mRNA_S-firma_F_contig10274.410.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A7J7PXY5_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PXY5_9CHLO) HSP 1 Score: 81.3 bits (199), Expect = 1.670e-15 Identity = 50/104 (48.08%), Postives = 70/104 (67.31%), Query Frame = 1
Query: 1 FVAVFLSQESRDALLEAVPPVHRTVVADHVTLALRP-SEQELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGVLSTSS-TPYVTVSLAAGRKAVESNGVL 306
+VAVFL+QESRD LL VPP+HR V ADH+TLA +P + Q+L L +G V L ++ AAD QAVA + P + T+S + +VT+S+A G KAVE+ ++
Sbjct: 287 YVAVFLTQESRDVLLAMVPPLHRLVTADHMTLAYKPLTVQQL--LTFPLGASVQLSIIGAAADSRAQAVAADPPSWLPPTASASTHVTISVALGAKAVEAGHLI 388
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A383VR36_TETOB (Smr domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VR36_TETOB) HSP 1 Score: 79.7 bits (195), Expect = 5.910e-15 Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 1
Query: 1 FVAVFLSQESRDALLEAVPPVHRTVVADHVTLALRP-SEQELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGVLSTSSTP-YVTVSLAAGRKAVESNGVL 306
+VAVFL+QESRD LL VPP+H V ADH+TLA +P + Q+L L +G V L + AD QAVA E PP +L T S ++T+S+A G KA E+ GVL
Sbjct: 263 YVAVFLTQESRDVLLSMVPPLHPLVSADHMTLAYKPLNVQQL--LSFPLGASVQLSITGSTADSRAQAVAAEPPPWLLPTPSVAAHITISVALGAKAAEA-GVL 363
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A2P6TV45_CHLSO (Beta-ketoacyl-[acyl-carrier-protein] synthase III n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TV45_CHLSO) HSP 1 Score: 71.2 bits (173), Expect = 5.470e-12 Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 7 AVFLSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGV-LSTSSTPYVTVSLAAGRKAVESNGVLDSGWTALP---TPV 339
+VFL+ SR+ LL+ V P+H T+ ADH+T+A +P+ Q+ GL +GR AL +V +AAD QAVAVE P V + S P+VT+S+ A E G L + A P TPV
Sbjct: 50 SVFLTDRSREQLLQHVAPLHETISADHMTMAYKPTLQQCRGLP--LGREAALFIVGVAADYRAQAVAVEHPSWVPFLSESAPHVTISVGEEVPAKE-GGDLTAAALANPGLITPV 161
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: E1ZFB1_CHLVA (Smr domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZFB1_CHLVA) HSP 1 Score: 68.6 bits (166), Expect = 4.730e-11 Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 1 FVAVFLSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGVLSTSSTP-YVTVSL 267
+ AVFL+ +SR LL+ VPP+H V ADH+T+A +PS E L +GR AL V AAD QAVAVE P + S TP +VTVS+
Sbjct: 240 YAAVFLTDKSRQQLLQHVPPLHEVVTADHMTVAYQPSLDECLALP--LGREAALFVAGAAADYRAQAVAVEHPSWLPFLSGTPPHVTVSV 327
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A7S4QL71_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QL71_9DINO) HSP 1 Score: 60.8 bits (146), Expect = 2.300e-8 Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 1
Query: 1 FVAVFLSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGVLSTSSTPYVTVSLAAGRKAVESNGVLDSGWTALPTPVQLTG 351
+ +FL+ ESR LL VPP VVADH+TLA +PS GL ++G V L+V DD +QAV+VE + +VT+S +AVE+N D +T L P L G
Sbjct: 83 YTGIFLTAESRQKLLRRVPPRFAQVVADHMTLAWKPSSAR--GL--AVGSSVKLRVSGSGQDDRIQAVSVETAE---RQPRSGHVTISRRPEAEAVEAN---DLAFTPLGEPFALDG 189
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A429VA95_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonas ginkgonis TaxID=2315330 RepID=A0A429VA95_9SPHN) HSP 1 Score: 56.6 bits (135), Expect = 7.700e-8 Identity = 47/115 (40.87%), Postives = 60/115 (52.17%), Query Frame = 1
Query: 16 LSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASI------GRRVALKVVSIAADDGVQAVAVELPPGVLSTSSTPYVTVSLAAGRKAVESNGVLDS-GWTALPTPV 339
L + R +LLE PP + VVADHVTLA++P + A ++A I G V VV+I DG + P G ST ++T SL GR A ESN VL + GW L PV
Sbjct: 12 LDRAERASLLERFPPAYAEVVADHVTLAVKPGAERPAPVRAVIVGRADDGDGVECYVVTI---DGTA----DRPDG-----STYHITWSLGPGRTARESNDVLKAQGWQELDHPV 114
