mRNA_S-firma_F_contig10257.391.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10257.391.1
Unique NamemRNA_S-firma_F_contig10257.391.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10257.391.1 vs. uniprot
Match: A0A6H5JDL7_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL7_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.690e-47
Identity = 86/98 (87.76%), Postives = 93/98 (94.90%), Query Frame = 1 
Query:  343 AVAGTTALDKIVTSFLRNQHERCPDPVCVLPPLSLSEPHRCPGRTPAGALGAGAPPNVAKRALAWQAVPPLGGRGGARRQRAFVHSRFRRHRSITDPD 636
            AVAGTTALDKIVTSFLRNQHERC DP+CVLPPLSLSEPH+CPGRTPAGA+G+GAPPNVAKRALAWQAVPPLGGRGGAR Q+ FV+SRFRR RSI DP+
Sbjct: 1806 AVAGTTALDKIVTSFLRNQHERCSDPICVLPPLSLSEPHQCPGRTPAGAMGSGAPPNVAKRALAWQAVPPLGGRGGARLQKEFVYSRFRRIRSIQDPE 1903
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BLAST of mRNA_S-firma_F_contig10257.391.1 vs. uniprot
Match: D7FHI0_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI0_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 7.000e-31
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:  343 AVAGTTALDKIVTSFLRNQHERCPDPVCVLPPLSLSEPHRCPGRTPAGALGAGAPPNVAKRALAWQ 540
            AVAGTTALDKIVTSFLRNQHERC DP+CVLPPLSLSEPH+CPGRTPAGA+G+GAPPNVAKRALAWQ
Sbjct: 1756 AVAGTTALDKIVTSFLRNQHERCSDPICVLPPLSLSEPHQCPGRTPAGAMGSGAPPNVAKRALAWQ 1821
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BLAST of mRNA_S-firma_F_contig10257.391.1 vs. uniprot
Match: A0A388JZW1_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JZW1_CHABU)

HSP 1 Score: 74.3 bits (181), Expect = 8.270e-12
Identity = 44/95 (46.32%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:  346 VAGTTALDKIVTSFLRNQHERCPDPVCVLPPLSLSEPHRCPGRTPAGALGAGAPPNVAKRALAWQAVPPLGGRGGARRQRAFVHSRFRRHRSITD 630
            V G +ALD IVT +L++QH +CP P+  LPPLSL  PH CP   P   L A  P N+ +R    Q + P GG  G +  R FV SRFR  R+  D
Sbjct: 3881 VRGGSALDSIVTQYLKHQHRQCPSPITTLPPLSLLYPHFCP--EPRRLLDA--PYNITRRVRLRQQLAPYGGAYGKKHDRHFVFSRFRPWRTCRD 3971
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BLAST of mRNA_S-firma_F_contig10257.391.1 vs. uniprot
Match: A0A7M5UHX5_9CNID (LisH domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5UHX5_9CNID)

HSP 1 Score: 65.1 bits (157), Expect = 1.110e-8
Identity = 36/82 (43.90%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:  364 LDKIVTSFLRNQHERCPDPVCVLPPLSLSEPHRCPGRTPAGALGAGAPPNVAKRALAWQAVPPLGGRGGARRQRAFVHSRFR 609
            LD I+TS+LR QH RC +PV   PP SL  PH CP           A  N+ KR    Q  PP GG+ G +  R F++S+FR
Sbjct:  918 LDNIITSYLREQHARCANPVATCPPFSLFRPHNCPKPK----YRQRASNNITKRLFDRQGNPPQGGQMGCKYTRRFLYSKFR 995
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10257.391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JDL7_9PHAE1.690e-4787.76LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FHI0_ECTSI7.000e-3192.42LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A388JZW1_CHABU8.270e-1246.32Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A7M5UHX5_9CNID1.110e-843.90LisH domain-containing protein n=1 Tax=Clytia hemi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10257contigS-firma_F_contig10257:3338..4531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FHI0
