prot_S-firma_F_contig10289.424.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10289.424.1
Unique Nameprot_S-firma_F_contig10289.424.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length112
Homology
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BLAST of mRNA_S-firma_F_contig10289.424.1 vs. uniprot
Match: A0A7S3F7U8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F7U8_9VIRI)

HSP 1 Score: 52.8 bits (125), Expect = 1.550e-6
Identity = 28/70 (40.00%), Postives = 34/70 (48.57%), Query Frame = 0 
Query:   39 RLCVVCRARPREAVLLPCQHLALCEVCAQSWGKAGPANEEDAKAAGSGAGANLRPPCPQCSADVTDVLTV 108
            R+CV+C+   R  ++ PC H ALCEVCAQSW                      R PCP C +DVT V  V
Sbjct:   61 RICVICQDARRTHIIFPCNHYALCEVCAQSWQTG-------------------RLPCPICRSDVTAVKRV 111
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10289.424.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3F7U8_9VIRI1.550e-640.00Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 41..98
e-value: 1.7E-5
score: 34.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 41..99
score: 9.657
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 16..110
e-value: 2.5E-14
score: 54.5
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 39..70
e-value: 6.3E-11
score: 42.0
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 39..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10289contigS-firma_F_contig10289:4726..5061 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10289.424.1mRNA_S-firma_F_contig10289.424.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10289 4705..5061 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10289.424.1 ID=prot_S-firma_F_contig10289.424.1|Name=mRNA_S-firma_F_contig10289.424.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=112bp
MPIPALCRLQHTLQQALTRVRDTMDKRWTQVLARSEVARLCVVCRARPRE
AVLLPCQHLALCEVCAQSWGKAGPANEEDAKAAGSGAGANLRPPCPQCSA
DVTDVLTVHFE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING