mRNA_S-firma_F_contig10342.487.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10342.487.1
Unique NamemRNA_S-firma_F_contig10342.487.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10342.487.1 vs. uniprot
Match: A0A7V3ACS9_9BACT (UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V3ACS9_9BACT)

HSP 1 Score: 154 bits (389), Expect = 3.900e-41
Identity = 106/253 (41.90%), Postives = 143/253 (56.52%), Query Frame = 1
Query:   13 IVTDFDTHATWMSSKCPSTVLFPRAFSA-EQGRLLMRK-DAPQTLSVLRGIPIVPSFREVPPPQERAQAL-NKALKGDGQPGLKPGRPTVVQMSSG---DDVVDVFTALLSATTPCNVVVVCGRQANVTAKLRRVADEAESPHCVSVVGFTKLIHLFFAAADLVISKPGGLTTAELLSMGTPMLIFNAIPGQESRNTDWLLAEGAAVKLQDLFMLPYVLEEVL-KPENLSRLKENAARLGYADAAFDVAGMVL 750
            + TDFDTH  W++  C         F+A E+G+  +     P +   + GIPI P F  +   ++RA  + N+ L GD        RP V+Q++ G     V  +  ALLS   P  VVVVCG+ A +   L +V   A  PH + VVGFT  +  + AAAD+V+SKPGGLTT+E+L+ G  M I N IPGQE RN+D+LL  GAA+K+  L  L   L  +L  P+ L+ LK NA RLG   AAF+VA  VL
Sbjct:  140 VTTDFDTHRLWVNQPC------DHYFTATEEGKAYLASWGVPSSDIAVTGIPIHPVFSRL---KDRATCIENQGLAGD--------RPIVLQLAGGFGVGPVRKILDALLSLDIPVEVVVVCGKNAELKKDLEKVRPAA--PHRLKVVGFTDRMDEWLAAADVVLSKPGGLTTSEVLACGAAMAILNPIPGQEFRNSDFLLENGAAIKINSLATLRLKLGALLGDPQRLATLKANARRLGRPQAAFEVAKFVL 373          
BLAST of mRNA_S-firma_F_contig10342.487.1 vs. uniprot
Match: A0A2V9IEX0_9BACT (UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9IEX0_9BACT)

HSP 1 Score: 149 bits (377), Expect = 2.260e-39
Identity = 97/247 (39.27%), Postives = 141/247 (57.09%), Query Frame = 1
Query:   19 TDFDTHATWMSSKCPSTVLFPRAFSA-EQGRLLMRK-DAPQTLSVLRGIPIVPSFREVPPPQERAQALNKA-LKGDGQPGLKPGRPTVVQMSSG---DDVVDVFTALLSATTPCNVVVVCGRQANVTAKLRRVADEAESPHCVSVVGFTKLIHLFFAAADLVISKPGGLTTAELLSMGTPMLIFNAIPGQESRNTDWLLAEGAAVKLQDLFMLPYVLEEVL-KPENLSRLKENAARLGYADAAFDVA 738
            TDF+TH  W++  C       R F+A ++G + ++    P T + + GIPI P F     P +RA  L +  L GD        RP ++Q++ G     +  ++ A+L+   P  +VVV GR      +L +V  E  S H    +GFT  +    A AD+V+SKPGGLTT+E L+ G  M I N  PGQESRN+D+LL  GAA+KL ++  LP+ L ++L +PE L++LK N+ RLG   AAF+VA
Sbjct:  141 TDFETHRLWVNQPC------DRYFTATDEGAVYLQHWGVPATATTVSGIPIHPVFSR---PTDRAACLERQRLTGD--------RPVLIQLAGGFGVGPIEAIYRAVLAIEVPLEIVVVAGRNEEARRELEQV--EVPSRHRAKTLGFTDQMDELMAVADIVLSKPGGLTTSEALARGAAMAIVNPTPGQESRNSDFLLENGAAIKLSNIATLPHKLTQLLGEPERLAQLKANSRRLGKPQAAFEVA 368          
BLAST of mRNA_S-firma_F_contig10342.487.1 vs. uniprot
Match: A0A7C4LZG5_9DELT (Glycosyltransferase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7C4LZG5_9DELT)

