mRNA_S-firma_F_contig10273.408.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10273.408.1
Unique NamemRNA_S-firma_F_contig10273.408.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A2G0CGD7_9BACT (Uncharacterized protein n=1 Tax=Lewinella marina TaxID=438751 RepID=A0A2G0CGD7_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 3.250e-9
Identity = 45/99 (45.45%), Postives = 51/99 (51.52%), Query Frame = 1
Query:    1 DTDEDGLCNVGDPDDDNDTVLDDNDLCFPT--RIGSDSGFFTEVDSSGCPKIVWDGDFDGACL-----------ETDNCPNVYNPSQTNADGDDYGDAC 258
            DTD DGL +  DPDDDND V D  D C P   R GS   F+ ++D  G       GD   A L            TDNCP  YNP+QT+ DGD  GDAC
Sbjct: 2758 DTDNDGLGDACDPDDDNDGVPDTQD-CAPLDDRYGSPQVFYADLDGDGF------GDPSQATLACVPPQGYVKNRTDNCPATYNPAQTDTDGDGVGDAC 2849          
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A536LMA8_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536LMA8_9CHLR)

HSP 1 Score: 57.8 bits (138), Expect = 6.220e-8
Identity = 37/84 (44.05%), Postives = 44/84 (52.38%), Query Frame = 1
Query:   40 DDDNDTVLDDNDLCFPTRIGSDSGFFTEVDSSGCPKIVWDGDFDGAC---------LETDNCPNVYNPSQTNADGDDYGDACDL 264
            DDD D VL+  D C  T           VDS+GC +   DGD DG C           +DNCP V NP+Q++ADGD  GDACD 
Sbjct:  102 DDDGDGVLNTADACPGTPSVE-----LPVDSNGCSRHQVDGDLDGVCDPGKTSTFCSGSDNCPAVANPTQSDADGDGVGDACDT 180          
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A536LFS5_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536LFS5_9CHLR)

HSP 1 Score: 57.8 bits (138), Expect = 9.610e-8
Identity = 37/84 (44.05%), Postives = 44/84 (52.38%), Query Frame = 1
Query:   40 DDDNDTVLDDNDLCFPTRIGSDSGFFTEVDSSGCPKIVWDGDFDGAC---------LETDNCPNVYNPSQTNADGDDYGDACDL 264
            DDD D VL+  D C  T           VDS+GC +   DGD DG C           +DNCP V NP+Q++ADGD  GDACD 
Sbjct:  561 DDDGDGVLNTADACPGTPSVE-----LPVDSNGCSRHQVDGDLDGVCDPGKTSTFCSGSDNCPAVANPTQSDADGDGVGDACDT 639          
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: UPI0013005852 (PKD domain-containing protein n=1 Tax=Lewinella sp. IMCC34183 TaxID=2248762 RepID=UPI0013005852)

