mRNA_S-firma_F_contig1039.560.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1039.560.1
Unique NamemRNA_S-firma_F_contig1039.560.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: D7FLF9_ECTSI (Flap endonuclease 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLF9_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.050e-30
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPV 165
            LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPV
Sbjct:  219 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPV 273
[Close]
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A1C8V7E6_9CUCU (Flap endonuclease 1 (Fragment) n=1 Tax=Triozastus marshalli TaxID=1689898 RepID=A0A1C8V7E6_9CUCU)

HSP 1 Score: 90.9 bits (224), Expect = 4.210e-22
Identity = 37/54 (68.52%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYP 162
            L+LSH++FVDLC+L GCDYT SIKGIGPKK++ L+++H +IEEI+KHLD +KYP
Sbjct:   55 LQLSHQQFVDLCILMGCDYTDSIKGIGPKKSIELIKKHSSIEEILKHLDKEKYP 108
[Close]
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A7S2JCY8_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JCY8_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 9.940e-22
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPV 165
            L+L+HE+F+DLC+LCGCDYT SIKGIGP +AL L+R+HG+IE IIK LD KKYP+
Sbjct:   36 LQLTHEQFIDLCILCGCDYTDSIKGIGPIRALDLIRKHGSIEAIIKVLDTKKYPL 90
[Close]
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A1C8V7E7_9CUCU (Flap endonuclease 1 (Fragment) n=1 Tax=Cnemonyx vismiacolens TaxID=1843167 RepID=A0A1C8V7E7_9CUCU)

HSP 1 Score: 88.2 bits (217), Expect = 3.720e-21
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYP 162
            L LSH++F+DLC+L GCDYT SI+GIGPKK++ L+RQH +IEEI+KH+D  KYP
Sbjct:   50 LNLSHKEFIDLCILMGCDYTDSIRGIGPKKSIDLIRQHKSIEEILKHIDKDKYP 103
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BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A0J8B0R1_BETVV (Uncharacterized protein (Fragment) n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B0R1_BETVV)

HSP 1 Score: 87.8 bits (216), Expect = 1.220e-20
Identity = 35/55 (63.64%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPV 165
            L+LS  +F +LC+LCGCDYTGSI+GIGP+KAL+L++QHG+I++ +KH+D  KYPV
Sbjct:    7 LDLSMVQFRELCILCGCDYTGSIRGIGPQKALSLIKQHGSIDDALKHIDTTKYPV 61
[Close]
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A3Q9JQJ4_9CUCU (Flap endonuclease 1 (Fragment) n=1 Tax=Ernoporus tiliae TaxID=479297 RepID=A0A3Q9JQJ4_9CUCU)

HSP 1 Score: 84.3 bits (207), Expect = 1.020e-19
Identity = 34/54 (62.96%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYP 162
            L L+H++F+DLC+L GCDYT SI+GIGPKK++ L+R+H +IEEI+K +D KKYP
Sbjct:   38 LNLTHKEFIDLCILMGCDYTDSIRGIGPKKSIELIRKHKSIEEILKSVDLKKYP 91
[Close]
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A7R8ZWJ9_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZWJ9_9CRUS)

HSP 1 Score: 85.9 bits (211), Expect = 1.080e-19
Identity = 35/54 (64.81%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYP 162
            LEL+H++FVDLC+L GCDYT SI+G+GPK+A+ L+R H +IE ++K LDAKKYP
Sbjct:   69 LELTHDQFVDLCILLGCDYTDSIRGVGPKRAIELIRTHKSIEAVLKALDAKKYP 122
[Close]
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A6S7G635_PARCT (Flap endonuclease 1-like (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G635_PARCT)

HSP 1 Score: 87.8 bits (216), Expect = 1.640e-19
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPV 165
            L LS ++F+DLC+L GCDY  SIKGIGPK+A+ L+RQH TIE IIKH+D+KKYP+
Sbjct:  134 LSLSKDEFIDLCILLGCDYCDSIKGIGPKRAIDLIRQHRTIEGIIKHIDSKKYPI 188
[Close]
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A1C8V7E5_9CUCU (Flap endonuclease 1 (Fragment) n=1 Tax=Camptocerus aeneipennis TaxID=1002003 RepID=A0A1C8V7E5_9CUCU)