HSP 1 Score: 147 bits (371), Expect = 2.610e-38
Identity = 104/262 (39.69%), Postives = 138/262 (52.67%), Query Frame = 1
Query:    1 PPPAIVTDFDTHATWMSSKCPSTVL-------FPRAFSAEQGRLLMRKDAPQTLSVLRGIPIVPSFREVPPPQERAQALNKALKGDGQPGLKPGRPTVVQMSSG---DDVVDVFTALLSATTPCNVVVVCGRQANVTAKLRRVADEAESPHCVSVVGFTKLIHLFFAAADLVISKPGGLTTAELLSMGTPMLIFNAIPGQESRNTDWLLAEGAAVKLQDLFMLPYVLEEVLK-PENLSRLKENAARLGYADAAFDVAGMVLA 753
            P   +VTDF  H  W+   C    L       + RA      R+            + GIPI P+F     P  R   L +AL      G +  RP V+ +S G     V  +  ++L+ + P   VVVCGR A +  +L  +A    SPH + V+G+T  +  + A ADLVISKPGGLT++E+L+ GTP  I N IPGQESRN D+LL  GAAVK+  L  L + +E +L  P  LSRLK  A RL   +AAFD+A  VLA
Sbjct:  139 PQMTVVTDFMAHRLWVQEPCEHYFLATSECAAYVRALGVSAERI-----------AVTGIPIHPAFGR---PVRRGPCL-QAL------GCRGERPIVLLLSGGFGVGPVESILASVLAISRPIEAVVVCGRNARLERRLAALAPP--SPHRLRVLGYTSELDRWLAVADLVISKPGGLTSSEILARGTPFAIVNPIPGQESRNADYLLENGAAVKIGPLATLTWKIERLLADPPRLSRLKRQAKRLARPEAAFDIARRVLA 377          
BLAST of mRNA_S-firma_F_contig10342.487.1 vs. uniprot
Match: A0A2V8G473_9BACT (UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8G473_9BACT)

HSP 1 Score: 145 bits (367), Expect = 7.320e-38
Identity = 102/257 (39.69%), Postives = 135/257 (52.53%), Query Frame = 1
Query:   19 TDFDTHATWMSSKCPSTVLFPRAFSAEQGRLLMRKDAPQTLSVLRGIPIVPSFREVPPPQERAQALNKALKGDGQPGLKPGRPTVVQMSSGDDVVDV---FTALLSATTPCNVVVVCGRQANVTAKLRRVADEAESPHCVSVVGFTKLIHLFFAAADLVISKPGGLTTAELLSMGTPMLIFNAIPGQESRNTDWLLAEGAAVKLQDLFMLPYVLEEVLK-PENLSRLKENAARLGYADAAFDVAGMVLAAA-AGAPP 774
            TDF+TH  WM+  C          + E    L      +T     GIPI P F       +R++AL K        GLK  RP V+Q+S G  V  +   +  +L    P +VVVV G+      +L R+  +    H   V+GFT  I      AD+V+SKPGGLTT+E+L+ G  M I N IPGQESRN+D+LL  GAA+K+ ++  LP  L  +L  P+ L  LK NA R+    AAFDVA + L AA A APP
Sbjct:  141 TDFETHRLWMNEPCDHYT----TATEEGASYLASFGVDRTKITATGIPIHPVFSRA---SDRSEALRKH-------GLKGDRPIVLQLSGGFGVGPIEKLYRGILQIERPIDVVVVAGKNDKARKQLERI--DVPRQHRSQVIGFTTEIDELMGVADVVVSKPGGLTTSEVLARGAAMAIVNPIPGQESRNSDYLLESGAAIKINNIVTLPMKLGALLSDPQKLDALKANARRIAKPHAAFDVARIALMAAPAIAPP 381          
BLAST of mRNA_S-firma_F_contig10342.487.1 vs. uniprot
Match: A0A7M2WWQ6_9BACT (Glycosyltransferase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7M2WWQ6_9BACT)

