mRNA_S-firma_F_contig10274.410.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10274.410.1
Unique NamemRNA_S-firma_F_contig10274.410.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A7J7PXY5_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PXY5_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 1.670e-15
Identity = 50/104 (48.08%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 FVAVFLSQESRDALLEAVPPVHRTVVADHVTLALRP-SEQELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGVLSTSS-TPYVTVSLAAGRKAVESNGVL 306
            +VAVFL+QESRD LL  VPP+HR V ADH+TLA +P + Q+L  L   +G  V L ++  AAD   QAVA + P  +  T+S + +VT+S+A G KAVE+  ++
Sbjct:  287 YVAVFLTQESRDVLLAMVPPLHRLVTADHMTLAYKPLTVQQL--LTFPLGASVQLSIIGAAADSRAQAVAADPPSWLPPTASASTHVTISVALGAKAVEAGHLI 388          
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A383VR36_TETOB (Smr domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VR36_TETOB)

HSP 1 Score: 79.7 bits (195), Expect = 5.910e-15
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 FVAVFLSQESRDALLEAVPPVHRTVVADHVTLALRP-SEQELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGVLSTSSTP-YVTVSLAAGRKAVESNGVL 306
            +VAVFL+QESRD LL  VPP+H  V ADH+TLA +P + Q+L  L   +G  V L +    AD   QAVA E PP +L T S   ++T+S+A G KA E+ GVL
Sbjct:  263 YVAVFLTQESRDVLLSMVPPLHPLVSADHMTLAYKPLNVQQL--LSFPLGASVQLSITGSTADSRAQAVAAEPPPWLLPTPSVAAHITISVALGAKAAEA-GVL 363          
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A2P6TV45_CHLSO (Beta-ketoacyl-[acyl-carrier-protein] synthase III n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TV45_CHLSO)

HSP 1 Score: 71.2 bits (173), Expect = 5.470e-12
Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    7 AVFLSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGV-LSTSSTPYVTVSLAAGRKAVESNGVLDSGWTALP---TPV 339
            +VFL+  SR+ LL+ V P+H T+ ADH+T+A +P+ Q+  GL   +GR  AL +V +AAD   QAVAVE P  V   + S P+VT+S+     A E  G L +   A P   TPV
Sbjct:   50 SVFLTDRSREQLLQHVAPLHETISADHMTMAYKPTLQQCRGLP--LGREAALFIVGVAADYRAQAVAVEHPSWVPFLSESAPHVTISVGEEVPAKE-GGDLTAAALANPGLITPV 161          
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: E1ZFB1_CHLVA (Smr domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZFB1_CHLVA)

HSP 1 Score: 68.6 bits (166), Expect = 4.730e-11
Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 FVAVFLSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGVLSTSSTP-YVTVSL 267
            + AVFL+ +SR  LL+ VPP+H  V ADH+T+A +PS  E   L   +GR  AL V   AAD   QAVAVE P  +   S TP +VTVS+
Sbjct:  240 YAAVFLTDKSRQQLLQHVPPLHEVVTADHMTVAYQPSLDECLALP--LGREAALFVAGAAADYRAQAVAVEHPSWLPFLSGTPPHVTVSV 327          
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A7S4QL71_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QL71_9DINO)

HSP 1 Score: 60.8 bits (146), Expect = 2.300e-8
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 1
Query:    1 FVAVFLSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGVLSTSSTPYVTVSLAAGRKAVESNGVLDSGWTALPTPVQLTG 351
            +  +FL+ ESR  LL  VPP    VVADH+TLA +PS     GL  ++G  V L+V     DD +QAV+VE          + +VT+S     +AVE+N   D  +T L  P  L G
Sbjct:   83 YTGIFLTAESRQKLLRRVPPRFAQVVADHMTLAWKPSSAR--GL--AVGSSVKLRVSGSGQDDRIQAVSVETAE---RQPRSGHVTISRRPEAEAVEAN---DLAFTPLGEPFALDG 189          
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A429VA95_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonas ginkgonis TaxID=2315330 RepID=A0A429VA95_9SPHN)

HSP 1 Score: 56.6 bits (135), Expect = 7.700e-8
Identity = 47/115 (40.87%), Postives = 60/115 (52.17%), Query Frame = 1
Query:   16 LSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASI------GRRVALKVVSIAADDGVQAVAVELPPGVLSTSSTPYVTVSLAAGRKAVESNGVLDS-GWTALPTPV 339
            L +  R +LLE  PP +  VVADHVTLA++P  +  A ++A I      G  V   VV+I   DG      + P G     ST ++T SL  GR A ESN VL + GW  L  PV
Sbjct:   12 LDRAERASLLERFPPAYAEVVADHVTLAVKPGAERPAPVRAVIVGRADDGDGVECYVVTI---DGTA----DRPDG-----STYHITWSLGPGRTARESNDVLKAQGWQELDHPV 114          
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: T0H295_9SPHN (Uncharacterized protein n=2 Tax=Sphingobium TaxID=165695 RepID=T0H295_9SPHN)

