mRNA_S-firma_F_contig10066.136.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-firma_F_contig10066.136.1
Unique Name	mRNA_S-firma_F_contig10066.136.1
Type	mRNA
Organism	Sphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)

Homology

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BLAST of mRNA_S-firma_F_contig10066.136.1 vs. uniprot
Match: A0A2U8E0D4_9BACT (Uncharacterized protein n=1 Tax=Ereboglobus luteus TaxID=1796921 RepID=A0A2U8E0D4_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.200e-7
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 2

Query:   47 VATSRVEKGAASTTFLIDRVASVPSDNTPKKVTITIQELAATFRFSTSPAVAASAYLQANVVNTSDYTLL 256
            +AT+ V+    S TF I    S+PSDNTP+KV+IT+ +L A  ++  +PA+  +A+L A V NT++Y  L
Sbjct:  368 IATASVDASTTSATFKILAATSIPSDNTPQKVSITVNKLDAKLQYQATPAMQETAFLSAYVTNTTEYPFL 437

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BLAST of mRNA_S-firma_F_contig10066.136.1 vs. uniprot
Match: A0A0B7AAG8_9EUPU (Uncharacterized protein n=3 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7AAG8_9EUPU)

HSP 1 Score: 56.6 bits (135), Expect = 2.250e-7
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 2

Query:   29 PAPTAGVATSRVEKGAASTTFLIDRVASVPSDNTPKKVTITIQELAATFRFSTSPAVAASAYLQANVVNTSDYTLL 256
            P P   V   +V +   STT+ I R+++VPSD T  KVT+ I +L  T  + T P V   A+LQA V+NTS YTLL
Sbjct:  350 PVPIMPVPEVQVTESTTSTTYEIARLSTVPSDYTEHKVTVAIIDLKPTLTYVTVPKVVPHAFLQAKVINTSQYTLL 425

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BLAST of mRNA_S-firma_F_contig10066.136.1 vs. uniprot
Match: UPI00065B9BF0 (protein F37C4.5 isoform X1 n=2 Tax=Aplysia californica TaxID=6500 RepID=UPI00065B9BF0)

HSP 1 Score: 55.8 bits (133), Expect = 4.180e-7
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 2

Query:   59 RVEKGAASTTFLIDRVASVPSDNTPKKVTITIQELAATFRFSTSPAVAASAYLQANVVNTSDYTLLP 259
            ++++   S ++ I R +S+PSDNT  KVT+ I EL  T  + + P V   A+LQA VVNTS +TLLP
Sbjct:  338 KIQETTVSASYEIVRQSSIPSDNTSHKVTVGIMELKPTMTYVSIPKVVPHAFLQAKVVNTSKFTLLP 404

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BLAST of mRNA_S-firma_F_contig10066.136.1 vs. uniprot
Match: A0A139SQL2_9BACT (Uncharacterized protein n=2 Tax=Cephaloticoccus primus TaxID=1548207 RepID=A0A139SQL2_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.070e-6
Identity = 29/74 (39.19%), Postives = 49/74 (66.22%), Query Frame = 2

Query:   38 TAGVATSRVEKGAASTTFLIDRVASVPSDNTPKKVTITIQELAATFRFSTSPAVAASAYLQANVVNTSDYTLLP 259
            +A  A ++V++ A+  TF ++  A++PSDN+ KK+++T  +L A   +  +P    +A+L A+V NTSDY LLP
Sbjct:  346 SADYAEAQVDRSASVATFQVEAPATIPSDNSAKKISVTTLDLEAELAYRATPKRLPTAFLDASVRNTSDYPLLP 419

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BLAST of mRNA_S-firma_F_contig10066.136.1 vs. uniprot
Match: A0A3E1E6D4_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A3E1E6D4_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 1.460e-6
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 2

