prot_S-firma_F_contig1039.560.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1039.560.1
Unique Nameprot_S-firma_F_contig1039.560.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length55
Homology
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: D7FLF9_ECTSI (Flap endonuclease 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLF9_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.050e-30
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPV 55
            LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPV
Sbjct:  219 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPV 273          
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A1C8V7E6_9CUCU (Flap endonuclease 1 (Fragment) n=1 Tax=Triozastus marshalli TaxID=1689898 RepID=A0A1C8V7E6_9CUCU)

HSP 1 Score: 90.9 bits (224), Expect = 4.210e-22
Identity = 37/54 (68.52%), Postives = 49/54 (90.74%), Query Frame = 0
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYP 54
            L+LSH++FVDLC+L GCDYT SIKGIGPKK++ L+++H +IEEI+KHLD +KYP
Sbjct:   55 LQLSHQQFVDLCILMGCDYTDSIKGIGPKKSIELIKKHSSIEEILKHLDKEKYP 108          
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A7S2JCY8_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JCY8_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 9.940e-22
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPV 55
            L+L+HE+F+DLC+LCGCDYT SIKGIGP +AL L+R+HG+IE IIK LD KKYP+
Sbjct:   36 LQLTHEQFIDLCILCGCDYTDSIKGIGPIRALDLIRKHGSIEAIIKVLDTKKYPL 90          
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A1C8V7E7_9CUCU (Flap endonuclease 1 (Fragment) n=1 Tax=Cnemonyx vismiacolens TaxID=1843167 RepID=A0A1C8V7E7_9CUCU)

HSP 1 Score: 88.2 bits (217), Expect = 3.720e-21
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 0
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYP 54
            L LSH++F+DLC+L GCDYT SI+GIGPKK++ L+RQH +IEEI+KH+D  KYP
Sbjct:   50 LNLSHKEFIDLCILMGCDYTDSIRGIGPKKSIDLIRQHKSIEEILKHIDKDKYP 103          
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A0J8B0R1_BETVV (Uncharacterized protein (Fragment) n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B0R1_BETVV)

HSP 1 Score: 87.8 bits (216), Expect = 1.220e-20
Identity = 35/55 (63.64%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPV 55
            L+LS  +F +LC+LCGCDYTGSI+GIGP+KAL+L++QHG+I++ +KH+D  KYPV
Sbjct:    7 LDLSMVQFRELCILCGCDYTGSIRGIGPQKALSLIKQHGSIDDALKHIDTTKYPV 61          
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A3Q9JQJ4_9CUCU (Flap endonuclease 1 (Fragment) n=1 Tax=Ernoporus tiliae TaxID=479297 RepID=A0A3Q9JQJ4_9CUCU)

HSP 1 Score: 84.3 bits (207), Expect = 1.020e-19
Identity = 34/54 (62.96%), Postives = 47/54 (87.04%), Query Frame = 0
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYP 54
            L L+H++F+DLC+L GCDYT SI+GIGPKK++ L+R+H +IEEI+K +D KKYP
Sbjct:   38 LNLTHKEFIDLCILMGCDYTDSIRGIGPKKSIELIRKHKSIEEILKSVDLKKYP 91          
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A7R8ZWJ9_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZWJ9_9CRUS)

HSP 1 Score: 85.9 bits (211), Expect = 1.080e-19
Identity = 35/54 (64.81%), Postives = 47/54 (87.04%), Query Frame = 0
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYP 54
            LEL+H++FVDLC+L GCDYT SI+G+GPK+A+ L+R H +IE ++K LDAKKYP
Sbjct:   69 LELTHDQFVDLCILLGCDYTDSIRGVGPKRAIELIRTHKSIEAVLKALDAKKYP 122          
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A6S7G635_PARCT (Flap endonuclease 1-like (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G635_PARCT)