HSP 1 Score: 54.7 bits (130), Expect = 4.240e-7
Identity = 48/119 (40.34%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   16 LSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASIGRRVALKVVSIAADDGVQAVAVEL------PPGVLSTSSTPYVTVSL--AAGRKAVESNGVL-DSGWTALPTPVQL 345
            L  E R  LLE  PP+   ++ADHVTL  + SEQ+    ++S     A  V SI+   G+QA+ V +      P G     ST ++T SL  + GR AVESN V+ D GW AL  PV +
Sbjct:    8 LDAEERKVLLERFPPLWPHIIADHVTLDAKASEQDPLPDESS-----AHIVGSISDGAGLQALIVAIGGTTGRPDG-----STYHITWSLDRSRGRAAVESNDVIADRGWNALDDPVPI 116          
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A328AR99_9CAUL (Uncharacterized protein n=1 Tax=Phenylobacterium deserti TaxID=1914756 RepID=A0A328AR99_9CAUL)

HSP 1 Score: 52.0 bits (123), Expect = 4.960e-6
Identity = 50/126 (39.68%), Postives = 63/126 (50.00%), Query Frame = 1
Query:    1 FVAVFLSQESRDALLEAVPPVHRTVVADHVTL------ALRPSEQ--ELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGVLSTSSTPYVTVSLAAGRKAVESNGVL-DSGWT--ALPTPVQL 345
            +V   +  + RDALL+   P +  VVA HVTL      A  P+E   E+ G +A  GR V   VV I           E P G     ST ++T SLAAGR+A ESN V+ + GW   A P PV L
Sbjct:    8 YVGWLVDPDQRDALLQRFAPRYPEVVAHHVTLKFGDRKAREPTETTGEIMG-EADDGRGVQALVVRIGGTT-------ERPDG-----STYHITWSLAAGRRAKESNDVIREGGWRPFAEPVPVSL 120          
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A8J9WJ38_9CHLO (Probable NEDD4-binding protein 2 at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WJ38_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 6.320e-6
Identity = 33/104 (31.73%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    1 FVAVFLSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGVLS--TSSTPYVTVSLAAGRKAVESNGVL 306
            +  +F+  E +  L + V   H  V ADH+TLA +PS+         +G+  ++ +  + AD+  Q + V+LP  +      + P+VTVS AAG +AVE+  +L
Sbjct:  171 YTGLFIDGEEQQKLFDRVYACHVNVTADHITLAHKPSQ---VAPTLPLGKGFSITIAGVVADERTQVMPVQLPSELSEHFAGTIPHVTVSYAAGVRAVEAGHLL 271          
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Match: A0A3R6YX74_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YX74_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.100e-5
Identity = 39/113 (34.51%), Postives = 56/113 (49.56%), Query Frame = 1
Query:    7 AVFLSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASIGRRVALKVVSIAADDGVQAVAVELPPGVLSTSSTP----YVTVSLAAGRKAVESNGVL-DSGWTALP 330
            A++ S E+R  LLE  PP H  V+A+H+TLA RPS + +  L   +G+ V L+VV    D     V +E     +   S      + T+S A    A  SN +L D   T +P
Sbjct:   45 AIYFSNETRQVLLERFPPKHAHVIAEHMTLAFRPSREFVESLP--LGQHVHLRVVEERYDAKGHCVKLEWVDNAVPVDSIGQRILHATMSFAPDSAAYYSNALLLDESATIVP 155          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10274.410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7J7PXY5_9CHLO1.670e-1548.08Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A383VR36_TETOB5.910e-1550.00Smr domain-containing protein n=1 Tax=Tetradesmus ... [more]
A0A2P6TV45_CHLSO5.470e-1243.48Beta-ketoacyl-[acyl-carrier-protein] synthase III ... [more]
E1ZFB1_CHLVA4.730e-1148.89Smr domain-containing protein n=1 Tax=Chlorella va... [more]
A0A7S4QL71_9DINO2.300e-839.32Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A429VA95_9SPHN7.700e-840.87Uncharacterized protein n=1 Tax=Sphingomonas ginkg... [more]
T0H295_9SPHN4.240e-740.34Uncharacterized protein n=2 Tax=Sphingobium TaxID=... [more]
A0A328AR99_9CAUL4.960e-639.68Uncharacterized protein n=1 Tax=Phenylobacterium d... [more]
A0A8J9WJ38_9CHLO6.320e-631.73Probable NEDD4-binding protein 2 at C-terminar hal... [more]
A0A3R6YX74_9STRA3.100e-534.51Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10274contigS-firma_F_contig10274:3481..3837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog554065.XP_005847570.1
PFAMsSmr
Max annot lvl2759|Eukaryota
Evalue7.76e-12
EggNOG OGsKOG2401@1|root,KOG2401@2759|Eukaryota
Description2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
COG categoryO
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.7680843-CDS-S-firma_F_contig10274:3480..38371622815557.7680843-CDS-S-firma_F_contig10274:3480..3837Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10274 3481..3837 -
1696949414.1824677-CDS-S-firma_F_contig10274:3480..38371696949414.1824677-CDS-S-firma_F_contig10274:3480..3837Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10274 3481..3837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10274.410.1prot_S-firma_F_contig10274.410.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10274 3481..3837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10274.410.1