HSP 1 Score: 143 bits (361), Expect = 3.470e-37
Identity = 93/254 (36.61%), Postives = 139/254 (54.72%), Query Frame = 1
Query:    1 PPPAIVTDFDTHATWMSSKCPSTVLFPRAFSAEQGRLLMRKDAPQTLSVLRGIPIVPSFREVPPPQERAQALNKALKGDGQPGLKPGRPTVVQMSSG---DDVVDVFTALLSATTPCNVVVVCGRQANVTAKLRRVADEAESPHCVSVVGFTKLIHLFFAAADLVISKPGGLTTAELLSMGTPMLIFNAIPGQESRNTDWLLAEGAAVKLQDLFMLPYVLEEVLKP-ENLSRLKENAARLGYADAAFDVAGMVL 750
            P   + TDF+TH  W++  C    L+  A + E  + L     PQ    + GIPI P F +        ++  + LK  G  G    RP V+Q++ G     +  ++ A+LS  +P  +VVVCG+ A    +L  +       H V ++GFT  +    A AD+V+SKPGGLTT+E+L+ G  M I N IPGQESRN+D+LL  GAA+K+ ++  L Y L+ +L   + L+ ++ NA R+    AAFDVA + L
Sbjct:  119 PQMTVTTDFETHRLWVNQPCD---LYTTA-TEEGAQYLRHWGVPQDDLRVTGIPIHPVFADT-------KSRERCLKSQGLVG---DRPVVLQLAGGFGVGPIAKIYQAVLSMPSPVELVVVCGKNAGAKEELAAIG--VPKQHRVKLLGFTDQMDELMAVADVVLSKPGGLTTSEVLARGAAMAIINPIPGQESRNSDYLLENGAAIKINNIGTLAYKLQSLLADRKRLASIRANALRISRPRAAFDVAEIAL 356          
BLAST of mRNA_S-firma_F_contig10342.487.1 vs. uniprot
Match: A0A7Y5SNR6_9BACT (Glycosyltransferase n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5SNR6_9BACT)

HSP 1 Score: 142 bits (359), Expect = 1.020e-36
Identity = 94/246 (38.21%), Postives = 132/246 (53.66%), Query Frame = 1
Query:   13 IVTDFDTHATWMSSKCPSTVLFPRAFSAEQGRLLMRKDAPQTLSVLRGIPIVPSFREVPPPQERAQALNKALKGDGQPGLKPGRPTVVQMSSGDDVVDVFT---ALLSATTPCNVVVVCGRQANVTAKLRRVADEAESPHCVSVVGFTKLIHLFFAAADLVISKPGGLTTAELLSMGTPMLIFNAIPGQESRNTDWLLAEGAAVKLQDLFMLPYVLEEVLK-PENLSRLKENAARLGYADAAFDVA 738
            + TDF+TH  W++  C          +AE    L+    P     + GIPI P+F    P   RA+ L +        GL   RP V+Q++ G  V  V     ALL    P  + VV GR   + A+L  +  +    H + V+GFT+ +     AADLV++KPGGLTT+E L+ G  + I N IPGQESRN+D+LL  GAA+K+ +   L Y + ++L  P  L+ LK NA+RLG   AAFD+A
Sbjct:  139 VTTDFETHRLWVNQPCDHYF----TATAEGAANLVHWGVPAAEVTVAGIPIHPAFSATKP---RAECLARQ-------GLSDDRPIVLQLAGGFGVGPVEKLCHALLDVEIPLQLAVVTGRNEELKARLEHI--QPPERHRLKVLGFTREMDELMTAADLVVTKPGGLTTSEALACGAALAIVNPIPGQESRNSDFLLENGAAIKINNTATLSYKVAQLLHDPSRLAELKRNASRLGRPRAAFDIA 368          
BLAST of mRNA_S-firma_F_contig10342.487.1 vs. uniprot
Match: A0A848ZGM5_9DELT (UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A848ZGM5_9DELT)

