prot_S-firma_F_contig10257.391.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10257.391.1
Unique Nameprot_S-firma_F_contig10257.391.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length212
Homology
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BLAST of mRNA_S-firma_F_contig10257.391.1 vs. uniprot
Match: A0A6H5JDL7_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL7_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.690e-47
Identity = 86/98 (87.76%), Postives = 93/98 (94.90%), Query Frame = 0 
Query:  115 AVAGTTALDKIVTSFLRNQHERCPDPVCVLPPLSLSEPHRCPGRTPAGALGAGAPPNVAKRALAWQAVPPLGGRGGARRQRAFVHSRFRRHRSITDPD 212
            AVAGTTALDKIVTSFLRNQHERC DP+CVLPPLSLSEPH+CPGRTPAGA+G+GAPPNVAKRALAWQAVPPLGGRGGAR Q+ FV+SRFRR RSI DP+
Sbjct: 1806 AVAGTTALDKIVTSFLRNQHERCSDPICVLPPLSLSEPHQCPGRTPAGAMGSGAPPNVAKRALAWQAVPPLGGRGGARLQKEFVYSRFRRIRSIQDPE 1903
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BLAST of mRNA_S-firma_F_contig10257.391.1 vs. uniprot
Match: D7FHI0_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI0_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 7.000e-31
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 0 
Query:  115 AVAGTTALDKIVTSFLRNQHERCPDPVCVLPPLSLSEPHRCPGRTPAGALGAGAPPNVAKRALAWQ 180
            AVAGTTALDKIVTSFLRNQHERC DP+CVLPPLSLSEPH+CPGRTPAGA+G+GAPPNVAKRALAWQ
Sbjct: 1756 AVAGTTALDKIVTSFLRNQHERCSDPICVLPPLSLSEPHQCPGRTPAGAMGSGAPPNVAKRALAWQ 1821
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BLAST of mRNA_S-firma_F_contig10257.391.1 vs. uniprot
Match: A0A388JZW1_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JZW1_CHABU)

HSP 1 Score: 74.3 bits (181), Expect = 8.270e-12
Identity = 44/95 (46.32%), Postives = 55/95 (57.89%), Query Frame = 0 
Query:  116 VAGTTALDKIVTSFLRNQHERCPDPVCVLPPLSLSEPHRCPGRTPAGALGAGAPPNVAKRALAWQAVPPLGGRGGARRQRAFVHSRFRRHRSITD 210
            V G +ALD IVT +L++QH +CP P+  LPPLSL  PH CP   P   L A  P N+ +R    Q + P GG  G +  R FV SRFR  R+  D
Sbjct: 3881 VRGGSALDSIVTQYLKHQHRQCPSPITTLPPLSLLYPHFCP--EPRRLLDA--PYNITRRVRLRQQLAPYGGAYGKKHDRHFVFSRFRPWRTCRD 3971
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BLAST of mRNA_S-firma_F_contig10257.391.1 vs. uniprot
Match: A0A7M5UHX5_9CNID (LisH domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5UHX5_9CNID)

HSP 1 Score: 65.1 bits (157), Expect = 1.110e-8
Identity = 36/82 (43.90%), Postives = 45/82 (54.88%), Query Frame = 0 
Query:  122 LDKIVTSFLRNQHERCPDPVCVLPPLSLSEPHRCPGRTPAGALGAGAPPNVAKRALAWQAVPPLGGRGGARRQRAFVHSRFR 203
            LD I+TS+LR QH RC +PV   PP SL  PH CP           A  N+ KR    Q  PP GG+ G +  R F++S+FR
Sbjct:  918 LDNIITSYLREQHARCANPVATCPPFSLFRPHNCPKPK----YRQRASNNITKRLFDRQGNPPQGGQMGCKYTRRFLYSKFR 995
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10257.391.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JDL7_9PHAE1.690e-4787.76LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FHI0_ECTSI7.000e-3192.42LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A388JZW1_CHABU8.270e-1246.32Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A7M5UHX5_9CNID1.110e-843.90LisH domain-containing protein n=1 Tax=Clytia hemi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033270VPRBP/DCAF1 familyPANTHERPTHR13129VPRBP PROTEIN-RELATEDcoord: 119..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10257contigS-firma_F_contig10257:3338..4531 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10257.391.1mRNA_S-firma_F_contig10257.391.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10257 3338..4531 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10257.391.1 ID=prot_S-firma_F_contig10257.391.1|Name=mRNA_S-firma_F_contig10257.391.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=212bp
VGTPRGFFTSVASSSSLTGTGGGGGGGGGSGMDDASFNVFESQNDRREAK
GGSGGGGGGGSSSIYSSAAKSLELAPRSVTHHQHVQGGGFGIGIGGPASR
DHRGAAGAAGGGGAAVAGTTALDKIVTSFLRNQHERCPDPVCVLPPLSLS
EPHRCPGRTPAGALGAGAPPNVAKRALAWQAVPPLGGRGGARRQRAFVHS
RFRRHRSITDPD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033270VPRBP/DCAF1