
Cds size900
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10393.564.1prot_S-firma_F_contig10393.564.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10393 3049..3948 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.9397295-UTR-S-firma_F_contig10393:3000..30481622815571.9397295-UTR-S-firma_F_contig10393:3000..3048Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10393 3001..3048 +
1696949425.1519754-UTR-S-firma_F_contig10393:3000..30481696949425.1519754-UTR-S-firma_F_contig10393:3000..3048Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10393 3001..3048 +
1622815571.9644592-UTR-S-firma_F_contig10393:3948..47751622815571.9644592-UTR-S-firma_F_contig10393:3948..4775Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10393 3949..4775 +
1696949425.1792781-UTR-S-firma_F_contig10393:3948..47751696949425.1792781-UTR-S-firma_F_contig10393:3948..4775Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10393 3949..4775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.9517324-CDS-S-firma_F_contig10393:3048..39481622815571.9517324-CDS-S-firma_F_contig10393:3048..3948Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10393 3049..3948 +
1696949425.1677208-CDS-S-firma_F_contig10393:3048..39481696949425.1677208-CDS-S-firma_F_contig10393:3048..3948Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10393 3049..3948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10393.564.1

>prot_S-firma_F_contig10393.564.1 ID=prot_S-firma_F_contig10393.564.1|Name=mRNA_S-firma_F_contig10393.564.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=300bp
MGSEVQHLQTAIPRNLRVAVVAPAMTQHEPLLARWQQAHIKRRPAAGNTS
LVVAAVVMLALLAVPAKGGSARLAFSSPELLLSSTARLRRRSEEVVTMVQ
RSTSTAASPPEFVRIACAGSGNPRQGSLGPGARASNIRSPWSSERAAGVV
CGAVGDGNNGGDDGNSLFGDDDKQQDNTPDEDDPPMFSFAAVEDELQSRS
GAKTTTPGDGAGDGADDESRWLPRLFPPREDGDVVQPLVELPLDGVLLQL
FPALLIGVVGLLLTIAVQVETSRFDGMVGEDGGAVVVTDLRDMTTEQQP*
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mRNA from alignment at S-firma_F_contig10393:3001..4775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10393.564.1 ID=mRNA_S-firma_F_contig10393.564.1|Name=mRNA_S-firma_F_contig10393.564.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1775bp|location=Sequence derived from alignment at S-firma_F_contig10393:3001..4775+ (Sphaerotrichia firma ET2_F female)
CGGCCACGGCGCCACATCACGGCAAGAAGCTCTCGGGACAAGCAACGGAT
GGGGAGCGAGGTACAACATTTGCAGACTGCAATTCCACGGAATCTGCGAG
TCGCGGTAGTTGCTCCCGCGATGACACAACATGAACCATTATTGGCACGC
TGGCAGCAAGCCCACATCAAGCGCAGACCAGCCGCAGGAAACACATCGTT
GGTAGTGGCAGCGGTGGTAATGCTTGCACTATTGGCTGTTCCCGCGAAAG
GCGGATCTGCTCGTTTAGCGTTTTCATCGCCGGAGCTGCTCCTGTCCTCT
ACTGCGAGGTTGCGGCGGCGGTCGGAAGAAGTCGTGACGATGGTGCAACG
TTCAACCTCGACGGCCGCATCACCGCCAGAATTCGTCAGGATAGCATGTG
CCGGAAGCGGTAACCCAAGACAAGGAAGCTTGGGCCCCGGAGCAAGGGCA
AGCAATATTCGTAGTCCGTGGTCGTCGGAACGGGCGGCAGGCGTAGTTTG
TGGAGCTGTCGGCGACGGCAACAACGGCGGCGATGACGGCAACAGCTTGT
TCGGTGATGATGACAAACAACAGGACAATACCCCCGATGAGGATGACCCG
CCGATGTTTTCCTTCGCCGCGGTCGAAGACGAACTTCAATCTCGATCCGG
GGCGAAGACAACGACCCCGGGGGATGGTGCTGGAGACGGGGCTGACGACG
AGAGCCGGTGGCTGCCACGTTTGTTTCCGCCGCGCGAAGACGGCGACGTC
GTCCAGCCTTTGGTCGAGCTCCCGCTTGACGGAGTCCTGTTGCAGCTGTT
CCCGGCGCTGCTGATAGGGGTGGTCGGGCTTCTCCTGACGATCGCCGTGC