Preferred nameVPRBP
PFAMsLisH
Max annot lvl2759|Eukaryota
KEGG koko:K10744,ko:K11789
KEGG Pathwayko03030,map03030
GOsGO:0000122,GO:0000151,GO:0001650,GO:0001775,GO:0002200,GO:0002376,GO:0002520,GO:0002521,GO:0002562,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016301,GO:0016310,GO:0016444,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019219,GO:0019222,GO:0019538,GO:0030097,GO:0030098,GO:0030154,GO:0030183,GO:0030331,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0034641,GO:0035173,GO:0035184,GO:0035212,GO:0035257,GO:0035258,GO:0035405,GO:0036211,GO:0040008,GO:0042113,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045321,GO:0045892,GO:0045934,GO:0046483,GO:0046649,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051427,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990164,GO:1990234,GO:1990244,GO:1990245,GO:2000112,GO:2000113,GO:2001141
Evalue1.15e-31
EggNOG OGsKOG1832@1|root,KOG1832@2759|Eukaryota
Descriptionhistone kinase activity (H2A-T120 specific)
COG categoryS
BRITEko00000,ko00001,ko03032,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size638
Cds size636
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.7391672-CDS-S-firma_F_contig10257:3337..38771622815555.7391672-CDS-S-firma_F_contig10257:3337..3877Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10257 3338..3877 +
1696949412.7551312-CDS-S-firma_F_contig10257:3337..38771696949412.7551312-CDS-S-firma_F_contig10257:3337..3877Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10257 3338..3877 +
1622815555.7498248-CDS-S-firma_F_contig10257:4435..45311622815555.7498248-CDS-S-firma_F_contig10257:4435..4531Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10257 4436..4531 +
1696949412.7692351-CDS-S-firma_F_contig10257:4435..45311696949412.7692351-CDS-S-firma_F_contig10257:4435..4531Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10257 4436..4531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10257.391.1prot_S-firma_F_contig10257.391.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10257 3338..4531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10257.391.1

>prot_S-firma_F_contig10257.391.1 ID=prot_S-firma_F_contig10257.391.1|Name=mRNA_S-firma_F_contig10257.391.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=212bp
VGTPRGFFTSVASSSSLTGTGGGGGGGGGSGMDDASFNVFESQNDRREAK
GGSGGGGGGGSSSIYSSAAKSLELAPRSVTHHQHVQGGGFGIGIGGPASR
DHRGAAGAAGGGGAAVAGTTALDKIVTSFLRNQHERCPDPVCVLPPLSLS
EPHRCPGRTPAGALGAGAPPNVAKRALAWQAVPPLGGRGGARRQRAFVHS
RFRRHRSITDPD
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mRNA from alignment at S-firma_F_contig10257:3338..4531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10257.391.1 ID=mRNA_S-firma_F_contig10257.391.1|Name=mRNA_S-firma_F_contig10257.391.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1194bp|location=Sequence derived from alignment at S-firma_F_contig10257:3338..4531+ (Sphaerotrichia firma ET2_F female)