HSP 1 Score: 142 bits (358), Expect = 1.460e-36
Identity = 94/247 (38.06%), Postives = 132/247 (53.44%), Query Frame = 1
Query:   13 IVTDFDTHATWMSSKCPSTVLFPRAFSAEQGRL-LMRKDAPQTLSVLRGIPIVPSFREVPPPQERAQALNKALKGDGQPGLKPGRPTVVQMSSG---DDVVDVFTALLSATTPCNVVVVCGRQANVTAKLRRVADEAESPHCVSVVGFTKLIHLFFAAADLVISKPGGLTTAELLSMGTPMLIFNAIPGQESRNTDWLLAEGAAVKLQDLFMLPYVLEEVL-KPENLSRLKENAARLGYADAAFDVA 738
            + TD++TH  W++  C          +A  G   +  +D   T     GIPI P+F E    Q RA  L          GL   R  V+Q++ G     +  ++  LL    P  +V V GR   +  +L ++  E    H   V+GFT+ IH     ADLV+SKPGGLTT+E+L+ G+ M I N +PGQE+RN+D+LL  GAA+K+ ++  LPY L  +L   E L +LK+NAARL    AAFDVA
Sbjct:  142 VTTDYETHRLWVTRPCEHYCTATEEGAAYLGHWGVNERDITVT-----GIPIHPAFSEH---QGRATCLQSQ-------GLVGDRTIVLQLAGGFGVGPIEKIYRGLLEIDVPLEIVSVAGRNEEIKRELEKI--EVPPQHRSKVIGFTEKIHELMVVADLVLSKPGGLTTSEVLASGSAMAIINPVPGQETRNSDFLLENGAAIKINNVATLPYKLTRLLGDKERLRQLKQNAARLARPQAAFDVA 371          
BLAST of mRNA_S-firma_F_contig10342.487.1 vs. uniprot
Match: A0A7C5W6U8_9BACT (Glycosyltransferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C5W6U8_9BACT)

HSP 1 Score: 141 bits (356), Expect = 3.270e-36
Identity = 104/259 (40.15%), Postives = 141/259 (54.44%), Query Frame = 1
Query:   13 IVTDFDTHATWMSSKCPSTVLFPRAFSAEQGRLLMRKDAPQTLSV-LRGIPIVPSFREVPPPQERAQALN-KALKGDGQPGLKPGRPTVVQMSSG---DDVVDVFTALLSATTPCNVVVVCGRQANVTAKLRRVADEAESPHCVSVVGFTKLIHLFFAAADLVISKPGGLTTAELLSMGTPMLIFNAIPGQESRNTDWLLAEGAAVKLQDLFMLPYVLEEVLKPEN-LSRLKENAARLGYADAAFDVAGMV--LAAAAG 765
            I TDFDTH  WM+  C            E+G L +R        +   G+PI P F +   P +RA  +  + + GD        RP V+Q++ G     V  +F ALLS  TP  +VVV GR  N  AK    A +    H V V+GFT  IH   AAAD+V+SKPGGLT +E+L+ G  + + N IPGQESRN+D+LL  GAAVK+ ++    + LE +++    L  ++ NA RLG   AAF+VA +   LAAA G
Sbjct:  140 ITTDFDTHRIWMAEPCEYYFT-----ENEEGALHLRCFGVSGERIKATGVPIHPVFSK---PLDRAACMAFQEIAGD--------RPVVLQLAGGFGLGPVEAMFNALLSIETPIELVVVAGR--NEKAKRSLEAVKPPHRHKVKVIGFTSRIHELMAAADIVVSKPGGLTVSEVLACGAALAVVNPIPGQESRNSDFLLENGAAVKINNVATAAHKLEALIRDRTRLENIRRNAKRLGRPMAAFEVARLAIDLAAACG 380          
BLAST of mRNA_S-firma_F_contig10342.487.1 vs. uniprot
Match: A0A354GPR6_9BACT (UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354GPR6_9BACT)

HSP 1 Score: 141 bits (356), Expect = 3.390e-36
Identity = 99/253 (39.13%), Postives = 132/253 (52.17%), Query Frame = 1
Query:    1 PPPAIVTDFDTHATWMSSKCPSTVLFPRAFSA--EQGRLLMRKDAPQTLSVLRGIPIVPSFREVPPPQERAQALNKALKGDGQPGLKPGRPTVVQMSSGDDVVD----VFTALLSATTPCNVVVVCGRQANVTAKLRRVADEAESPHCVSVVGFTKLIHLFFAAADLVISKPGGLTTAELLSMGTPMLIFNAIPGQESRNTDWLLAEGAAVKLQDLFMLPYVLEEVLK-PENLSRLKENAARLGYADAAFDVA 738
            P   + TDFDTH  W+   C         F+A  E  R L     P     + G+PI P FR    P+++A    K        GL   RP V+QM+ G  VV     ++ ALL    P  +VV  GR   + A+L R+       H   V+ FT  I  + AAADLV+SKPGGLT AE L+ G  +++   +PGQESRN D+LL  GAAVK+  L +L Y ++ +L  P  L+ L+ NA RL   +AAFDVA
Sbjct:  144 PQVTVTTDFDTHRMWVHPPC------EHYFTATEEGSRYLQYWGVPVADVSVTGVPIHPVFRR---PKDKAACAAKH-------GLATDRPIVLQMAGGFGVVGPIEKLYAALLQTERPIELVVAAGRNGAIQARLERIPTPPR--HRARVLPFTTEIDEYMAAADLVVSKPGGLTVAETLARGAVLVMVQPVPGQESRNCDYLLENGAAVKVSALPLLAYKVDSLLADPARLAGLRANAVRLARPNAAFDVA 378          
BLAST of mRNA_S-firma_F_contig10342.487.1 vs. uniprot
Match: F7NDX9_9FIRM (UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase n=1 Tax=Acetonema longum DSM 6540 TaxID=1009370 RepID=F7NDX9_9FIRM)