Query:   41 AGVATSRVEKGAASTTFLIDRVASVPSDNTPKKVTITIQELAATFRFSTSPAVAASAYLQANVVNTSDYTLL 256
            A +A + +E GA S +F I   ASVPSDN+P+KV I  + LAA   + T P    +A+L A VVNTS++ LL
Sbjct:  337 AEMAVAMIETGATSASFKIATSASVPSDNSPQKVPIMSERLAAKPEYLTVPKRLTTAFLTAKVVNTSEFPLL 408

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BLAST of mRNA_S-firma_F_contig10066.136.1 vs. uniprot
Match: A0A2U8E4K2_9BACT (Uncharacterized protein n=1 Tax=Ereboglobus luteus TaxID=1796921 RepID=A0A2U8E4K2_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 7.000e-6
Identity = 29/73 (39.73%), Postives = 47/73 (64.38%), Query Frame = 2

Query:   38 TAGVATSRVEKGAASTTFLIDRVASVPSDNTPKKVTITIQELAATFRFSTSPAVAASAYLQANVVNTSDYTLL 256
            T+  A ++V+    S +F I    S+PSDNTP+KV+IT  +L A  ++ + PA+  +AYL A V N++++ LL
Sbjct:  378 TSDYAVAKVDNTTTSASFKIAAATSIPSDNTPQKVSITTAKLGAKLQYQSLPALQETAYLSAYVDNSTEFPLL 450

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_F_contig10066.136.1 vs. uniprot

BLAST of mRNA_S-firma_F_contig10066.136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 6

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A2U8E0D4_9BACT	1.200e-7	42.86	Uncharacterized protein n=1 Tax=Ereboglobus luteus...	[more]
A0A0B7AAG8_9EUPU	2.250e-7	46.05	Uncharacterized protein n=3 Tax=Arion vulgaris Tax...	[more]
UPI00065B9BF0	4.180e-7	46.27	protein F37C4.5 isoform X1 n=2 Tax=Aplysia califor...	[more]
A0A139SQL2_9BACT	1.070e-6	39.19	Uncharacterized protein n=2 Tax=Cephaloticoccus pr...	[more]
A0A3E1E6D4_9BACT	1.460e-6	47.22	Uncharacterized protein n=1 Tax=Verrucomicrobia ba...	[more]
A0A2U8E4K2_9BACT	7.000e-6	39.73	Uncharacterized protein n=1 Tax=Ereboglobus luteus...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_F_contig10066	contig	S-firma_F_contig10066:3825..4140 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90	2022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female	2021-02-24

Properties


Property Name	Value
Seed ortholog	6500.XP_005097215.1
PFAMs	DUF4139,DUF4140
Max annot lvl	33208\|Metazoa
GOs	GO:0003674,GO:0005488,GO:0005515
Evalue	1.28e-07
EggNOG OGs	28Q1A@1\|root,2QWQ0@2759\|Eukaryota,39YYB@33154\|Opisthokonta,3BJDT@33208\|Metazoa,3D721@33213\|Bilateria
Description	N-terminal domain of unknown function (DUF4140)
COG category	S
Hectar predicted targeting category	other localisation
Exons	2
Model size	264
Cds size	261
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_F_contig10066.136.1	prot_S-firma_F_contig10066.136.1	Sphaerotrichia firma ET2_F female	polypeptide	S-firma_F_contig10066 3826..4140 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815531.5504303-UTR-S-firma_F_contig10066:3824..3825	1622815531.5504303-UTR-S-firma_F_contig10066:3824..3825	Sphaerotrichia firma ET2_F female	UTR	S-firma_F_contig10066 3825..3825 +
1696949393.5958595-UTR-S-firma_F_contig10066:3824..3825	1696949393.5958595-UTR-S-firma_F_contig10066:3824..3825	Sphaerotrichia firma ET2_F female	UTR	S-firma_F_contig10066 3825..3825 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815531.5613523-CDS-S-firma_F_contig10066:3825..4031	1622815531.5613523-CDS-S-firma_F_contig10066:3825..4031	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10066 3826..4031 +
1696949393.6063454-CDS-S-firma_F_contig10066:3825..4031	1696949393.6063454-CDS-S-firma_F_contig10066:3825..4031	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10066 3826..4031 +
1622815531.57194-CDS-S-firma_F_contig10066:4085..4140	1622815531.57194-CDS-S-firma_F_contig10066:4085..4140	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10066 4086..4140 +
1696949393.6164265-CDS-S-firma_F_contig10066:4085..4140	1696949393.6164265-CDS-S-firma_F_contig10066:4085..4140	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10066 4086..4140 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-firma_F_contig10066:3825..4140+
coding sequence from alignment at S-firma_F_contig10066:3825..4140+