HSP 1 Score: 83.6 bits (205), Expect = 2.400e-19
Identity = 34/54 (62.96%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYP 162
            L LS ++F+DLC+L GCDYT SI+GIGPKK++ L+RQH +IEEI+KH+D  K+P
Sbjct:   44 LNLSQKEFIDLCILMGCDYTDSIRGIGPKKSIDLIRQHRSIEEILKHIDKDKFP 97
[Close]
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: UPI000359B596 (flap endonuclease 1 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359B596)

HSP 1 Score: 87.8 bits (216), Expect = 3.620e-19
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPV 165
            L LS ++F+DLC+L GCDY  SIKGIGPK+A+ L++QH +IEEI+KHLD KKYPV
Sbjct:  216 LALSQDEFIDLCILLGCDYCDSIKGIGPKRAIELIKQHRSIEEILKHLDKKKYPV 270
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF9_ECTSI5.050e-30100.00Flap endonuclease 1 n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A1C8V7E6_9CUCU4.210e-2268.52Flap endonuclease 1 (Fragment) n=1 Tax=Triozastus ... [more]
A0A7S2JCY8_9EUKA9.940e-2270.91Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A1C8V7E7_9CUCU3.720e-2166.67Flap endonuclease 1 (Fragment) n=1 Tax=Cnemonyx vi... [more]
A0A0J8B0R1_BETVV1.220e-2063.64Uncharacterized protein (Fragment) n=2 Tax=Beta vu... [more]
A0A3Q9JQJ4_9CUCU1.020e-1962.96Flap endonuclease 1 (Fragment) n=1 Tax=Ernoporus t... [more]
A0A7R8ZWJ9_9CRUS1.080e-1964.81Hypothetical protein (Fragment) n=1 Tax=Cyprideis ... [more]
A0A6S7G635_PARCT1.640e-1967.27Flap endonuclease 1-like (Fragment) n=2 Tax=Paramu... [more]
A0A1C8V7E5_9CUCU2.400e-1962.96Flap endonuclease 1 (Fragment) n=1 Tax=Camptocerus... [more]
UPI000359B5963.620e-1967.27flap endonuclease 1 n=1 Tax=Aplysia californica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1039contigS-firma_F_contig1039:24526..25037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FLF9
Preferred nameFEN1
PFAMsXPG_I,XPG_N
Max annot lvl2759|Eukaryota
KEGG koko:K04799
KEGG Pathwayko03030,ko03410,ko03450,map03030,map03410,map03450
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000287,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000731,GO:0000734,GO:0000737,GO:0001302,GO:0001654,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004521,GO:0004523,GO:0004527,GO:0004529,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006284,GO:0006286,GO:0006302,GO:0006303,GO:0006308,GO:0006309,GO:0006310,GO:0006312,GO:0006401,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007063,GO:0007275,GO:0007423,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0007568,GO:0007569,GO:0007610,GO:0007611,GO:0007613,GO:0008150,GO:0008152,GO:0008219,GO:0008297,GO:0008309,GO:0008409,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009987,GO:0010564,GO:0010638,GO:0012501,GO:0016043,GO:0016070,GO:0016311,GO:0016787,GO:0016788,GO:0016796,GO:0016888,GO:0016891,GO:0016893,GO:0016895,GO:0017108,GO:0018130,GO:0019438,GO:0019439,GO:0019725,GO:0022402,GO:0022411,GO:0022413,GO:0022414,GO:0022616,GO:0030145,GO:0030154,GO:0030262,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032501,GO:0032502,GO:0032505,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0034655,GO:0035312,GO:0035753,GO:0035822,GO:0035861,GO:0042592,GO:0043010,GO:0043137,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045145,GO:0045165,GO:0045787,GO:0045876,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0048256,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051128,GO:0051130,GO:0051276,GO:0051716,GO:0051726,GO:0051908,GO:0051983,GO:0051984,GO:0060041,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0090068,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090734,GO:0097159,GO:0097194,GO:0098501,GO:0098502,GO:0104004,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902969,GO:1903047,GO:1903469,GO:1904162,GO:2001252
Evalue8.29e-31
EggNOG OGsCOG0258@1|root,KOG2519@2759|Eukaryota
Descriptionendonuclease activity
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionXPG-I domain
Ec32 orthologEc-12_008010.1
Exons2
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.7320845-CDS-S-firma_F_contig1039:24525..245791622815571.7320845-CDS-S-firma_F_contig1039:24525..24579Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1039 24526..24579 -
1696949424.988602-CDS-S-firma_F_contig1039:24525..245791696949424.988602-CDS-S-firma_F_contig1039:24525..24579Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1039 24526..24579 -
1622815571.74433-CDS-S-firma_F_contig1039:24926..250371622815571.74433-CDS-S-firma_F_contig1039:24926..25037Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1039 24927..25037 -
1696949425.000139-CDS-S-firma_F_contig1039:24926..250371696949425.000139-CDS-S-firma_F_contig1039:24926..25037Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1039 24927..25037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1039.560.1prot_S-firma_F_contig1039.560.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1039 24526..25037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1039.560.1