HSP 1 Score: 57.4 bits (137), Expect = 1.380e-7
Identity = 40/97 (41.24%), Postives = 50/97 (51.55%), Query Frame = 1
Query:    1 DTDEDGLCNVGDPDDDNDTVLDDNDLCFPTRIGSDSG--FFTEVDSSGCPKIVWDGDFDGACLE--------TDNCPNVYNPSQTNADGDDYGDACD 261
            DTD DGL +  DPDDDND VLD  D C+P       G  F+ + D  G        +F  AC++        TDNCP + NP Q++ D D  GD CD
Sbjct: 3543 DTDGDGLGDACDPDDDNDGVLDGQD-CYPLDSTRSVGPTFYADRDGDGFGDP---NEFVSACIQPSGFVLNNTDNCPTIPNPDQSDVDNDGVGDVCD 3635          
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A533RAF0_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A533RAF0_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 2.560e-7
Identity = 42/103 (40.78%), Postives = 49/103 (47.57%), Query Frame = 1
Query:   13 DGLCNVGDPDDDNDTVLDDNDLCFPTRIGSDSGFFTEVDSSG-------CPKIVW-DGDFDGACLET----------DNCPNVYNPSQTNADGDDYGDACDLD 267
            D + NV DPDDDNDT LD ND+ FP         + + D+ G       CP     DGD DG C+            DNCP + N  Q N D D  GDACD D
Sbjct: 1974 DAMGNVCDPDDDNDTYLDGNDV-FPLNPAE----WADADADGTGNNSDVCPNDAQNDGDGDGVCVGAGFNAPKLAGNDNCPTLINADQANFDLDAMGDACDAD 2071          
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A2G0CE42_9BACT (Uncharacterized protein n=1 Tax=Lewinella marina TaxID=438751 RepID=A0A2G0CE42_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 3.510e-7
Identity = 41/94 (43.62%), Postives = 49/94 (52.13%), Query Frame = 1
Query:    1 DTDEDGLCNVGDPDDDNDTVLDDNDLCFPTRIGSDSG--FFTEVDSSGC----PKIVWDGDFDGACLE-TDNCPNVYNPSQTNADGDDYGDACD 261
            DTD DGL +  DPDDDND V D  D C+P      +G  F+ + D  G       I       G  L  TDNCP++ NP QT+AD D  GD CD
Sbjct: 3542 DTDGDGLGDACDPDDDNDGVADGQD-CYPLDPSRSTGPTFYADRDGDGFGDPNESITACNQPAGFVLNNTDNCPSISNPDQTDADNDGIGDVCD 3634          
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A1Z7YM93_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium 42_54_T18 TaxID=1856293 RepID=A0A1Z7YM93_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 6.530e-7
Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = 1
Query:  142 PKIVWDGDFDGACLETDNCPNVYNPSQTNADGDDYGDACDLD 267
            P + +D D DG     DNCP  YNPSQ+N DGD+YGDACD D
Sbjct:  400 PTVQFDSDKDGIDNTADNCPVHYNPSQSNVDGDNYGDACDKD 441          
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A2S6I7Q6_9BACT (Putative secreted protein (Por secretion system target) n=1 Tax=Lewinella xylanilytica TaxID=1514080 RepID=A0A2S6I7Q6_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 5.840e-6
Identity = 40/98 (40.82%), Postives = 50/98 (51.02%), Query Frame = 1
Query:    1 DTDEDGLCNVGDPDDDNDTVLDDNDLCFPT--RIGSDSGFFTEVDSSGCPKIVWDGDFDGACL---------ETDNCPNVYNPSQTNADGDDYGDACD 261
            DTD DGL N  DPDDDND V D  D C P   ++G    ++ + D+ G    +   D    C           TDNCP   NPSQ ++DGD +GD CD
Sbjct: 2714 DTDNDGLGNSCDPDDDNDGVPDLED-CEPLNPQVGRARVYYADFDNDGFGDPM---DSLVTCALAPANYVIDNTDNCPYTANPSQIDSDGDGFGDVCD 2807          
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: A0A550J5A6_9DELT (Uncharacterized protein n=1 Tax=Desulfuromonas acetexigens TaxID=38815 RepID=A0A550J5A6_9DELT)

HSP 1 Score: 52.4 bits (124), Expect = 6.870e-6
Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 1
Query:  157 DGDFDGACLETDNCPNVYNPSQTNADGDDYGDACDLD 267
            DGD DG   E DNCP+++NP QT+ D D  GDACD D
Sbjct:  206 DGDGDGIATEADNCPDIFNPEQTDTDSDGLGDACDAD 242          
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Match: UPI001EE87C2E (malectin domain-containing carbohydrate-binding protein n=1 Tax=Lewinella maritima TaxID=1383882 RepID=UPI001EE87C2E)

HSP 1 Score: 52.0 bits (123), Expect = 1.090e-5
Identity = 39/99 (39.39%), Postives = 49/99 (49.49%), Query Frame = 1
Query:    1 DTDEDGLCNVGDPDDDNDTVLDDNDLCFP--TRIGSDSGFFTEVDSSG----------CPKIVWDGDFDGACLE-TDNCPNVYNPSQTNADGDDYGDAC 258
            DTDEDGL +  DPDDDND + D  D C P    IG  + ++ + D  G          C  +       G  L  TDNCP   NP Q ++DG+  GDAC
Sbjct: 3633 DTDEDGLGDACDPDDDNDGIADAED-CAPLDATIGRGTRYYRDQDDDGFGDPASSLRSCSAVA------GYVLNNTDNCPLTANPGQEDSDGNGIGDAC 3724          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10273.408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A2G0CGD7_9BACT3.250e-945.45Uncharacterized protein n=1 Tax=Lewinella marina T... [more]
A0A536LMA8_9CHLR6.220e-844.05Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A536LFS5_9CHLR9.610e-844.05Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
UPI00130058521.380e-741.24PKD domain-containing protein n=1 Tax=Lewinella sp... [more]
A0A533RAF0_9DELT2.560e-740.78Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A2G0CE42_9BACT3.510e-743.62Uncharacterized protein n=1 Tax=Lewinella marina T... [more]
A0A1Z7YM93_9GAMM6.530e-759.52Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2S6I7Q6_9BACT5.840e-640.82Putative secreted protein (Por secretion system ta... [more]
A0A550J5A6_9DELT6.870e-659.46Uncharacterized protein n=1 Tax=Desulfuromonas ace... [more]
UPI001EE87C2E1.090e-539.39malectin domain-containing carbohydrate-binding pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10273contigS-firma_F_contig10273:4609..4995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog1177154.Y5S_02580
Preferred nametolB3
PFAMsPD40
Max annot lvl2|Bacteria
KEGG koko:K03641
KEGG TC2.C.1.2
Evalue5.24e-05
EggNOG OGsCOG0823@1|root,COG3391@1|root,COG0823@2|Bacteria,COG3391@2|Bacteria
Descriptionamine dehydrogenase activity
COG categoryCO
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.6769361-CDS-S-firma_F_contig10273:4608..46951622815557.6769361-CDS-S-firma_F_contig10273:4608..4695Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10273 4609..4695 -
1696949414.1291184-CDS-S-firma_F_contig10273:4608..46951696949414.1291184-CDS-S-firma_F_contig10273:4608..4695Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10273 4609..4695 -
1622815557.6912699-CDS-S-firma_F_contig10273:4815..49951622815557.6912699-CDS-S-firma_F_contig10273:4815..4995Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10273 4816..4995 -
1696949414.144696-CDS-S-firma_F_contig10273:4815..49951696949414.144696-CDS-S-firma_F_contig10273:4815..4995Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10273 4816..4995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10273.408.1prot_S-firma_F_contig10273.408.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10273 4609..4995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10273.408.1