HSP 1 Score: 140 bits (354), Expect = 5.280e-36
Identity = 95/247 (38.46%), Postives = 134/247 (54.25%), Query Frame = 1
Query:   13 IVTDFDTHATWMSSKCPSTVLFPRAFSA-EQGRL-LMRKDAPQTLSVLRGIPIVPSFREVPPPQERAQALNKALKGDGQPGLKPGRPTVVQMSSG---DDVVDVFTALLSATTPCNVVVVCGRQANVTAKLRRVADEAESPHCVSVVGFTKLIHLFFAAADLVISKPGGLTTAELLSMGTPMLIFNAIPGQESRNTDWLLAEGAAVKLQDLFMLPYVLEEVLK-PENLSRLKENAARLGYADAAFDV 735
            + TDFDTH  W++  C       R F+A E+G++ L     P    +L GIPI P F +   P+ R     +        GL   RP V+Q++ G     +  ++ +LL+   P  V+VV GR   V  +L   A      H   + GFT  I    AAAD+++SKPGGLTTAE L+ G  M+I + IPGQESRN+D+LL  GAAVK+ +L  L Y +  +L  P  L ++++NA R+    AAFDV
Sbjct:  140 VTTDFDTHRLWVNQPC------ERYFTAAEEGKINLTAWGVPVGDIILTGIPIHPVFAQ---PKSRQDCCQRQ-------GLSGDRPLVLQLAGGFGVGSIERIYQSLLTVEQPLEVMVVAGRNVKVRQQLETRA--CPPRHRTHIFGFTDQIDELMAAADIIVSKPGGLTTAETLARGAAMVIVDPIPGQESRNSDFLLENGAAVKVNNLSTLAYKVSSLLADPGRLRQIQDNACRIARPRAAFDV 368          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10342.487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V3ACS9_9BACT3.900e-4141.90UDP-N-acetylglucosamine--LPS N-acetylglucosamine t... [more]
A0A2V9IEX0_9BACT2.260e-3939.27UDP-N-acetylglucosamine--LPS N-acetylglucosamine t... [more]
A0A7C4LZG5_9DELT2.610e-3839.69Glycosyltransferase n=1 Tax=Desulfobacteraceae bac... [more]
A0A2V8G473_9BACT7.320e-3839.69UDP-N-acetylglucosamine--LPS N-acetylglucosamine t... [more]
A0A7M2WWQ6_9BACT3.470e-3736.61Glycosyltransferase n=1 Tax=Phycisphaerales bacter... [more]
A0A7Y5SNR6_9BACT1.020e-3638.21Glycosyltransferase n=1 Tax=Pirellulales bacterium... [more]
A0A848ZGM5_9DELT1.460e-3638.06UDP-N-acetylglucosamine--LPS N-acetylglucosamine t... [more]
A0A7C5W6U8_9BACT3.270e-3640.15Glycosyltransferase n=1 Tax=Planctomycetes bacteri... [more]
A0A354GPR6_9BACT3.390e-3639.13UDP-N-acetylglucosamine--LPS N-acetylglucosamine t... [more]
F7NDX9_9FIRM5.280e-3638.46UDP-N-acetylglucosamine:LPS N-acetylglucosamine tr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10342contigS-firma_F_contig10342:88..927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog1009370.ALO_01205
Preferred nameypfP
PFAMsGlyco_tran_28_C,MGDG_synth
Max annot lvl1239|Firmicutes
KEGG rclassRC00005,RC00059
KEGG koko:K03429
KEGG ReactionR02689,R04377
KEGG Pathwayko00561,ko01100,map00561,map01100
Evalue8.65e-37
EggNOG OGsCOG0707@1|root,COG0707@2|Bacteria,1UQ6A@1239|Firmicutes,4H2TU@909932|Negativicutes
EC2.4.1.315
DescriptionMonogalactosyldiacylglycerol synthase, C-terminal domain protein
COG categoryM
CAZyGT28
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons2
Model size774
Cds size774
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.7440732-CDS-S-firma_F_contig10342:87..5461622815565.7440732-CDS-S-firma_F_contig10342:87..546Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10342 88..546 +
1696949420.1989872-CDS-S-firma_F_contig10342:87..5461696949420.1989872-CDS-S-firma_F_contig10342:87..546Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10342 88..546 +
1622815565.757802-CDS-S-firma_F_contig10342:612..9271622815565.757802-CDS-S-firma_F_contig10342:612..927Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10342 613..927 +
1696949420.21636-CDS-S-firma_F_contig10342:612..9271696949420.21636-CDS-S-firma_F_contig10342:612..927Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10342 613..927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10342.487.1prot_S-firma_F_contig10342.487.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10342 88..927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10342.487.1