>prot_S-firma_F_contig1039.560.1 ID=prot_S-firma_F_contig1039.560.1|Name=mRNA_S-firma_F_contig1039.560.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=55bp
LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDA
KKYPV
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mRNA from alignment at S-firma_F_contig1039:24526..25037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1039.560.1 ID=mRNA_S-firma_F_contig1039.560.1|Name=mRNA_S-firma_F_contig1039.560.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=512bp|location=Sequence derived from alignment at S-firma_F_contig1039:24526..25037- (Sphaerotrichia firma ET2_F female)
CTGGAGCTCTCTCATGAGAAGTTTGTAGACCTCTGCGTTCTCTGCGGATG
TGACTACACTGGATCGATCAAAGGAATCGGCCCGAAAAAGGCGCTTGCAC
TCGTTCGCCAGGTGAGGGCCTGATAATTGCATGAACTCTGAGGACTACCC
ATGACGAGTACCCTTGTGCCAGAAACTGCAGCTAGAGGCATGAACTGCGC
GTCGCGAAGTGTACGCAAGCGCTCTGGCTGGAGAACATGGCTATTCGGAG
TGAATCGGAGGCTCGTTGTTCACACCTTAGCGTTGAGCTTTTGCCTGAAT
GCAATAAGCGCGCGGACTAAATTTGTTTGGAATATTGTATCTGGACATGT
GTCAGTGCCTCCGATGGAGTGCAATTGCACCTGAGGACAGTTTCGAACGA
TCGTGCACTTAAGACCTCGCGTTTGTCCATGCCCTTAACACGTGTTACTC
TATTTCAGCATGGCACCATCGAGGAGATCATCAAGCACCTGGACGCCAAG
AAGTACCCAGTG
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Coding sequence (CDS) from alignment at S-firma_F_contig1039:24526..25037-

>mRNA_S-firma_F_contig1039.560.1 ID=mRNA_S-firma_F_contig1039.560.1|Name=mRNA_S-firma_F_contig1039.560.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=330bp|location=Sequence derived from alignment at S-firma_F_contig1039:24526..25037- (Sphaerotrichia firma ET2_F female)
CTGGAGCTCTCTCATGAGAAGTTTGTAGACCTCTGCGTTCTCTGCGGATG
TGACTACACTGGATCGATCAAAGGAATCGGCCCGAAAAAGGCGCTTGCAC
TCGTTCGCCAGCTGGAGCTCTCTCATGAGAAGTTTGTAGACCTCTGCGTT
CTCTGCGGATGTGACTACACTGGATCGATCAAAGGAATCGGCCCGAAAAA
GGCGCTTGCACTCGTTCGCCAGCATGGCACCATCGAGGAGATCATCAAGC
ACCTGGACGCCAAGAAGTACCCAGTGCATGGCACCATCGAGGAGATCATC
AAGCACCTGGACGCCAAGAAGTACCCAGTG
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