>prot_S-firma_F_contig10274.410.1 ID=prot_S-firma_F_contig10274.410.1|Name=mRNA_S-firma_F_contig10274.410.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=119bp
FVAVFLSQESRDALLEAVPPVHRTVVADHVTLALRPSEQELAGLKASIGR
RVALKVVSIAADDGVQAVAVELPPGVLSTSSTPYVTVSLAAGRKAVESNG
VLDSGWTALPTPVQLTGSI
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mRNA from alignment at S-firma_F_contig10274:3481..3837-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10274.410.1 ID=mRNA_S-firma_F_contig10274.410.1|Name=mRNA_S-firma_F_contig10274.410.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=357bp|location=Sequence derived from alignment at S-firma_F_contig10274:3481..3837- (Sphaerotrichia firma ET2_F female)
TTCGTGGCCGTGTTTCTGTCTCAGGAGAGCCGAGACGCATTGCTGGAGGC TGTGCCCCCCGTGCACCGCACCGTGGTGGCCGACCACGTTACGCTGGCGC TTCGACCGTCGGAGCAGGAACTGGCGGGCTTGAAGGCCTCCATTGGGCGC CGGGTGGCACTCAAGGTTGTCAGCATTGCGGCGGACGACGGCGTGCAAGC CGTGGCCGTGGAGCTGCCACCTGGGGTTTTGTCCACGAGCTCCACGCCCT ACGTCACCGTGTCCCTTGCCGCCGGCCGGAAGGCCGTGGAATCTAATGGC GTGCTTGACAGCGGCTGGACGGCGCTACCCACCCCCGTGCAGCTCACGGG CAGCATT
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Coding sequence (CDS) from alignment at S-firma_F_contig10274:3481..3837-

>mRNA_S-firma_F_contig10274.410.1 ID=mRNA_S-firma_F_contig10274.410.1|Name=mRNA_S-firma_F_contig10274.410.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=714bp|location=Sequence derived from alignment at S-firma_F_contig10274:3481..3837- (Sphaerotrichia firma ET2_F female)
TTCGTGGCCGTGTTTCTGTCTCAGGAGAGCCGAGACGCATTGCTGGAGGC
TGTGCCCCCCGTGCACCGCACCGTGGTGGCCGACCACGTTACGCTGGCGC
TTCGACCGTCGGAGCAGGAACTGGCGGGCTTGAAGGCCTCCATTGGGCGC
CGGGTGGCACTCAAGGTTGTCAGCATTGCGGCGGACGACGGCGTGCAAGC
CGTGGCCGTGGAGCTGCCACCTGGGGTTTTGTCCACGAGCTCCACGCCCT
ACGTCACCGTGTCCCTTGCCGCCGGCCGGAAGGCCGTGGAATCTAATGGC
GTGCTTGACAGCGGCTGGACGGCGCTACCCACCCCCGTGCAGCTCACGGG
CAGCATTTTCGTGGCCGTGTTTCTGTCTCAGGAGAGCCGAGACGCATTGC
TGGAGGCTGTGCCCCCCGTGCACCGCACCGTGGTGGCCGACCACGTTACG
CTGGCGCTTCGACCGTCGGAGCAGGAACTGGCGGGCTTGAAGGCCTCCAT
TGGGCGCCGGGTGGCACTCAAGGTTGTCAGCATTGCGGCGGACGACGGCG
TGCAAGCCGTGGCCGTGGAGCTGCCACCTGGGGTTTTGTCCACGAGCTCC
ACGCCCTACGTCACCGTGTCCCTTGCCGCCGGCCGGAAGGCCGTGGAATC
TAATGGCGTGCTTGACAGCGGCTGGACGGCGCTACCCACCCCCGTGCAGC
TCACGGGCAGCATT
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