mRNA_S-firma_F_contig10289.424.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10289.424.1
Unique NamemRNA_S-firma_F_contig10289.424.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10289.424.1 vs. uniprot
Match: A0A7S3F7U8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F7U8_9VIRI)

HSP 1 Score: 52.8 bits (125), Expect = 1.900e-6
Identity = 28/70 (40.00%), Postives = 34/70 (48.57%), Query Frame = 1 
Query:  136 RLCVVCRARPREAVLLPCQHLALCEVCAQSWGKAGPANEEDAKAAGSGAGANLRPPCPQCSADVTDVLTV 345
            R+CV+C+   R  ++ PC H ALCEVCAQSW                      R PCP C +DVT V  V
Sbjct:   61 RICVICQDARRTHIIFPCNHYALCEVCAQSWQTG-------------------RLPCPICRSDVTAVKRV 111
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10289.424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3F7U8_9VIRI1.900e-640.00Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10289contigS-firma_F_contig10289:4705..5061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog36331.EPrPI00000020085
PFAMszf-C3HC4_3
Max annot lvl121069|Pythiales
Evalue5.8e-05
EggNOG OGs2CWN7@1|root,2RUVN@2759|Eukaryota,1MGTN@121069|Pythiales
DescriptionSource PGD
COG categoryS
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size336
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.082238-UTR-S-firma_F_contig10289:4704..47251622815559.082238-UTR-S-firma_F_contig10289:4704..4725Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10289 4705..4725 +
1696949415.1247108-UTR-S-firma_F_contig10289:4704..47251696949415.1247108-UTR-S-firma_F_contig10289:4704..4725Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10289 4705..4725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.0945647-CDS-S-firma_F_contig10289:4725..50611622815559.0945647-CDS-S-firma_F_contig10289:4725..5061Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10289 4726..5061 +
1696949415.1450064-CDS-S-firma_F_contig10289:4725..50611696949415.1450064-CDS-S-firma_F_contig10289:4725..5061Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10289 4726..5061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10289.424.1prot_S-firma_F_contig10289.424.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10289 4726..5061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10289.424.1

>prot_S-firma_F_contig10289.424.1 ID=prot_S-firma_F_contig10289.424.1|Name=mRNA_S-firma_F_contig10289.424.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=112bp
MPIPALCRLQHTLQQALTRVRDTMDKRWTQVLARSEVARLCVVCRARPRE
AVLLPCQHLALCEVCAQSWGKAGPANEEDAKAAGSGAGANLRPPCPQCSA
DVTDVLTVHFE*
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mRNA from alignment at S-firma_F_contig10289:4705..5061+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10289.424.1 ID=mRNA_S-firma_F_contig10289.424.1|Name=mRNA_S-firma_F_contig10289.424.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=357bp|location=Sequence derived from alignment at S-firma_F_contig10289:4705..5061+ (Sphaerotrichia firma ET2_F female)
GACGCCCAAGTCATCCAGACAATGCCCATTCCGGCGCTTTGCCGGTTGCA
GCACACCCTGCAGCAAGCCCTGACTAGAGTGCGGGACACCATGGACAAGC
GCTGGACGCAGGTACTGGCGAGGTCCGAAGTCGCCCGGCTGTGCGTCGTG
TGCCGGGCACGCCCCCGCGAGGCCGTCCTGCTGCCCTGCCAGCACCTCGC
CCTGTGCGAAGTCTGCGCTCAGTCATGGGGGAAGGCGGGGCCGGCGAACG
AGGAAGACGCAAAGGCTGCTGGCAGCGGGGCAGGCGCCAACCTGCGCCCG
CCTTGTCCGCAGTGCAGCGCGGATGTGACGGACGTCCTCACCGTACACTT
TGAGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10289:4705..5061+

>mRNA_S-firma_F_contig10289.424.1 ID=mRNA_S-firma_F_contig10289.424.1|Name=mRNA_S-firma_F_contig10289.424.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=672bp|location=Sequence derived from alignment at S-firma_F_contig10289:4705..5061+ (Sphaerotrichia firma ET2_F female)
ATGCCCATTCCGGCGCTTTGCCGGTTGCAGCACACCCTGCAGCAAGCCCT
GACTAGAGTGCGGGACACCATGGACAAGCGCTGGACGCAGGTACTGGCGA
GGTCCGAAGTCGCCCGGCTGTGCGTCGTGTGCCGGGCACGCCCCCGCGAG
GCCGTCCTGCTGCCCTGCCAGCACCTCGCCCTGTGCGAAGTCTGCGCTCA
GTCATGGGGGAAGGCGGGGCCGGCGAACGAGGAAGACGCAAAGGCTGCTG
GCAGCGGGGCAGGCGCCAACCTGCGCCCGCCTTGTCCGCAGTGCAGCGCG
GATGTGACGGACGTCCTCACCGTACACTTTGAGTAGATGCCCATTCCGGC
GCTTTGCCGGTTGCAGCACACCCTGCAGCAAGCCCTGACTAGAGTGCGGG
ACACCATGGACAAGCGCTGGACGCAGGTACTGGCGAGGTCCGAAGTCGCC
CGGCTGTGCGTCGTGTGCCGGGCACGCCCCCGCGAGGCCGTCCTGCTGCC
CTGCCAGCACCTCGCCCTGTGCGAAGTCTGCGCTCAGTCATGGGGGAAGG
CGGGGCCGGCGAACGAGGAAGACGCAAAGGCTGCTGGCAGCGGGGCAGGC
GCCAACCTGCGCCCGCCTTGTCCGCAGTGCAGCGCGGATGTGACGGACGT
CCTCACCGTACACTTTGAGTAG
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