mRNA_S-firma_F_contig10273.408.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A2G0CGD7_9BACT (Uncharacterized protein n=1 Tax=Lewinella marina TaxID=438751 RepID=A0A2G0CGD7_9BACT) HSP 1 Score: 62.0 bits (149), Expect = 3.250e-9 Identity = 45/99 (45.45%), Postives = 51/99 (51.52%), Query Frame = 1
Query: 1 DTDEDGLCNVGDPDDDNDTVLDDNDLCFPT--RIGSDSGFFTEVDSSGCPKIVWDGDFDGACL-----------ETDNCPNVYNPSQTNADGDDYGDAC 258
DTD DGL + DPDDDND V D D C P R GS F+ ++D G GD A L TDNCP YNP+QT+ DGD GDAC
Sbjct: 2758 DTDNDGLGDACDPDDDNDGVPDTQD-CAPLDDRYGSPQVFYADLDGDGF------GDPSQATLACVPPQGYVKNRTDNCPATYNPAQTDTDGDGVGDAC 2849
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A536LMA8_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536LMA8_9CHLR) HSP 1 Score: 57.8 bits (138), Expect = 6.220e-8 Identity = 37/84 (44.05%), Postives = 44/84 (52.38%), Query Frame = 1
Query: 40 DDDNDTVLDDNDLCFPTRIGSDSGFFTEVDSSGCPKIVWDGDFDGAC---------LETDNCPNVYNPSQTNADGDDYGDACDL 264
DDD D VL+ D C T VDS+GC + DGD DG C +DNCP V NP+Q++ADGD GDACD
Sbjct: 102 DDDGDGVLNTADACPGTPSVE-----LPVDSNGCSRHQVDGDLDGVCDPGKTSTFCSGSDNCPAVANPTQSDADGDGVGDACDT 180
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A536LFS5_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536LFS5_9CHLR) HSP 1 Score: 57.8 bits (138), Expect = 9.610e-8 Identity = 37/84 (44.05%), Postives = 44/84 (52.38%), Query Frame = 1
Query: 40 DDDNDTVLDDNDLCFPTRIGSDSGFFTEVDSSGCPKIVWDGDFDGAC---------LETDNCPNVYNPSQTNADGDDYGDACDL 264
DDD D VL+ D C T VDS+GC + DGD DG C +DNCP V NP+Q++ADGD GDACD
Sbjct: 561 DDDGDGVLNTADACPGTPSVE-----LPVDSNGCSRHQVDGDLDGVCDPGKTSTFCSGSDNCPAVANPTQSDADGDGVGDACDT 639
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: UPI0013005852 (PKD domain-containing protein n=1 Tax=Lewinella sp. IMCC34183 TaxID=2248762 RepID=UPI0013005852) HSP 1 Score: 57.4 bits (137), Expect = 1.380e-7 Identity = 40/97 (41.24%), Postives = 50/97 (51.55%), Query Frame = 1
Query: 1 DTDEDGLCNVGDPDDDNDTVLDDNDLCFPTRIGSDSG--FFTEVDSSGCPKIVWDGDFDGACLE--------TDNCPNVYNPSQTNADGDDYGDACD 261
DTD DGL + DPDDDND VLD D C+P G F+ + D G +F AC++ TDNCP + NP Q++ D D GD CD
Sbjct: 3543 DTDGDGLGDACDPDDDNDGVLDGQD-CYPLDSTRSVGPTFYADRDGDGFGDP---NEFVSACIQPSGFVLNNTDNCPTIPNPDQSDVDNDGVGDVCD 3635
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A533RAF0_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A533RAF0_9DELT) HSP 1 Score: 56.6 bits (135), Expect = 2.560e-7 Identity = 42/103 (40.78%), Postives = 49/103 (47.57%), Query Frame = 1
Query: 13 DGLCNVGDPDDDNDTVLDDNDLCFPTRIGSDSGFFTEVDSSG-------CPKIVW-DGDFDGACLET----------DNCPNVYNPSQTNADGDDYGDACDLD 267
D + NV DPDDDNDT LD ND+ FP + + D+ G CP DGD DG C+ DNCP + N Q N D D GDACD D
Sbjct: 1974 DAMGNVCDPDDDNDTYLDGNDV-FPLNPAE----WADADADGTGNNSDVCPNDAQNDGDGDGVCVGAGFNAPKLAGNDNCPTLINADQANFDLDAMGDACDAD 2071
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A2G0CE42_9BACT (Uncharacterized protein n=1 Tax=Lewinella marina TaxID=438751 RepID=A0A2G0CE42_9BACT) HSP 1 Score: 56.2 bits (134), Expect = 3.510e-7 Identity = 41/94 (43.62%), Postives = 49/94 (52.13%), Query Frame = 1
Query: 1 DTDEDGLCNVGDPDDDNDTVLDDNDLCFPTRIGSDSG--FFTEVDSSGC----PKIVWDGDFDGACLE-TDNCPNVYNPSQTNADGDDYGDACD 261
DTD DGL + DPDDDND V D D C+P +G F+ + D G I G L TDNCP++ NP QT+AD D GD CD