AGGTGGAGACAAGCAGGTTCGATGGCATGGTGGGTGAGGATGGCGGAGCT
GTTGTCGTCACTGATCTGCGGGACATGACAACAGAACAGCAGCCATGACG
AATCGCAGGGAGCACGCTACAAAGAAAGCGTGAATGAGCGCCTTCTTTAT
GAATGCTAGGGTGAGGAGAATCAGGGCGGATGGTGCAATGTTGCACACCA
CTTCAGCGTCGTCATTAAGCGCAGACCCTTCCTGGTCGTACCGTAAGTAC
GAGCGTGTGTCTTATTGTTGGCCTTTCATGGGCAGCAGATTACAGTGTTT
TGTTGTTGCAGAGATGCGTTGTCGAACGAGGATTCGGTCTCGGGTGATCC
ATGAACGGACCCGTCCGTGCGGTTGATCGATGTTCATGTGGCAGTAGTAA
TTCCGGCACATGGGGGAACAGGTTCTGCCGCTTGTTGCGAGAAGCTTCTT
TCGTCGGTGTTCTCAGGTTCTTGCTTTCAGCAAAATGCAACGAGACTCCG
GGGGTGCTGTGGTTTCCGTAACCTATTGTACGATCATCATTCGGCTGTTG
ATCTACATATGTTCTAACTCGTCGAGCGAGCAGAGCGCGTCGGCATCTGG
TGTGCTTGCGGCACGCTGGGGGTGGGTGCTGTTGTTGGGCAATAAGTCTT
CCTCCCCCTGGAGGAAAGGTTCGTCGATCGCCTTGCGGCGGTGAGGAAAC
ACGTCAAACCCAACACCCCCCGCCAGCCAACTCCCCTCCTGCGCGCGGCA
CCCGCCCTCGGGAGGGGCTGTTTCTTGTGTCGTTTCGTTGATTTCCGCGT
ACGCGCACTTCCCCTGAGGGTCATTTCGAGCAGAAATTCTAGCAGTCCAG
CCCTTGGCCCAACCAGACAAACAAGTAACTCCTCGGTTCAACCGTCTCTT
TGTTCGTCTTCCTCAACAATTTTCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10393:3001..4775+

>mRNA_S-firma_F_contig10393.564.1 ID=mRNA_S-firma_F_contig10393.564.1|Name=mRNA_S-firma_F_contig10393.564.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1800bp|location=Sequence derived from alignment at S-firma_F_contig10393:3001..4775+ (Sphaerotrichia firma ET2_F female)
ATGGGGAGCGAGGTACAACATTTGCAGACTGCAATTCCACGGAATCTGCG
AGTCGCGGTAGTTGCTCCCGCGATGACACAACATGAACCATTATTGGCAC
GCTGGCAGCAAGCCCACATCAAGCGCAGACCAGCCGCAGGAAACACATCG
TTGGTAGTGGCAGCGGTGGTAATGCTTGCACTATTGGCTGTTCCCGCGAA
AGGCGGATCTGCTCGTTTAGCGTTTTCATCGCCGGAGCTGCTCCTGTCCT
CTACTGCGAGGTTGCGGCGGCGGTCGGAAGAAGTCGTGACGATGGTGCAA
CGTTCAACCTCGACGGCCGCATCACCGCCAGAATTCGTCAGGATAGCATG
TGCCGGAAGCGGTAACCCAAGACAAGGAAGCTTGGGCCCCGGAGCAAGGG
CAAGCAATATTCGTAGTCCGTGGTCGTCGGAACGGGCGGCAGGCGTAGTT
TGTGGAGCTGTCGGCGACGGCAACAACGGCGGCGATGACGGCAACAGCTT
GTTCGGTGATGATGACAAACAACAGGACAATACCCCCGATGAGGATGACC
CGCCGATGTTTTCCTTCGCCGCGGTCGAAGACGAACTTCAATCTCGATCC
GGGGCGAAGACAACGACCCCGGGGGATGGTGCTGGAGACGGGGCTGACGA
CGAGAGCCGGTGGCTGCCACGTTTGTTTCCGCCGCGCGAAGACGGCGACG
TCGTCCAGCCTTTGGTCGAGCTCCCGCTTGACGGAGTCCTGTTGCAGCTG
TTCCCGGCGCTGCTGATAGGGGTGGTCGGGCTTCTCCTGACGATCGCCGT
GCAGGTGGAGACAAGCAGGTTCGATGGCATGGTGGGTGAGGATGGCGGAG
CTGTTGTCGTCACTGATCTGCGGGACATGACAACAGAACAGCAGCCATGA
ATGGGGAGCGAGGTACAACATTTGCAGACTGCAATTCCACGGAATCTGCG
AGTCGCGGTAGTTGCTCCCGCGATGACACAACATGAACCATTATTGGCAC
GCTGGCAGCAAGCCCACATCAAGCGCAGACCAGCCGCAGGAAACACATCG
TTGGTAGTGGCAGCGGTGGTAATGCTTGCACTATTGGCTGTTCCCGCGAA
AGGCGGATCTGCTCGTTTAGCGTTTTCATCGCCGGAGCTGCTCCTGTCCT
CTACTGCGAGGTTGCGGCGGCGGTCGGAAGAAGTCGTGACGATGGTGCAA
CGTTCAACCTCGACGGCCGCATCACCGCCAGAATTCGTCAGGATAGCATG
TGCCGGAAGCGGTAACCCAAGACAAGGAAGCTTGGGCCCCGGAGCAAGGG
CAAGCAATATTCGTAGTCCGTGGTCGTCGGAACGGGCGGCAGGCGTAGTT
TGTGGAGCTGTCGGCGACGGCAACAACGGCGGCGATGACGGCAACAGCTT
GTTCGGTGATGATGACAAACAACAGGACAATACCCCCGATGAGGATGACC
CGCCGATGTTTTCCTTCGCCGCGGTCGAAGACGAACTTCAATCTCGATCC
GGGGCGAAGACAACGACCCCGGGGGATGGTGCTGGAGACGGGGCTGACGA
CGAGAGCCGGTGGCTGCCACGTTTGTTTCCGCCGCGCGAAGACGGCGACG
TCGTCCAGCCTTTGGTCGAGCTCCCGCTTGACGGAGTCCTGTTGCAGCTG
TTCCCGGCGCTGCTGATAGGGGTGGTCGGGCTTCTCCTGACGATCGCCGT
GCAGGTGGAGACAAGCAGGTTCGATGGCATGGTGGGTGAGGATGGCGGAG
CTGTTGTCGTCACTGATCTGCGGGACATGACAACAGAACAGCAGCCATGA
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