prot_S-firma_F_contig10393.564.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10393.564.1
Unique Nameprot_S-firma_F_contig10393.564.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length300
Homology
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BLAST of mRNA_S-firma_F_contig10393.564.1 vs. uniprot
Match: A0A6H5JTW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW2_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 2.300e-36
Identity = 79/125 (63.20%), Postives = 93/125 (74.40%), Query Frame = 0 
Query:  187 FSFAAVEDELQSRSGAKT-TTPGDGAGDG----ADD-ESRWLPRLFPPR------EDGDVVQPLVELPLDGVLLQLFPALLIGVVGLLLTIAVQVETSRFDGMVGEDGGAVVVTDLRDMTTEQQP 299
            FS +A+EDELQ+R+  K  TT  DGA  G    AD+ E  WLPR FPP       E+GD +QPL+ELPLDG+LLQLFPALLIGV+GL LT+ +QVE  RFDGMVGEDGG VVVTDLRD  T++QP
Sbjct:  161 FSVSALEDELQARAAQKAATTQRDGARSGGGTTADEGEDAWLPRFFPPPLPTQDDEEGDAIQPLIELPLDGILLQLFPALLIGVLGLFLTVVIQVEAGRFDGMVGEDGGVVVVTDLRDTRTQEQP 285
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10393.564.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTW2_9PHAE2.300e-3663.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 246..267
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 67..245
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..44
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 45..66
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 268..299
NoneNo IPR availableTMHMMTMhelixcoord: 245..267
NoneNo IPR availableTMHMMTMhelixcoord: 44..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10393contigS-firma_F_contig10393:3049..3948 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10393.564.1mRNA_S-firma_F_contig10393.564.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10393 3001..4775 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10393.564.1 ID=prot_S-firma_F_contig10393.564.1|Name=mRNA_S-firma_F_contig10393.564.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=300bp
MGSEVQHLQTAIPRNLRVAVVAPAMTQHEPLLARWQQAHIKRRPAAGNTS
LVVAAVVMLALLAVPAKGGSARLAFSSPELLLSSTARLRRRSEEVVTMVQ
RSTSTAASPPEFVRIACAGSGNPRQGSLGPGARASNIRSPWSSERAAGVV
CGAVGDGNNGGDDGNSLFGDDDKQQDNTPDEDDPPMFSFAAVEDELQSRS
GAKTTTPGDGAGDGADDESRWLPRLFPPREDGDVVQPLVELPLDGVLLQL
FPALLIGVVGLLLTIAVQVETSRFDGMVGEDGGAVVVTDLRDMTTEQQP*
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