mRNA_S-firma_F_contig1037.525.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1037.525.1
Unique NamemRNA_S-firma_F_contig1037.525.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1037.525.1 vs. uniprot
Match: A0A835YQE8_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQE8_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.260e-33
Identity = 66/135 (48.89%), Postives = 92/135 (68.15%), Query Frame = 1 
Query:   28 VQNQFAVVLSWDEVRALQKLYGDPDTGGIDFMKFAVALGRSPGHGPEKARRAYNFLPKHTTEYDLNAIEKKIMHKLEDRCEVAGNYQYQWARRMLCDPTSTLAGGMDKEQLKLRLSGLLGVELSDGEMDALFRKH 432
            V++QFA+ L+ +E+ ALQ  Y     G +DF++FA AL ++P +G ++ R  +NFLP      DL  +E+ +  K+ DR  +AGNYQYQ A RMLCD    LAGGM +E LKLR+S LLGVE++D E+DALF K+
Sbjct:    2 VESQFALALTVEEMVALQTRYPGNQPGTVDFLQFAEALSKTPQYGLDRTRGCFNFLPASKGNRDLQGLERDMRQKITDRLHLAGNYQYQSAYRMLCDANYQLAGGMGREDLKLRVSELLGVEINDREVDALFSKY 136
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1037.525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YQE8_9STRA1.260e-3348.89EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1037contigS-firma_F_contig1037:5850..6894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog42099.EPrPV00000023341
PFAMsEF-hand_8
Max annot lvl121069|Pythiales
Evalue0.000125
EggNOG OGs2A7PW@1|root,2RYER@2759|Eukaryota,1ME7Z@121069|Pythiales
DescriptionSource PGD
COG categoryT
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_004420.1
Exons3
Model size444
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1037.525.1prot_S-firma_F_contig1037.525.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1037 5850..6894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.9954646-CDS-S-firma_F_contig1037:5849..59491622815568.9954646-CDS-S-firma_F_contig1037:5849..5949Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1037 5850..5949 +
1696949422.5387964-CDS-S-firma_F_contig1037:5849..59491696949422.5387964-CDS-S-firma_F_contig1037:5849..5949Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1037 5850..5949 +
1622815569.0234377-CDS-S-firma_F_contig1037:6264..64341622815569.0234377-CDS-S-firma_F_contig1037:6264..6434Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1037 6265..6434 +
1696949422.5559227-CDS-S-firma_F_contig1037:6264..64341696949422.5559227-CDS-S-firma_F_contig1037:6264..6434Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1037 6265..6434 +
1622815569.037258-CDS-S-firma_F_contig1037:6720..68941622815569.037258-CDS-S-firma_F_contig1037:6720..6894Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1037 6721..6894 +
1696949422.5641606-CDS-S-firma_F_contig1037:6720..68941696949422.5641606-CDS-S-firma_F_contig1037:6720..6894Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1037 6721..6894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1037.525.1

>prot_S-firma_F_contig1037.525.1 ID=prot_S-firma_F_contig1037.525.1|Name=mRNA_S-firma_F_contig1037.525.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=148bp
MSLEEFKRQVQNQFAVVLSWDEVRALQKLYGDPDTGGIDFMKFAVALGRS
PGHGPEKARRAYNFLPKHTTEYDLNAIEKKIMHKLEDRCEVAGNYQYQWA
RRMLCDPTSTLAGGMDKEQLKLRLSGLLGVELSDGEMDALFRKHADP*
back to top