protein sequence of mRNA_S-firma_F_contig10066.136.1

>prot_S-firma_F_contig10066.136.1 ID=prot_S-firma_F_contig10066.136.1|Name=mRNA_S-firma_F_contig10066.136.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=87bp
MPPGAPRPPPAPTAGVATSRVEKGAASTTFLIDRVASVPSDNTPKKVTIT
IQELAATFRFSTSPAVAASAYLQANVVNTSDYTLLPS

mRNA from alignment at S-firma_F_contig10066:3825..4140+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-firma_F_contig10066.136.1 ID=mRNA_S-firma_F_contig10066.136.1|Name=mRNA_S-firma_F_contig10066.136.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=316bp|location=Sequence derived from alignment at S-firma_F_contig10066:3825..4140+ (Sphaerotrichia firma ET2_F female)
CATGCCGCCGGGTGCCCCCCGCCCTCCGCCGGCCCCCACCGCGGGCGTGG
CCACCAGCCGCGTTGAGAAGGGTGCCGCCAGCACCACTTTCCTCATTGAC
CGTGTGGCCAGCGTGCCGTCGGACAACACCCCCAAGAAGGTCACGATTAC
CATCCAGGAGCTTGCCGCGACGTTCCGGTTTTCGACGTCGCCGGCTGTCG
CCGCCAGGTGCGTGTTTGCTTTGTGGCCCTCGCCGCACGCCCACCCTCTT
GTGTGTTGCAGCGCGTACCTGCAGGCCAACGTCGTCAACACGTCGGATTA
CACCCTGCTGCCGTCG

Coding sequence (CDS) from alignment at S-firma_F_contig10066:3825..4140+

>mRNA_S-firma_F_contig10066.136.1 ID=mRNA_S-firma_F_contig10066.136.1|Name=mRNA_S-firma_F_contig10066.136.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=522bp|location=Sequence derived from alignment at S-firma_F_contig10066:3825..4140+ (Sphaerotrichia firma ET2_F female)
ATGCCGCCGGGTGCCCCCCGCCCTCCGCCGGCCCCCACCGCGGGCGTGGC
CACCAGCCGCGTTGAGAAGGGTGCCGCCAGCACCACTTTCCTCATTGACC
GTGTGGCCAGCGTGCCGTCGGACAACACCCCCAAGAAGGTCACGATTACC
ATCCAGGAGCTTGCCGCGACGTTCCGGTTTTCGACGTCGCCGGCTGTCGC
CGCCAGATGCCGCCGGGTGCCCCCCGCCCTCCGCCGGCCCCCACCGCGGG
CGTGGCCACCAGCCGCGTTGAGAAGGGTGCCGCCAGCACCACTTTCCTCA
TTGACCGTGTGGCCAGCGTGCCGTCGGACAACACCCCCAAGAAGGTCACG
ATTACCATCCAGGAGCTTGCCGCGACGTTCCGGTTTTCGACGTCGCCGGC
TGTCGCCGCCAGCGCGTACCTGCAGGCCAACGTCGTCAACACGTCGGATT
ACACCCTGCTGCCGTCGCGCGTACCTGCAGGCCAACGTCGTCAACACGTC
GGATTACACCCTGCTGCCGTCG