>prot_S-firma_F_contig10342.487.1 ID=prot_S-firma_F_contig10342.487.1|Name=mRNA_S-firma_F_contig10342.487.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=258bp
PPPAIVTDFDTHATWMSSKCPSTVLFPRAFSAEQGRLLMRKDAPQTLSVL
RGIPIVPSFREVPPPQERAQALNKALKGDGQPGLKPGRPTVVQMSSGDDV
VDVFTALLSATTPCNVVVVCGRQANVTAKLRRVADEAESPHCVSVVGFTK
LIHLFFAAADLVISKPGGLTTAELLSMGTPMLIFNAIPGQESRNTDWLLA
EGAAVKLQDLFMLPYVLEEVLKPENLSRLKENAARLGYADAAFDVAGMVL
AAAAGAPP
back to top

mRNA from alignment at S-firma_F_contig10342:88..927+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10342.487.1 ID=mRNA_S-firma_F_contig10342.487.1|Name=mRNA_S-firma_F_contig10342.487.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=840bp|location=Sequence derived from alignment at S-firma_F_contig10342:88..927+ (Sphaerotrichia firma ET2_F female)
CCCCCCCCAGCCATTGTCACTGACTTTGATACGCACGCGACGTGGATGTC CTCCAAATGCCCAAGCACGGTGCTGTTTCCACGGGCGTTTTCCGCGGAGC AAGGCCGCCTGTTGATGCGGAAGGACGCCCCGCAGACGCTGTCCGTCCTC CGCGGCATTCCTATTGTTCCCAGCTTTCGGGAGGTTCCCCCACCCCAGGA GCGTGCACAGGCCCTGAACAAAGCGCTCAAGGGTGACGGCCAACCCGGCC TCAAACCAGGCCGCCCCACCGTTGTCCAAATGTCCTCAGGGGATGACGTC GTGGACGTCTTCACGGCCTTGCTGTCCGCAACCACGCCGTGCAACGTGGT TGTGGTGTGTGGTCGCCAAGCAAACGTCACCGCCAAGCTGCGGCGCGTTG CCGACGAGGCGGAATCGCCACACTGCGTCAGTGTGGTGGGCTTCACCAAG TTGATCCACGTGGGTTGGGGGACGCTTGCTCGAGGTGTGTGTGGTGCGCA CGTGTGCTTGACCCCCCTCTTCCAGCTGTTTTTTGCCGCCGCTGACCTCG TCATCAGCAAGCCCGGCGGCCTGACAACCGCGGAGCTGTTGTCCATGGGG ACCCCCATGCTGATTTTCAACGCCATCCCCGGGCAAGAGTCACGCAACAC GGACTGGCTACTGGCGGAGGGCGCCGCCGTCAAGCTGCAGGACCTTTTCA TGCTGCCGTACGTCCTGGAGGAAGTCCTCAAGCCGGAAAACCTGAGCCGC CTCAAGGAAAATGCGGCCCGCTTGGGGTACGCGGACGCGGCGTTCGATGT GGCGGGCATGGTGTTGGCGGCGGCTGCAGGCGCGCCTCCG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10342:88..927+