Sbjct: 3542 DTDGDGLGDACDPDDDNDGVADGQD-CYPLDPSRSTGPTFYADRDGDGFGDPNESITACNQPAGFVLNNTDNCPSISNPDQTDADNDGIGDVCD 3634
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A1Z7YM93_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium 42_54_T18 TaxID=1856293 RepID=A0A1Z7YM93_9GAMM) HSP 1 Score: 55.5 bits (132), Expect = 6.530e-7 Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = 1
Query: 142 PKIVWDGDFDGACLETDNCPNVYNPSQTNADGDDYGDACDLD 267
P + +D D DG DNCP YNPSQ+N DGD+YGDACD D
Sbjct: 400 PTVQFDSDKDGIDNTADNCPVHYNPSQSNVDGDNYGDACDKD 441
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A2S6I7Q6_9BACT (Putative secreted protein (Por secretion system target) n=1 Tax=Lewinella xylanilytica TaxID=1514080 RepID=A0A2S6I7Q6_9BACT) HSP 1 Score: 52.8 bits (125), Expect = 5.840e-6 Identity = 40/98 (40.82%), Postives = 50/98 (51.02%), Query Frame = 1
Query: 1 DTDEDGLCNVGDPDDDNDTVLDDNDLCFPT--RIGSDSGFFTEVDSSGCPKIVWDGDFDGACL---------ETDNCPNVYNPSQTNADGDDYGDACD 261
DTD DGL N DPDDDND V D D C P ++G ++ + D+ G + D C TDNCP NPSQ ++DGD +GD CD
Sbjct: 2714 DTDNDGLGNSCDPDDDNDGVPDLED-CEPLNPQVGRARVYYADFDNDGFGDPM---DSLVTCALAPANYVIDNTDNCPYTANPSQIDSDGDGFGDVCD 2807
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A550J5A6_9DELT (Uncharacterized protein n=1 Tax=Desulfuromonas acetexigens TaxID=38815 RepID=A0A550J5A6_9DELT) HSP 1 Score: 52.4 bits (124), Expect = 6.870e-6 Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 1
Query: 157 DGDFDGACLETDNCPNVYNPSQTNADGDDYGDACDLD 267
DGD DG E DNCP+++NP QT+ D D GDACD D
Sbjct: 206 DGDGDGIATEADNCPDIFNPEQTDTDSDGLGDACDAD 242
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: UPI001EE87C2E (malectin domain-containing carbohydrate-binding protein n=1 Tax=Lewinella maritima TaxID=1383882 RepID=UPI001EE87C2E) HSP 1 Score: 52.0 bits (123), Expect = 1.090e-5 Identity = 39/99 (39.39%), Postives = 49/99 (49.49%), Query Frame = 1
Query: 1 DTDEDGLCNVGDPDDDNDTVLDDNDLCFP--TRIGSDSGFFTEVDSSG----------CPKIVWDGDFDGACLE-TDNCPNVYNPSQTNADGDDYGDAC 258
DTDEDGL + DPDDDND + D D C P IG + ++ + D G C + G L TDNCP NP Q ++DG+ GDAC
Sbjct: 3633 DTDEDGLGDACDPDDDNDGIADAED-CAPLDATIGRGTRYYRDQDDDGFGDPASSLRSCSAVA------GYVLNNTDNCPLTANPGQEDSDGNGIGDAC 3724 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10273.408.1 >prot_S-firma_F_contig10273.408.1 ID=prot_S-firma_F_contig10273.408.1|Name=mRNA_S-firma_F_contig10273.408.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=89bp DTDEDGLCNVGDPDDDNDTVLDDNDLCFPTRIGSDSGFFTEVDSSGCPKIback to top mRNA from alignment at S-firma_F_contig10273:4609..4995- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10273.408.1 ID=mRNA_S-firma_F_contig10273.408.1|Name=mRNA_S-firma_F_contig10273.408.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=387bp|location=Sequence derived from alignment at S-firma_F_contig10273:4609..4995- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10273:4609..4995- >mRNA_S-firma_F_contig10273.408.1 ID=mRNA_S-firma_F_contig10273.408.1|Name=mRNA_S-firma_F_contig10273.408.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=534bp|location=Sequence derived from alignment at S-firma_F_contig10273:4609..4995- (Sphaerotrichia firma ET2_F female)back to top |