>prot_S-firma_F_contig10273.408.1 ID=prot_S-firma_F_contig10273.408.1|Name=mRNA_S-firma_F_contig10273.408.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=89bp
DTDEDGLCNVGDPDDDNDTVLDDNDLCFPTRIGSDSGFFTEVDSSGCPKI
VWDGDFDGACLETDNCPNVYNPSQTNADGDDYGDACDLD
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mRNA from alignment at S-firma_F_contig10273:4609..4995-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10273.408.1 ID=mRNA_S-firma_F_contig10273.408.1|Name=mRNA_S-firma_F_contig10273.408.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=387bp|location=Sequence derived from alignment at S-firma_F_contig10273:4609..4995- (Sphaerotrichia firma ET2_F female)
GACACCGACGAAGACGGCCTGTGCAACGTGGGTGACCCGGATGACGACAA CGACACCGTCCTGGACGACAACGACCTGTGCTTCCCGACTCGGATCGGGT CTGACTCCGGCTTCTTCACGGAAGTGGACTCCTCCGGGTGCCCCAAGATT GTGTGGGACGGCGACTTTGACGGCGCCTGCGTCCTGCAGTCGTCGTGGAA CGAGCAGCCCATCTCCCGCCCCCGTGACTCCAACGGCCGATTCACCAACA CCAAGTTCTGCAAGAACGGCGCGTTGGCTGAGGAATTGAACCTGGACGAG CTGGAGACGGACAACTGCCCCAACGTGTACAACCCCTCCCAGACCAACGC CGACGGCGACGACTACGGTGACGCCTGTGACCTTGAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10273:4609..4995-

>mRNA_S-firma_F_contig10273.408.1 ID=mRNA_S-firma_F_contig10273.408.1|Name=mRNA_S-firma_F_contig10273.408.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=534bp|location=Sequence derived from alignment at S-firma_F_contig10273:4609..4995- (Sphaerotrichia firma ET2_F female)
GACACCGACGAAGACGGCCTGTGCAACGTGGGTGACCCGGATGACGACAA
CGACACCGTCCTGGACGACAACGACCTGTGCTTCCCGACTCGGATCGGGT
CTGACTCCGGCTTCTTCACGGAAGTGGACTCCTCCGGGTGCCCCAAGATT
GTGTGGGACGGCGACTTTGACGGCGCCTGCGACACCGACGAAGACGGCCT
GTGCAACGTGGGTGACCCGGATGACGACAACGACACCGTCCTGGACGACA
ACGACCTGTGCTTCCCGACTCGGATCGGGTCTGACTCCGGCTTCTTCACG
GAAGTGGACTCCTCCGGGTGCCCCAAGATTGTGTGGGACGGCGACTTTGA
CGGCGCCTGCCTGGAGACGGACAACTGCCCCAACGTGTACAACCCCTCCC
AGACCAACGCCGACGGCGACGACTACGGTGACGCCTGTGACCTTGACCTG
GAGACGGACAACTGCCCCAACGTGTACAACCCCTCCCAGACCAACGCCGA
CGGCGACGACTACGGTGACGCCTGTGACCTTGAC
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