GTGGGCACCCCGCGCGGTTTTTTCACGTCGGTGGCGTCGTCGTCGTCATT
GACTGGCACCGGCGGAGGCGGCGGCGGCGGCGGCGGTAGCGGAATGGACG
ACGCCTCTTTCAACGTCTTTGAGAGTCAAAACGACAGAAGAGAGGCCAAG
GGCGGCAGCGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCATCTACTCCAG
CGCCGCGAAGAGTCTCGAGCTCGCCCCTCGGAGCGTCACTCACCACCAAC
ACGTCCAAGGCGGCGGCTTCGGAATCGGAATCGGAGGCCCGGCCAGCAGG
GATCACCGGGGGGCCGCGGGAGCGGCCGGCGGCGGTGGTGCGGCGGTCGC
GGGGACGACAGCCCTCGACAAGATTGTCACGAGTTTCCTGAGAAACCAGC
ACGAGCGGTGTCCGGACCCCGTGTGCGTGTTGCCGCCGTTGTCGCTGTCG
GAGCCGCACCGCTGCCCCGGCAGGACTCCGGCGGGGGCGCTGGGGGCCGG
GGCTCCGCCGAACGTCGCTAAGCGCGCGCTTGCATGGCAGGTGCGTGGGT
GTGCATCTTTTCCTACTTAGCATCGACCACGCTAACCGGTTGATCAATGG
AAAATACTTCAGCCGTGGCGGGGAAATCCCCCCCCCCCGCTGAAAACGCT
GTTACCTGAGCGTTGGGACTCGTTGATAAGGGTTCCGCCGAACAAACACG
ACTGAGCTGCAGAGGTTCTGCATGCCGTTGTGTGCTTGATCGTTTATTAG
CGTCGCCCACGCGAACCGGTTGACCAAAGGAAAAGGCGTCAGCCTCAAGT
GGGCACAAGGCACAACCGGTTTCCTAGGTGTTGGGACCCCTTGATGAGAG
TTACTTTGAAAAACAACGACTGTGGGCGTGTGTACATAGGTGTGCGGTCT
CTTTGACCTCGAGCGTGTATTGCGTGAAAGCTGTACGGATTTGTTGCCTT
TGCACCAGTGTAGCTGGAGGCGGTGGGGGACAGCGTTGTTGTCGCCTGTT
CACGCTTGGAAAATGCTTCACCCCACAGCAGTTGCCATTGCCTGTTGTCT
CCCCTCGACCTCACTACCCCGTGCCCCCCCCCCCCGCCGACACAACAGGC
GGTGCCCCCTCTGGGAGGGCGCGGGGGCGCTCGACGGCAAAGAGCGTTCG
TGCATTCCCGCTTCCGCCGCCACCGGTCAATTACAGACCCTGAT
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Coding sequence (CDS) from alignment at S-firma_F_contig10257:3338..4531+

>mRNA_S-firma_F_contig10257.391.1 ID=mRNA_S-firma_F_contig10257.391.1|Name=mRNA_S-firma_F_contig10257.391.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1272bp|location=Sequence derived from alignment at S-firma_F_contig10257:3338..4531+ (Sphaerotrichia firma ET2_F female)
GTGGGCACCCCGCGCGGTTTTTTCACGTCGGTGGCGTCGTCGTCGTCATT
GACTGGCACCGGCGGAGGCGGCGGCGGCGGCGGCGGTAGCGGAATGGACG
ACGCCTCTTTCAACGTCTTTGAGAGTCAAAACGACAGAAGAGAGGCCAAG
GGCGGCAGCGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCATCTACTCCAG
CGCCGCGAAGAGTCTCGAGCTCGCCCCTCGGAGCGTCACTCACCACCAAC
ACGTCCAAGGCGGCGGCTTCGGAATCGGAATCGGAGGCCCGGCCAGCAGG
GATCACCGGGGGGCCGCGGGAGCGGCCGGCGGCGGTGGTGCGGCGGTCGC
GGGGACGACAGCCCTCGACAAGATTGTCACGAGTTTCCTGAGAAACCAGC
ACGAGCGGTGTCCGGACCCCGTGTGCGTGTTGCCGCCGTTGTCGCTGTCG
GAGCCGCACCGCTGCCCCGGCAGGACTCCGGCGGGGGCGCTGGGGGCCGG
GGCTCCGCCGAACGTCGCTAAGCGCGCGCTTGCATGGCAGGTGGGCACCC
CGCGCGGTTTTTTCACGTCGGTGGCGTCGTCGTCGTCATTGACTGGCACC
GGCGGAGGCGGCGGCGGCGGCGGCGGTAGCGGAATGGACGACGCCTCTTT
CAACGTCTTTGAGAGTCAAAACGACAGAAGAGAGGCCAAGGGCGGCAGCG
GCGGCGGCGGCGGCGGCGGCAGCAGCAGCATCTACTCCAGCGCCGCGAAG
AGTCTCGAGCTCGCCCCTCGGAGCGTCACTCACCACCAACACGTCCAAGG
CGGCGGCTTCGGAATCGGAATCGGAGGCCCGGCCAGCAGGGATCACCGGG
GGGCCGCGGGAGCGGCCGGCGGCGGTGGTGCGGCGGTCGCGGGGACGACA
GCCCTCGACAAGATTGTCACGAGTTTCCTGAGAAACCAGCACGAGCGGTG
TCCGGACCCCGTGTGCGTGTTGCCGCCGTTGTCGCTGTCGGAGCCGCACC
GCTGCCCCGGCAGGACTCCGGCGGGGGCGCTGGGGGCCGGGGCTCCGCCG
AACGTCGCTAAGCGCGCGCTTGCATGGCAGGCGGTGCCCCCTCTGGGAGG
GCGCGGGGGCGCTCGACGGCAAAGAGCGTTCGTGCATTCCCGCTTCCGCC
GCCACCGGTCAATTACAGACCCTGATGCGGTGCCCCCTCTGGGAGGGCGC
GGGGGCGCTCGACGGCAAAGAGCGTTCGTGCATTCCCGCTTCCGCCGCCA
CCGGTCAATTACAGACCCTGAT
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