>mRNA_S-firma_F_contig10342.487.1 ID=mRNA_S-firma_F_contig10342.487.1|Name=mRNA_S-firma_F_contig10342.487.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1548bp|location=Sequence derived from alignment at S-firma_F_contig10342:88..927+ (Sphaerotrichia firma ET2_F female)
CCCCCCCCAGCCATTGTCACTGACTTTGATACGCACGCGACGTGGATGTC
CTCCAAATGCCCAAGCACGGTGCTGTTTCCACGGGCGTTTTCCGCGGAGC
AAGGCCGCCTGTTGATGCGGAAGGACGCCCCGCAGACGCTGTCCGTCCTC
CGCGGCATTCCTATTGTTCCCAGCTTTCGGGAGGTTCCCCCACCCCAGGA
GCGTGCACAGGCCCTGAACAAAGCGCTCAAGGGTGACGGCCAACCCGGCC
TCAAACCAGGCCGCCCCACCGTTGTCCAAATGTCCTCAGGGGATGACGTC
GTGGACGTCTTCACGGCCTTGCTGTCCGCAACCACGCCGTGCAACGTGGT
TGTGGTGTGTGGTCGCCAAGCAAACGTCACCGCCAAGCTGCGGCGCGTTG
CCGACGAGGCGGAATCGCCACACTGCGTCAGTGTGGTGGGCTTCACCAAG
TTGATCCACCCCCCCCCAGCCATTGTCACTGACTTTGATACGCACGCGAC
GTGGATGTCCTCCAAATGCCCAAGCACGGTGCTGTTTCCACGGGCGTTTT
CCGCGGAGCAAGGCCGCCTGTTGATGCGGAAGGACGCCCCGCAGACGCTG
TCCGTCCTCCGCGGCATTCCTATTGTTCCCAGCTTTCGGGAGGTTCCCCC
ACCCCAGGAGCGTGCACAGGCCCTGAACAAAGCGCTCAAGGGTGACGGCC
AACCCGGCCTCAAACCAGGCCGCCCCACCGTTGTCCAAATGTCCTCAGGG
GATGACGTCGTGGACGTCTTCACGGCCTTGCTGTCCGCAACCACGCCGTG
CAACGTGGTTGTGGTGTGTGGTCGCCAAGCAAACGTCACCGCCAAGCTGC
GGCGCGTTGCCGACGAGGCGGAATCGCCACACTGCGTCAGTGTGGTGGGC
TTCACCAAGTTGATCCACCTGTTTTTTGCCGCCGCTGACCTCGTCATCAG
CAAGCCCGGCGGCCTGACAACCGCGGAGCTGTTGTCCATGGGGACCCCCA
TGCTGATTTTCAACGCCATCCCCGGGCAAGAGTCACGCAACACGGACTGG
CTACTGGCGGAGGGCGCCGCCGTCAAGCTGCAGGACCTTTTCATGCTGCC
GTACGTCCTGGAGGAAGTCCTCAAGCCGGAAAACCTGAGCCGCCTCAAGG
AAAATGCGGCCCGCTTGGGGTACGCGGACGCGGCGTTCGATGTGGCGGGC
ATGGTGTTGGCGGCGGCTGCAGGCGCGCCTCCGCTGTTTTTTGCCGCCGC
TGACCTCGTCATCAGCAAGCCCGGCGGCCTGACAACCGCGGAGCTGTTGT
CCATGGGGACCCCCATGCTGATTTTCAACGCCATCCCCGGGCAAGAGTCA
CGCAACACGGACTGGCTACTGGCGGAGGGCGCCGCCGTCAAGCTGCAGGA
CCTTTTCATGCTGCCGTACGTCCTGGAGGAAGTCCTCAAGCCGGAAAACC
TGAGCCGCCTCAAGGAAAATGCGGCCCGCTTGGGGTACGCGGACGCGGCG
TTCGATGTGGCGGGCATGGTGTTGGCGGCGGCTGCAGGCGCGCCTCCG
back to top