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: T0H295_9SPHN (Uncharacterized protein n=2 Tax=Sphingobium TaxID=165695 RepID=T0H295_9SPHN) HSP 1 Score: 54.7 bits (130), Expect = 4.240e-7 Identity = 48/119 (40.34%), Postives = 64/119 (53.78%), Query Frame = 1
Query: 16 LSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASIGRRVALKVVSIAADDGVQAVAVEL------PPGVLSTSSTPYVTVSL--AAGRKAVESNGVL-DSGWTALPTPVQL 345
L E R LLE PP+ ++ADHVTL + SEQ+ ++S A V SI+ G+QA+ V + P G ST ++T SL + GR AVESN V+ D GW AL PV +
Sbjct: 8 LDAEERKVLLERFPPLWPHIIADHVTLDAKASEQDPLPDESS-----AHIVGSISDGAGLQALIVAIGGTTGRPDG-----STYHITWSLDRSRGRAAVESNDVIADRGWNALDDPVPI 116
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A328AR99_9CAUL (Uncharacterized protein n=1 Tax=Phenylobacterium deserti TaxID=1914756 RepID=A0A328AR99_9CAUL) HSP 1 Score: 52.0 bits (123), Expect = 4.960e-6 Identity = 50/126 (39.68%), Postives = 63/126 (50.00%), Query Frame = 1
Query: 1 FVAVFLSQESRDALLEAVPPVHRTVVADHVTL------ALRPSEQ--ELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGVLSTSSTPYVTVSLAAGRKAVESNGVL-DSGWT--ALPTPVQL 345
+V + + RDALL+ P + VVA HVTL A P+E E+ G +A GR V VV I E P G ST ++T SLAAGR+A ESN V+ + GW A P PV L
Sbjct: 8 YVGWLVDPDQRDALLQRFAPRYPEVVAHHVTLKFGDRKAREPTETTGEIMG-EADDGRGVQALVVRIGGTT-------ERPDG-----STYHITWSLAAGRRAKESNDVIREGGWRPFAEPVPVSL 120
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A8J9WJ38_9CHLO (Probable NEDD4-binding protein 2 at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WJ38_9CHLO) HSP 1 Score: 53.9 bits (128), Expect = 6.320e-6 Identity = 33/104 (31.73%), Postives = 56/104 (53.85%), Query Frame = 1
Query: 1 FVAVFLSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGVLS--TSSTPYVTVSLAAGRKAVESNGVL 306
+ +F+ E + L + V H V ADH+TLA +PS+ +G+ ++ + + AD+ Q + V+LP + + P+VTVS AAG +AVE+ +L
Sbjct: 171 YTGLFIDGEEQQKLFDRVYACHVNVTADHITLAHKPSQ---VAPTLPLGKGFSITIAGVVADERTQVMPVQLPSELSEHFAGTIPHVTVSYAAGVRAVEAGHLL 271
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A3R6YX74_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YX74_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 3.100e-5 Identity = 39/113 (34.51%), Postives = 56/113 (49.56%), Query Frame = 1
Query: 7 AVFLSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGVLSTSSTP----YVTVSLAAGRKAVESNGVL-DSGWTALP 330
A++ S E+R LLE PP H V+A+H+TLA RPS + + L +G+ V L+VV D V +E + S + T+S A A SN +L D T +P
Sbjct: 45 AIYFSNETRQVLLERFPPKHAHVIAEHMTLAFRPSREFVESLP--LGQHVHLRVVEERYDAKGHCVKLEWVDNAVPVDSIGQRILHATMSFAPDSAAYYSNALLLDESATIVP 155 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10274.410.1 >prot_S-firma_F_contig10274.410.1 ID=prot_S-firma_F_contig10274.410.1|Name=mRNA_S-firma_F_contig10274.410.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=119bp FVAVFLSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASIGRback to top mRNA from alignment at S-firma_F_contig10274:3481..3837- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10274.410.1 ID=mRNA_S-firma_F_contig10274.410.1|Name=mRNA_S-firma_F_contig10274.410.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=357bp|location=Sequence derived from alignment at S-firma_F_contig10274:3481..3837- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10274:3481..3837- >mRNA_S-firma_F_contig10274.410.1 ID=mRNA_S-firma_F_contig10274.410.1|Name=mRNA_S-firma_F_contig10274.410.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=714bp|location=Sequence derived from alignment at S-firma_F_contig10274:3481..3837- (Sphaerotrichia firma ET2_F female)back to top |