HSP 1 Score: 87.8 bits (216), Expect = 1.640e-19
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 0
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPV 55
            L LS ++F+DLC+L GCDY  SIKGIGPK+A+ L+RQH TIE IIKH+D+KKYP+
Sbjct:  134 LSLSKDEFIDLCILLGCDYCDSIKGIGPKRAIDLIRQHRTIEGIIKHIDSKKYPI 188          
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: A0A1C8V7E5_9CUCU (Flap endonuclease 1 (Fragment) n=1 Tax=Camptocerus aeneipennis TaxID=1002003 RepID=A0A1C8V7E5_9CUCU)

HSP 1 Score: 83.6 bits (205), Expect = 2.400e-19
Identity = 34/54 (62.96%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYP 54
            L LS ++F+DLC+L GCDYT SI+GIGPKK++ L+RQH +IEEI+KH+D  K+P
Sbjct:   44 LNLSQKEFIDLCILMGCDYTDSIRGIGPKKSIDLIRQHRSIEEILKHIDKDKFP 97          
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Match: UPI000359B596 (flap endonuclease 1 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359B596)

HSP 1 Score: 87.8 bits (216), Expect = 3.620e-19
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 0
Query:    1 LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPV 55
            L LS ++F+DLC+L GCDY  SIKGIGPK+A+ L++QH +IEEI+KHLD KKYPV
Sbjct:  216 LALSQDEFIDLCILLGCDYCDSIKGIGPKRAIELIKQHRSIEEILKHLDKKKYPV 270          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1039.560.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF9_ECTSI5.050e-30100.00Flap endonuclease 1 n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A1C8V7E6_9CUCU4.210e-2268.52Flap endonuclease 1 (Fragment) n=1 Tax=Triozastus ... [more]
A0A7S2JCY8_9EUKA9.940e-2270.91Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A1C8V7E7_9CUCU3.720e-2166.67Flap endonuclease 1 (Fragment) n=1 Tax=Cnemonyx vi... [more]
A0A0J8B0R1_BETVV1.220e-2063.64Uncharacterized protein (Fragment) n=2 Tax=Beta vu... [more]
A0A3Q9JQJ4_9CUCU1.020e-1962.96Flap endonuclease 1 (Fragment) n=1 Tax=Ernoporus t... [more]
A0A7R8ZWJ9_9CRUS1.080e-1964.81Hypothetical protein (Fragment) n=1 Tax=Cyprideis ... [more]
A0A6S7G635_PARCT1.640e-1967.27Flap endonuclease 1-like (Fragment) n=2 Tax=Paramu... [more]
A0A1C8V7E5_9CUCU2.400e-1962.96Flap endonuclease 1 (Fragment) n=1 Tax=Camptocerus... [more]
UPI000359B5963.620e-1967.27flap endonuclease 1 n=1 Tax=Aplysia californica Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008918Helix-hairpin-helix motif, class 2SMARTSM00279HhH_4coord: 5..38
e-value: 1.5E-11
score: 54.3
NoneNo IPR availableGENE3D1.10.150.20coord: 3..55
e-value: 2.4E-24
score: 87.2
NoneNo IPR availablePANTHERPTHR11081:SF51FLAP ENDONUCLEASE 1coord: 1..54
IPR006084XPG/Rad2 endonucleasePANTHERPTHR11081FLAP ENDONUCLEASE FAMILY MEMBERcoord: 1..54
IPR0362795'-3' exonuclease, C-terminal domain superfamilySUPERFAMILY478075' to 3' exonuclease, C-terminal subdomaincoord: 3..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1039contigS-firma_F_contig1039:24526..25037 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1039.560.1mRNA_S-firma_F_contig1039.560.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1039 24526..25037 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1039.560.1 ID=prot_S-firma_F_contig1039.560.1|Name=mRNA_S-firma_F_contig1039.560.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=55bp
LELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDA
KKYPV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0362795-3_exonuclease_C_sf
IPR006084XPG/Rad2
IPR008918HhH2