mRNA from alignment at S-firma_F_contig1037:5850..6894+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1037.525.1 ID=mRNA_S-firma_F_contig1037.525.1|Name=mRNA_S-firma_F_contig1037.525.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1045bp|location=Sequence derived from alignment at S-firma_F_contig1037:5850..6894+ (Sphaerotrichia firma ET2_F female)
ATGTCCTTGGAAGAGTTCAAGCGGCAGGTGCAAAACCAGTTTGCTGTAGT
TCTGAGCTGGGACGAAGTTCGTGCGCTGCAAAAACTATACGGGGACCCAG
GTAAACTCCAGTGCAAATCAAGTCTGAACTACGCCGATCTCAGTGCCTAC
AGTGCGGCGTGTTCAAAGGGTATCCGTACACTTCTTTAGCACCTTCCTGA
TCAAAACTTTCCACCGGGGGTAAACCTGTACCACTACTGCTGTGCGGATG
TCAAGTTTCCCGAGGTGTGATTTGGTTCCCATCAATGTTATCGCTAAGAA
CCAAACCACACAGTAGTCCGGTATTCTCTCCTGCGACACAGACCATGGAA
CGACGCACAAATCGACTACTGGTACTCTACATCTGTTTGCTTGATTGCTC
GGCTCCTGGGGTTAGACACAGGCGGTATTGACTTCATGAAGTTTGCTGTT
GCCCTCGGGAGATCTCCGGGGCACGGGCCAGAAAAAGCAAGGCGCGCCTA
CAACTTCCTCCCGAAGCACACCACGGAATACGACCTGAACGCGATCGAGA
AGAAGATCATGCACAAGCTCGAGGATCGCTGCGAGGTGAAGCGATGCGCG
AGACCATGTACTCTAAAGTGTGCTGTGTTTCTTGAAGCATCAGCGGGAAT
GGTGTGCAATTTCTGAACCTTGCGTTTTTGACACACCTATCTATATCTCC
TGGTCCATTTCGCGTCGCTCCGCTTTTTGTATCCCTACCTCGCCGGCCAT
TCCAGCTGGATAAACTGCCATACATCGTCATCCCTCTTGCATCGTTTCAC
CAAACCAGCCCTGCTCCTGCCTCTGCCCCTGCCTCTCGGTCCGGTAACAA
ACGAAAATTGTTCCCAATAAGGTTGCGGGGAACTACCAGTACCAATGGGC
GAGGCGCATGCTTTGCGACCCGACATCCACGCTGGCTGGCGGAATGGACA
AGGAGCAGCTCAAGCTGCGGTTGAGTGGGCTTCTGGGGGTGGAGCTCAGC
GACGGAGAAATGGACGCGCTTTTCCGCAAACATGCTGACCCGTGA
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1037:5850..6894+

>mRNA_S-firma_F_contig1037.525.1 ID=mRNA_S-firma_F_contig1037.525.1|Name=mRNA_S-firma_F_contig1037.525.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=888bp|location=Sequence derived from alignment at S-firma_F_contig1037:5850..6894+ (Sphaerotrichia firma ET2_F female)
ATGTCCTTGGAAGAGTTCAAGCGGCAGGTGCAAAACCAGTTTGCTGTAGT
TCTGAGCTGGGACGAAGTTCGTGCGCTGCAAAAACTATACGGGGACCCAG
ATGTCCTTGGAAGAGTTCAAGCGGCAGGTGCAAAACCAGTTTGCTGTAGT
TCTGAGCTGGGACGAAGTTCGTGCGCTGCAAAAACTATACGGGGACCCAG
ACACAGGCGGTATTGACTTCATGAAGTTTGCTGTTGCCCTCGGGAGATCT
CCGGGGCACGGGCCAGAAAAAGCAAGGCGCGCCTACAACTTCCTCCCGAA
GCACACCACGGAATACGACCTGAACGCGATCGAGAAGAAGATCATGCACA
AGCTCGAGGATCGCTGCGAGACACAGGCGGTATTGACTTCATGAAGTTTG
CTGTTGCCCTCGGGAGATCTCCGGGGCACGGGCCAGAAAAAGCAAGGCGC
GCCTACAACTTCCTCCCGAAGCACACCACGGAATACGACCTGAACGCGAT
CGAGAAGAAGATCATGCACAAGCTCGAGGATCGCTGCGAGGTTGCGGGGA
ACTACCAGTACCAATGGGCGAGGCGCATGCTTTGCGACCCGACATCCACG
CTGGCTGGCGGAATGGACAAGGAGCAGCTCAAGCTGCGGTTGAGTGGGCT
TCTGGGGGTGGAGCTCAGCGACGGAGAAATGGACGCGCTTTTCCGCAAAC
ATGCTGACCCGTGAGTTGCGGGGAACTACCAGTACCAATGGGCGAGGCGC
ATGCTTTGCGACCCGACATCCACGCTGGCTGGCGGAATGGACAAGGAGCA
GCTCAAGCTGCGGTTGAGTGGGCTTCTGGGGGTGGAGCTCAGCGACGGAG
AAATGGACGCGCTTTTCCGCAAACATGCTGACCCGTGA
back to top